Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133248754-135238768

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547 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Map3k6 4 133240818 to 133252929 12111 + protein coding gene mitogen-activated protein kinase kinase kinase 6
Cpgi14995 4 133250628 to 133251650 1022 CpG island CpG island 14995
Tssr39472 4 133251353 to 133251388 35 + TSS region transcription start site region 39472
Tssr39473 4 133251410 to 133251421 11 + TSS region transcription start site region 39473
Tssr39474 4 133251523 to 133251548 25 + TSS region transcription start site region 39474
Sytl1 4 133253090 to 133263087 9997 - protein coding gene synaptotagmin-like 1
Cpgi14996 4 133256790 to 133257121 331 CpG island CpG island 14996
Tssr43745 4 133263042 to 133263135 93 - TSS region transcription start site region 43745
Tmem222 4 133266045 to 133277790 11745 - protein coding gene transmembrane protein 222
Cpgi14997 4 133277031 to 133278110 1079 CpG island CpG island 14997
Tssr43746 4 133277593 to 133277674 81 - TSS region transcription start site region 43746
Tssr43747 4 133277683 to 133277712 29 - TSS region transcription start site region 43747
Tssr43748 4 133277730 to 133277804 74 - TSS region transcription start site region 43748
Gm13259 4 133280857 to 133281312 455 - pseudogene predicted gene 13259
Gm3627 4 133292207 to 133294212 2005 protein coding gene predicted gene 3627
Wdtc1 4 133292466 to 133353467 61001 - protein coding gene WD and tetratricopeptide repeats 1
Cpgi14998 4 133338702 to 133339879 1177 CpG island CpG island 14998
Tssr43749 4 133339164 to 133339183 19 - TSS region transcription start site region 43749
Tssr43750 4 133339184 to 133339234 50 - TSS region transcription start site region 43750
Tssr43751 4 133339238 to 133339263 25 - TSS region transcription start site region 43751
Tssr43752 4 133339283 to 133339334 51 - TSS region transcription start site region 43752
Tssr43753 4 133352833 to 133352851 18 - TSS region transcription start site region 43753
Tssr43754 4 133352852 to 133352876 24 - TSS region transcription start site region 43754
Tssr43755 4 133352887 to 133352897 10 - TSS region transcription start site region 43755
Tssr43756 4 133353447 to 133353474 27 - TSS region transcription start site region 43756
Tssr43757 4 133353476 to 133353505 29 - TSS region transcription start site region 43757
Cpgi14999 4 133369629 to 133370122 493 CpG island CpG island 14999
Tssr39475 4 133369702 to 133369709 7 + TSS region transcription start site region 39475
Slc9a1 4 133369711 to 133423702 53991 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 1
Tssr39476 4 133369720 to 133369743 23 + TSS region transcription start site region 39476
Tssr39477 4 133369765 to 133369780 15 + TSS region transcription start site region 39477
Mir5122 4 133369776 to 133369864 88 + miRNA gene microRNA 5122
Tssr39478 4 133370189 to 133370229 40 + TSS region transcription start site region 39478
Tssr1327 4 133378757 to 133378761 4 + TSS region transcription start site region 1327
Tssr39479 4 133403942 to 133403945 3 + TSS region transcription start site region 39479
Tssr39480 4 133412016 to 133412031 15 + TSS region transcription start site region 39480
Tssr39481 4 133412165 to 133412177 12 + TSS region transcription start site region 39481
Tssr39482 4 133415422 to 133415440 18 + TSS region transcription start site region 39482
Tssr43758 4 133417146 to 133417153 7 - TSS region transcription start site region 43758
Tssr43759 4 133417164 to 133417173 9 - TSS region transcription start site region 43759
Tssr39483 4 133417203 to 133417229 26 + TSS region transcription start site region 39483
D4Dcr27 4 133427364 to 133427461 97 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 27
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Bcmd2 4 133427367 to 150704994 17277627 QTL B cell maturation defect 2
Femwf13 4 133427367 to 133427471 104 QTL femur work to failure 13
D4Mit204 4 133427367 to 133427471 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 204
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
1700091J24Rik 4 133432739 to 133434897 2158 - lncRNA gene RIKEN cDNA 1700091J24 gene
