Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133088618-134178631

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357 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm26615 4 133085474 to 133089146 3672 + lincRNA gene predicted gene, 26615
Cpgi14987 4 133092501 to 133092859 358 CpG island CpG island 14987
Tssr39448 4 133092529 to 133092540 11 + TSS region transcription start site region 39448
Tssr43736 4 133095325 to 133095353 28 - TSS region transcription start site region 43736
Tssr39449 4 133096856 to 133096863 7 + TSS region transcription start site region 39449
Tssr43737 4 133103862 to 133103873 11 - TSS region transcription start site region 43737
Tssr39450 4 133104526 to 133104536 10 + TSS region transcription start site region 39450
n-TGgcc1 4 133114496 to 133114566 70 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon GCC)
Tssr39451 4 133117188 to 133117203 15 + TSS region transcription start site region 39451
Cpgi14988 4 133129621 to 133129827 206 CpG island CpG island 14988
Cpgi14989 4 133130383 to 133131202 819 CpG island CpG island 14989
Wasf2 4 133130531 to 133199723 69192 + protein coding gene WAS protein family, member 2
Tssr39452 4 133130534 to 133130590 56 + TSS region transcription start site region 39452
Tssr39453 4 133130613 to 133130636 23 + TSS region transcription start site region 39453
Tssr39454 4 133130642 to 133130656 14 + TSS region transcription start site region 39454
Tssr39455 4 133132860 to 133132867 7 + TSS region transcription start site region 39455
D4Mit1007 4 133151662 to 133151799 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1007
D4Mit1000 4 133151816 to 133151944 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1000
Tssr43738 4 133159247 to 133159254 7 - TSS region transcription start site region 43738
Tssr43739 4 133159261 to 133159273 12 - TSS region transcription start site region 43739
Tssr43740 4 133159291 to 133159300 9 - TSS region transcription start site region 43740
Tssr43741 4 133169638 to 133169643 5 - TSS region transcription start site region 43741
Gm24636 4 133171427 to 133171714 287 - unclassified non-coding RNA gene predicted gene, 24636
Tssr1326 4 133172689 to 133172693 4 + TSS region transcription start site region 1326
Tssr39456 4 133174471 to 133174475 4 + TSS region transcription start site region 39456
Tssr39457 4 133174525 to 133174537 12 + TSS region transcription start site region 39457
Tssr39458 4 133174539 to 133174572 33 + TSS region transcription start site region 39458
Tssr39459 4 133176014 to 133176029 15 + TSS region transcription start site region 39459
Tssr39460 4 133176336 to 133176361 25 + TSS region transcription start site region 39460
Tssr39461 4 133185041 to 133185074 33 + TSS region transcription start site region 39461
Tssr39462 4 133185621 to 133185647 26 + TSS region transcription start site region 39462
Tssr39463 4 133185662 to 133185725 63 + TSS region transcription start site region 39463
Tssr39464 4 133189136 to 133189160 24 + TSS region transcription start site region 39464
Tssr39465 4 133192088 to 133192117 29 + TSS region transcription start site region 39465
Tssr39466 4 133192187 to 133192209 22 + TSS region transcription start site region 39466
Tssr39467 4 133194500 to 133194540 40 + TSS region transcription start site region 39467
Tssr43742 4 133194514 to 133194528 14 - TSS region transcription start site region 43742
Mir7017 4 133195655 to 133195716 61 + miRNA gene microRNA 7017
Cpgi14990 4 133200397 to 133200603 206 CpG island CpG island 14990
Gpr3 4 133209340 to 133212536 3196 - protein coding gene G-protein coupled receptor 3
Cpgi14991 4 133210518 to 133210920 402 CpG island CpG island 14991
Cpgi14992 4 133211997 to 133213342 1345 CpG island CpG island 14992
Tssr43743 4 133212480 to 133212501 21 - TSS region transcription start site region 43743
Cpgi14993 4 133220768 to 133221071 303 CpG island CpG island 14993
Cd164l2 4 133220809 to 133224554 3745 + protein coding gene CD164 sialomucin-like 2
