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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133399142-133750320

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Slc9a1 4 133369711 to 133423702 53991 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 1
Tssr39479 4 133403942 to 133403945 3 + TSS region transcription start site region 39479
Tssr39480 4 133412016 to 133412031 15 + TSS region transcription start site region 39480
Tssr39481 4 133412165 to 133412177 12 + TSS region transcription start site region 39481
Tssr39482 4 133415422 to 133415440 18 + TSS region transcription start site region 39482
Tssr43758 4 133417146 to 133417153 7 - TSS region transcription start site region 43758
Tssr43759 4 133417164 to 133417173 9 - TSS region transcription start site region 43759
Tssr39483 4 133417203 to 133417229 26 + TSS region transcription start site region 39483
D4Dcr27 4 133427364 to 133427461 97 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 27
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
Bcmd2 4 133427367 to 150704994 17277627 QTL B cell maturation defect 2
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Femwf13 4 133427367 to 133427471 104 QTL femur work to failure 13
D4Mit204 4 133427367 to 133427471 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 204
1700091J24Rik 4 133432739 to 133434897 2158 - lncRNA gene RIKEN cDNA 1700091J24 gene
Tssr43760 4 133432924 to 133432932 8 - TSS region transcription start site region 43760
Tssr43761 4 133432980 to 133433016 36 - TSS region transcription start site region 43761
Gm42322 4 133437060 to 133440366 3306 - lncRNA gene predicted gene, 42322
Tssr39484 4 133443316 to 133443335 19 + TSS region transcription start site region 39484
Cpgi15000 4 133468070 to 133468441 371 CpG island CpG island 15000
Gm13257 4 133479356 to 133482526 3170 - antisense lncRNA gene predicted gene 13257
Cpgi15001 4 133479703 to 133480981 1278 CpG island CpG island 15001
Tssr39485 4 133480126 to 133480149 23 + TSS region transcription start site region 39485
Tent5b 4 133480132 to 133487938 7806 + protein coding gene terminal nucleotidyltransferase 5B
Cpgi15002 4 133484287 to 133484534 247 CpG island CpG island 15002
Cpgi15003 4 133486082 to 133486938 856 CpG island CpG island 15003
Trnp1 4 133491100 to 133498550 7450 - protein coding gene TMF1-regulated nuclear protein 1
Cpgi15004 4 133497405 to 133498909 1504 CpG island CpG island 15004
Tssr43762 4 133497772 to 133497788 16 - TSS region transcription start site region 43762
Tssr43763 4 133498478 to 133498508 30 - TSS region transcription start site region 43763
Tssr43764 4 133498514 to 133498531 17 - TSS region transcription start site region 43764
Tssr43765 4 133498538 to 133498556 18 - TSS region transcription start site region 43765
Gm42323 4 133512874 to 133522320 9446 - protein coding gene predicted gene, 42323
Tssr39486 4 133518721 to 133518732 11 + TSS region transcription start site region 39486
Tssr39487 4 133518737 to 133518750 13 + TSS region transcription start site region 39487
Cpgi15005 4 133518767 to 133519795 1028 CpG island CpG island 15005
Kdf1 4 133518963 to 133530790 11827 + protein coding gene keratinocyte differentiation factor 1
Tssr39488 4 133518981 to 133519010 29 + TSS region transcription start site region 39488
Cpgi15006 4 133528549 to 133528969 420 CpG island CpG island 15006
Nudc 4 133532542 to 133545996 13454 - protein coding gene nudC nuclear distribution protein
Tssr43766 4 133536769 to 133536784 15 - TSS region transcription start site region 43766
Cpgi15007 4 133545401 to 133546268 867 CpG island CpG island 15007
Tssr43767 4 133545618 to 133545628 10 - TSS region transcription start site region 43767
Tssr43768 4 133545906 to 133546011 105 - TSS region transcription start site region 43768
Tssr39489 4 133553370 to 133553393 23 + TSS region transcription start site region 39489
Nr0b2 4 133553376 to 133556536 3160 + protein coding gene nuclear receptor subfamily 0, group B, member 2
Gm23158 4 133558824 to 133558949 125 - miRNA gene predicted gene, 23158
Cpgi15008 4 133574142 to 133575320 1178 CpG island CpG island 15008
Tssr39490 4 133574728 to 133574771 43 + TSS region transcription start site region 39490
Gpatch3 4 133574745 to 133584242 9497 + protein coding gene G patch domain containing 3
Cpgi15009 4 133584018 to 133584953 935 CpG island CpG island 15009
Tssr39491 4 133584337 to 133584348 11 + TSS region transcription start site region 39491
Tssr39492 4 133584355 to 133584415 60 + TSS region transcription start site region 39492
Gpn2 4 133584373 to 133591735 7362 + protein coding gene GPN-loop GTPase 2
Tssr39493 4 133584419 to 133584426 7 + TSS region transcription start site region 39493
Gm42324 4 133594939 to 133596007 1068 - lncRNA gene predicted gene, 42324