Tssr43760 4 133432924 to 133432932 8 - TSS region transcription start site region 43760
Tssr43761 4 133432980 to 133433016 36 - TSS region transcription start site region 43761
Gm42322 4 133437060 to 133440366 3306 - lncRNA gene predicted gene, 42322
Tssr39484 4 133443316 to 133443335 19 + TSS region transcription start site region 39484
Cpgi15000 4 133468070 to 133468441 371 CpG island CpG island 15000
Gm13257 4 133479356 to 133482526 3170 - antisense lncRNA gene predicted gene 13257
Cpgi15001 4 133479703 to 133480981 1278 CpG island CpG island 15001
Tssr39485 4 133480126 to 133480149 23 + TSS region transcription start site region 39485
Tent5b 4 133480132 to 133487938 7806 + protein coding gene terminal nucleotidyltransferase 5B
Cpgi15002 4 133484287 to 133484534 247 CpG island CpG island 15002
Cpgi15003 4 133486082 to 133486938 856 CpG island CpG island 15003
Trnp1 4 133491100 to 133498550 7450 - protein coding gene TMF1-regulated nuclear protein 1
Cpgi15004 4 133497405 to 133498909 1504 CpG island CpG island 15004
Tssr43762 4 133497772 to 133497788 16 - TSS region transcription start site region 43762
Tssr43763 4 133498478 to 133498508 30 - TSS region transcription start site region 43763
Tssr43764 4 133498514 to 133498531 17 - TSS region transcription start site region 43764
Tssr43765 4 133498538 to 133498556 18 - TSS region transcription start site region 43765
Gm42323 4 133512874 to 133522320 9446 - protein coding gene predicted gene, 42323
Tssr39486 4 133518721 to 133518732 11 + TSS region transcription start site region 39486
Tssr39487 4 133518737 to 133518750 13 + TSS region transcription start site region 39487
Cpgi15005 4 133518767 to 133519795 1028 CpG island CpG island 15005
Kdf1 4 133518963 to 133530790 11827 + protein coding gene keratinocyte differentiation factor 1
Tssr39488 4 133518981 to 133519010 29 + TSS region transcription start site region 39488
Cpgi15006 4 133528549 to 133528969 420 CpG island CpG island 15006
Nudc 4 133532542 to 133545996 13454 - protein coding gene nudC nuclear distribution protein
Tssr43766 4 133536769 to 133536784 15 - TSS region transcription start site region 43766
Cpgi15007 4 133545401 to 133546268 867 CpG island CpG island 15007
Tssr43767 4 133545618 to 133545628 10 - TSS region transcription start site region 43767
Tssr43768 4 133545906 to 133546011 105 - TSS region transcription start site region 43768
Tssr39489 4 133553370 to 133553393 23 + TSS region transcription start site region 39489
Nr0b2 4 133553376 to 133556536 3160 + protein coding gene nuclear receptor subfamily 0, group B, member 2
Gm23158 4 133558824 to 133558949 125 - miRNA gene predicted gene, 23158
Cpgi15008 4 133574142 to 133575320 1178 CpG island CpG island 15008
Tssr39490 4 133574728 to 133574771 43 + TSS region transcription start site region 39490
Gpatch3 4 133574745 to 133584242 9497 + protein coding gene G patch domain containing 3
Cpgi15009 4 133584018 to 133584953 935 CpG island CpG island 15009
Tssr39491 4 133584337 to 133584348 11 + TSS region transcription start site region 39491
Tssr39492 4 133584355 to 133584415 60 + TSS region transcription start site region 39492
Gpn2 4 133584373 to 133591735 7362 + protein coding gene GPN-loop GTPase 2
Tssr39493 4 133584419 to 133584426 7 + TSS region transcription start site region 39493
Gm42324 4 133594939 to 133596007 1068 - lncRNA gene predicted gene, 42324
Tssr43769 4 133598765 to 133598788 23 - TSS region transcription start site region 43769
Tssr43770 4 133598797 to 133598830 33 - TSS region transcription start site region 43770
Cpgi15010 4 133599286 to 133600394 1108 CpG island CpG island 15010
Sfn 4 133600556 to 133602168 1612 - protein coding gene stratifin
Cpgi15011 4 133601454 to 133601924 470 CpG island CpG island 15011
Tssr43771 4 133601477 to 133601515 38 - TSS region transcription start site region 43771
Tssr43772 4 133601822 to 133601838 16 - TSS region transcription start site region 43772
Tssr43773 4 133601839 to 133601868 29 - TSS region transcription start site region 43773
Tssr43774 4 133601871 to 133601889 18 - TSS region transcription start site region 43774
Tssr43775 4 133601892 to 133601904 12 - TSS region transcription start site region 43775