Tssr39468 4 133220858 to 133220906 48 + TSS region transcription start site region 39468
Tssr39469 4 133220911 to 133220927 16 + TSS region transcription start site region 39469
Tssr39470 4 133226543 to 133226546 3 + TSS region transcription start site region 39470
Fcnc-ps 4 133231545 to 133239286 7741 + pseudogene ficolin C pseudogene
Cpgi14994 4 133240549 to 133241877 1328 CpG island CpG island 14994
Tssr39471 4 133240778 to 133240827 49 + TSS region transcription start site region 39471
Map3k6 4 133240818 to 133252929 12111 + protein coding gene mitogen-activated protein kinase kinase kinase 6
Tssr43744 4 133241385 to 133241446 61 - TSS region transcription start site region 43744
Cpgi14995 4 133250628 to 133251650 1022 CpG island CpG island 14995
Tssr39472 4 133251353 to 133251388 35 + TSS region transcription start site region 39472
Tssr39473 4 133251410 to 133251421 11 + TSS region transcription start site region 39473
Tssr39474 4 133251523 to 133251548 25 + TSS region transcription start site region 39474
Sytl1 4 133253090 to 133263087 9997 - protein coding gene synaptotagmin-like 1
Cpgi14996 4 133256790 to 133257121 331 CpG island CpG island 14996
Tssr43745 4 133263042 to 133263135 93 - TSS region transcription start site region 43745
Tmem222 4 133266045 to 133277790 11745 - protein coding gene transmembrane protein 222
Cpgi14997 4 133277031 to 133278110 1079 CpG island CpG island 14997
Tssr43746 4 133277593 to 133277674 81 - TSS region transcription start site region 43746
Tssr43747 4 133277683 to 133277712 29 - TSS region transcription start site region 43747
Tssr43748 4 133277730 to 133277804 74 - TSS region transcription start site region 43748
Gm13259 4 133280857 to 133281312 455 - pseudogene predicted gene 13259
Gm3627 4 133292207 to 133294212 2005 protein coding gene predicted gene 3627
Wdtc1 4 133292466 to 133353467 61001 - protein coding gene WD and tetratricopeptide repeats 1
Cpgi14998 4 133338702 to 133339879 1177 CpG island CpG island 14998
Tssr43749 4 133339164 to 133339183 19 - TSS region transcription start site region 43749
Tssr43750 4 133339184 to 133339234 50 - TSS region transcription start site region 43750
Tssr43751 4 133339238 to 133339263 25 - TSS region transcription start site region 43751
Tssr43752 4 133339283 to 133339334 51 - TSS region transcription start site region 43752
Tssr43753 4 133352833 to 133352851 18 - TSS region transcription start site region 43753
Tssr43754 4 133352852 to 133352876 24 - TSS region transcription start site region 43754
Tssr43755 4 133352887 to 133352897 10 - TSS region transcription start site region 43755
Tssr43756 4 133353447 to 133353474 27 - TSS region transcription start site region 43756
Tssr43757 4 133353476 to 133353505 29 - TSS region transcription start site region 43757
Cpgi14999 4 133369629 to 133370122 493 CpG island CpG island 14999
Tssr39475 4 133369702 to 133369709 7 + TSS region transcription start site region 39475
Slc9a1 4 133369711 to 133423702 53991 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 1
Tssr39476 4 133369720 to 133369743 23 + TSS region transcription start site region 39476
Tssr39477 4 133369765 to 133369780 15 + TSS region transcription start site region 39477
Mir5122 4 133369776 to 133369864 88 + miRNA gene microRNA 5122
Tssr39478 4 133370189 to 133370229 40 + TSS region transcription start site region 39478
Tssr1327 4 133378757 to 133378761 4 + TSS region transcription start site region 1327
Tssr39479 4 133403942 to 133403945 3 + TSS region transcription start site region 39479
Tssr39480 4 133412016 to 133412031 15 + TSS region transcription start site region 39480
Tssr39481 4 133412165 to 133412177 12 + TSS region transcription start site region 39481
Tssr39482 4 133415422 to 133415440 18 + TSS region transcription start site region 39482
Tssr43758 4 133417146 to 133417153 7 - TSS region transcription start site region 43758
Tssr43759 4 133417164 to 133417173 9 - TSS region transcription start site region 43759
Tssr39483 4 133417203 to 133417229 26 + TSS region transcription start site region 39483