Tssr43769 4 133598765 to 133598788 23 - TSS region transcription start site region 43769
Tssr43770 4 133598797 to 133598830 33 - TSS region transcription start site region 43770
Cpgi15010 4 133599286 to 133600394 1108 CpG island CpG island 15010
Sfn 4 133600556 to 133602168 1612 - protein coding gene stratifin
Cpgi15011 4 133601454 to 133601924 470 CpG island CpG island 15011
Tssr43771 4 133601477 to 133601515 38 - TSS region transcription start site region 43771
Tssr43772 4 133601822 to 133601838 16 - TSS region transcription start site region 43772
Tssr43773 4 133601839 to 133601868 29 - TSS region transcription start site region 43773
Tssr43774 4 133601871 to 133601889 18 - TSS region transcription start site region 43774
Tssr43775 4 133601892 to 133601904 12 - TSS region transcription start site region 43775
Zdhhc18 4 133604656 to 133633480 28824 - protein coding gene zinc finger, DHHC domain containing 18
Tssr43776 4 133620688 to 133620710 22 - TSS region transcription start site region 43776
Tssr43777 4 133620735 to 133620762 27 - TSS region transcription start site region 43777
Tssr43778 4 133622522 to 133622533 11 - TSS region transcription start site region 43778
Tssr43779 4 133622558 to 133622577 19 - TSS region transcription start site region 43779
Tssr39494 4 133622709 to 133622746 37 + TSS region transcription start site region 39494
Tssr43780 4 133623069 to 133623076 7 - TSS region transcription start site region 43780
Tssr43781 4 133625600 to 133625629 29 - TSS region transcription start site region 43781
Tssr39495 4 133625987 to 133626009 22 + TSS region transcription start site region 39495
Tssr39496 4 133629540 to 133629549 9 + TSS region transcription start site region 39496
Tssr43782 4 133631130 to 133631158 28 - TSS region transcription start site region 43782
Tssr43783 4 133632120 to 133632137 17 - TSS region transcription start site region 43783
Tssr43784 4 133632235 to 133632268 33 - TSS region transcription start site region 43784
Tssr39497 4 133632238 to 133632264 26 + TSS region transcription start site region 39497
Tssr39498 4 133632339 to 133632363 24 + TSS region transcription start site region 39498
Cpgi15012 4 133632624 to 133633999 1375 CpG island CpG island 15012
Tssr39499 4 133633085 to 133633106 21 + TSS region transcription start site region 39499
Tssr43785 4 133633419 to 133633525 106 - TSS region transcription start site region 43785
Tssr43786 4 133633618 to 133633631 13 - TSS region transcription start site region 43786
Gm13213 4 133638210 to 133638683 473 - pseudogene predicted gene 13213
Cpgi15013 4 133645632 to 133645962 330 CpG island CpG island 15013
Gm22662 4 133654002 to 133654257 255 + unclassified non-coding RNA gene predicted gene, 22662
Tssr43787 4 133658838 to 133658844 6 - TSS region transcription start site region 43787
Tssr39500 4 133658956 to 133658978 22 + TSS region transcription start site region 39500
Pigv 4 133660387 to 133672647 12260 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class V
Tssr43788 4 133660745 to 133660783 38 - TSS region transcription start site region 43788
Tssr43789 4 133660864 to 133660910 46 - TSS region transcription start site region 43789
Tssr43790 4 133666671 to 133666678 7 - TSS region transcription start site region 43790
Cpgi15014 4 133672185 to 133673137 952 CpG island CpG island 15014
Tssr43791 4 133672601 to 133672652 51 - TSS region transcription start site region 43791
Tssr39501 4 133672673 to 133672733 60 + TSS region transcription start site region 39501
1700041L08Rik 4 133672718 to 133673236 518 unclassified gene RIKEN cDNA 1700041L08 gene
Tssr43792 4 133672982 to 133673002 20 - TSS region transcription start site region 43792
Tssr43793 4 133673137 to 133673160 23 - TSS region transcription start site region 43793
Tssr43794 4 133673216 to 133673242 26 - TSS region transcription start site region 43794
Tssr43795 4 133674067 to 133674115 48 - TSS region transcription start site region 43795
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr1328 4 133686302 to 133686307 5 + TSS region transcription start site region 1328
Tssr43796 4 133686673 to 133686694 21 - TSS region transcription start site region 43796
Mir7227 4 133717050 to 133717108 58 - miRNA gene microRNA 7227
Tssr43797 4 133720783 to 133720828 45 - TSS region transcription start site region 43797
Tssr43798 4 133720864 to 133720881 17 - TSS region transcription start site region 43798
Tssr43799 4 133720886 to 133720976 90 - TSS region transcription start site region 43799
Tssr43800 4 133722896 to 133722909 13 - TSS region transcription start site region 43800
Tssr43801 4 133722990 to 133723030 40 - TSS region transcription start site region 43801
Tssr43802 4 133723159 to 133723163 4 - TSS region transcription start site region 43802