Zdhhc18 4 133604656 to 133633480 28824 - protein coding gene zinc finger, DHHC domain containing 18
Tssr43776 4 133620688 to 133620710 22 - TSS region transcription start site region 43776
Tssr43777 4 133620735 to 133620762 27 - TSS region transcription start site region 43777
Tssr43778 4 133622522 to 133622533 11 - TSS region transcription start site region 43778
Tssr43779 4 133622558 to 133622577 19 - TSS region transcription start site region 43779
Tssr39494 4 133622709 to 133622746 37 + TSS region transcription start site region 39494
Tssr43780 4 133623069 to 133623076 7 - TSS region transcription start site region 43780
Tssr43781 4 133625600 to 133625629 29 - TSS region transcription start site region 43781
Tssr39495 4 133625987 to 133626009 22 + TSS region transcription start site region 39495
Tssr39496 4 133629540 to 133629549 9 + TSS region transcription start site region 39496
Tssr43782 4 133631130 to 133631158 28 - TSS region transcription start site region 43782
Tssr43783 4 133632120 to 133632137 17 - TSS region transcription start site region 43783
Tssr43784 4 133632235 to 133632268 33 - TSS region transcription start site region 43784
Tssr39497 4 133632238 to 133632264 26 + TSS region transcription start site region 39497
Tssr39498 4 133632339 to 133632363 24 + TSS region transcription start site region 39498
Cpgi15012 4 133632624 to 133633999 1375 CpG island CpG island 15012
Tssr39499 4 133633085 to 133633106 21 + TSS region transcription start site region 39499
Tssr43785 4 133633419 to 133633525 106 - TSS region transcription start site region 43785
Tssr43786 4 133633618 to 133633631 13 - TSS region transcription start site region 43786
Gm13213 4 133638210 to 133638683 473 - pseudogene predicted gene 13213
Cpgi15013 4 133645632 to 133645962 330 CpG island CpG island 15013
Gm22662 4 133654002 to 133654257 255 + unclassified non-coding RNA gene predicted gene, 22662
Tssr43787 4 133658838 to 133658844 6 - TSS region transcription start site region 43787
Tssr39500 4 133658956 to 133658978 22 + TSS region transcription start site region 39500
Pigv 4 133660387 to 133672647 12260 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class V
Tssr43788 4 133660745 to 133660783 38 - TSS region transcription start site region 43788
Tssr43789 4 133660864 to 133660910 46 - TSS region transcription start site region 43789
Tssr43790 4 133666671 to 133666678 7 - TSS region transcription start site region 43790
Cpgi15014 4 133672185 to 133673137 952 CpG island CpG island 15014
Tssr43791 4 133672601 to 133672652 51 - TSS region transcription start site region 43791
Tssr39501 4 133672673 to 133672733 60 + TSS region transcription start site region 39501
1700041L08Rik 4 133672718 to 133673236 518 unclassified gene RIKEN cDNA 1700041L08 gene
Tssr43792 4 133672982 to 133673002 20 - TSS region transcription start site region 43792
Tssr43793 4 133673137 to 133673160 23 - TSS region transcription start site region 43793
Tssr43794 4 133673216 to 133673242 26 - TSS region transcription start site region 43794
Tssr43795 4 133674067 to 133674115 48 - TSS region transcription start site region 43795
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr1328 4 133686302 to 133686307 5 + TSS region transcription start site region 1328
Tssr43796 4 133686673 to 133686694 21 - TSS region transcription start site region 43796
Mir7227 4 133717050 to 133717108 58 - miRNA gene microRNA 7227
Tssr43797 4 133720783 to 133720828 45 - TSS region transcription start site region 43797
Tssr43798 4 133720864 to 133720881 17 - TSS region transcription start site region 43798
Tssr43799 4 133720886 to 133720976 90 - TSS region transcription start site region 43799
Tssr43800 4 133722896 to 133722909 13 - TSS region transcription start site region 43800
Tssr43801 4 133722990 to 133723030 40 - TSS region transcription start site region 43801
Tssr43802 4 133723159 to 133723163 4 - TSS region transcription start site region 43802
Tssr43803 4 133751618 to 133751629 11 - TSS region transcription start site region 43803
Tssr39502 4 133751837 to 133751848 11 + TSS region transcription start site region 39502
Cpgi15015 4 133752049 to 133755024 2975 CpG island CpG island 15015
Tssr43804 4 133752704 to 133752756 52 - TSS region transcription start site region 43804
Tssr43805 4 133753030 to 133753044 14 - TSS region transcription start site region 43805
Tssr43806 4 133753616 to 133753666 50 - TSS region transcription start site region 43806
Tssr43807 4 133753860 to 133753869 9 - TSS region transcription start site region 43807
Tssr43808 4 133753915 to 133753926 11 - TSS region transcription start site region 43808
Tssr43809 4 133753961 to 133754019 58 - TSS region transcription start site region 43809
Tssr43810 4 133754222 to 133754237 15 - TSS region transcription start site region 43810
Tssr43811 4 133754260 to 133754297 37 - TSS region transcription start site region 43811
Tssr43812 4 133754299 to 133754316 17 - TSS region transcription start site region 43812
Tssr43813 4 133754322 to 133754378 56 - TSS region transcription start site region 43813
Tssr43814 4 133754397 to 133754408 11 - TSS region transcription start site region 43814
Cpgi15016 4 133756499 to 133757883 1384 CpG island CpG island 15016
Tssr43815 4 133756520 to 133756539 19 - TSS region transcription start site region 43815
Tssr43816 4 133756780 to 133756794 14 - TSS region transcription start site region 43816
Tssr43817 4 133757400 to 133757435 35 - TSS region transcription start site region 43817
Gm30019 4 133768128 to 133775447 7319 - lncRNA gene predicted gene, 30019
Gm29942 4 133774969 to 133781279 6310 + lncRNA gene predicted gene, 29942
D4Mit71 4 133785915 to 133786031 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 71
D4Dcr28 4 133785938 to 133786036 98 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 28
Gm34296 4 133792037 to 133821546 29509 - lncRNA gene predicted gene, 34296
Gm25270 4 133797582 to 133797719 137 - snRNA gene predicted gene, 25270
Cpgi15017 4 133813135 to 133814792 1657 CpG island CpG island 15017
Tssr43818 4 133813294 to 133813305 11 - TSS region transcription start site region 43818
Tssr39503 4 133813402 to 133813405 3 + TSS region transcription start site region 39503
Tssr39504 4 133813534 to 133813561 27 + TSS region transcription start site region 39504
Tssr43819 4 133814106 to 133814134 28 - TSS region transcription start site region 43819
Tssr43820 4 133815805 to 133815816 11 - TSS region transcription start site region 43820
Tssr39505 4 133816248 to 133816254 6 + TSS region transcription start site region 39505
Tssr39506 4 133816281 to 133816293 12 + TSS region transcription start site region 39506
Gm12974 4 133816420 to 133817614 1194 + lincRNA gene predicted gene 12974
Tssr39507 4 133816474 to 133816490 16 + TSS region transcription start site region 39507
Rps6ka1 4 133847290 to 133887797 40507 - protein coding gene ribosomal protein S6 kinase polypeptide 1
Tssr43821 4 133865316 to 133865337 21 - TSS region transcription start site region 43821
Gm12977 4 133871830 to 133876533 4703 + antisense lncRNA gene predicted gene 12977
Tssr43822 4 133872304 to 133872346 42 - TSS region transcription start site region 43822
Tssr43823 4 133872997 to 133873044 47 - TSS region transcription start site region 43823
Tssr43824 4 133873048 to 133873061 13 - TSS region transcription start site region 43824
Tssr43825 4 133874658 to 133874669 11 - TSS region transcription start site region 43825
Tssr43826 4 133874682 to 133874722 40 - TSS region transcription start site region 43826
Tssr43827 4 133875228 to 133875239 11 - TSS region transcription start site region 43827
Tssr43828 4 133875260 to 133875274 14 - TSS region transcription start site region 43828
Gm12985 4 133882945 to 133883127 182 - pseudogene predicted gene 12985
Gm22523 4 133883399 to 133883498 99 - snRNA gene predicted gene, 22523
Cpgi15018 4 133887040 to 133888452 1412 CpG island CpG island 15018
Tssr43829 4 133887744 to 133887762 18 - TSS region transcription start site region 43829
Tssr43830 4 133887765 to 133887804 39 - TSS region transcription start site region 43830
Tssr43831 4 133887823 to 133887824 1 - TSS region transcription start site region 43831
Tssr43832 4 133899469 to 133899493 24 - TSS region transcription start site region 43832
Cpgi15019 4 133910454 to 133911296 842 CpG island CpG island 15019
4930429E23Rik 4 133910553 to 133911443 890 unclassified gene RIKEN cDNA 4930429E23 gene