D4Dcr27 4 133427364 to 133427461 97 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 27
Bcmd2 4 133427367 to 150704994 17277627 QTL B cell maturation defect 2
D4Mit204 4 133427367 to 133427471 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 204
Femwf13 4 133427367 to 133427471 104 QTL femur work to failure 13
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
1700091J24Rik 4 133432739 to 133434897 2158 - lncRNA gene RIKEN cDNA 1700091J24 gene
Tssr43760 4 133432924 to 133432932 8 - TSS region transcription start site region 43760
Tssr43761 4 133432980 to 133433016 36 - TSS region transcription start site region 43761
Gm42322 4 133437060 to 133440366 3306 - lncRNA gene predicted gene, 42322
Tssr39484 4 133443316 to 133443335 19 + TSS region transcription start site region 39484
Cpgi15000 4 133468070 to 133468441 371 CpG island CpG island 15000
Gm13257 4 133479356 to 133482526 3170 - antisense lncRNA gene predicted gene 13257
Cpgi15001 4 133479703 to 133480981 1278 CpG island CpG island 15001
Tssr39485 4 133480126 to 133480149 23 + TSS region transcription start site region 39485
Tent5b 4 133480132 to 133487938 7806 + protein coding gene terminal nucleotidyltransferase 5B
Cpgi15002 4 133484287 to 133484534 247 CpG island CpG island 15002
Cpgi15003 4 133486082 to 133486938 856 CpG island CpG island 15003
Trnp1 4 133491100 to 133498550 7450 - protein coding gene TMF1-regulated nuclear protein 1
Cpgi15004 4 133497405 to 133498909 1504 CpG island CpG island 15004
Tssr43762 4 133497772 to 133497788 16 - TSS region transcription start site region 43762
Tssr43763 4 133498478 to 133498508 30 - TSS region transcription start site region 43763
Tssr43764 4 133498514 to 133498531 17 - TSS region transcription start site region 43764
Tssr43765 4 133498538 to 133498556 18 - TSS region transcription start site region 43765
Gm42323 4 133512874 to 133522320 9446 - protein coding gene predicted gene, 42323
Tssr39486 4 133518721 to 133518732 11 + TSS region transcription start site region 39486
Tssr39487 4 133518737 to 133518750 13 + TSS region transcription start site region 39487
Cpgi15005 4 133518767 to 133519795 1028 CpG island CpG island 15005
Kdf1 4 133518963 to 133530790 11827 + protein coding gene keratinocyte differentiation factor 1
Tssr39488 4 133518981 to 133519010 29 + TSS region transcription start site region 39488
Cpgi15006 4 133528549 to 133528969 420 CpG island CpG island 15006
Nudc 4 133532542 to 133545996 13454 - protein coding gene nudC nuclear distribution protein
Tssr43766 4 133536769 to 133536784 15 - TSS region transcription start site region 43766
Cpgi15007 4 133545401 to 133546268 867 CpG island CpG island 15007
Tssr43767 4 133545618 to 133545628 10 - TSS region transcription start site region 43767
Tssr43768 4 133545906 to 133546011 105 - TSS region transcription start site region 43768
Tssr39489 4 133553370 to 133553393 23 + TSS region transcription start site region 39489
Nr0b2 4 133553376 to 133556536 3160 + protein coding gene nuclear receptor subfamily 0, group B, member 2
Gm23158 4 133558824 to 133558949 125 - miRNA gene predicted gene, 23158
Cpgi15008 4 133574142 to 133575320 1178 CpG island CpG island 15008
Tssr39490 4 133574728 to 133574771 43 + TSS region transcription start site region 39490
Gpatch3 4 133574745 to 133584242 9497 + protein coding gene G patch domain containing 3
Cpgi15009 4 133584018 to 133584953 935 CpG island CpG island 15009
Tssr39491 4 133584337 to 133584348 11 + TSS region transcription start site region 39491
Tssr39492 4 133584355 to 133584415 60 + TSS region transcription start site region 39492
Gpn2 4 133584373 to 133591735 7362 + protein coding gene GPN-loop GTPase 2
Tssr39493 4 133584419 to 133584426 7 + TSS region transcription start site region 39493
Gm42324 4 133594939 to 133596007 1068 - lncRNA gene predicted gene, 42324
Tssr43769 4 133598765 to 133598788 23 - TSS region transcription start site region 43769
Tssr43770 4 133598797 to 133598830 33 - TSS region transcription start site region 43770
Cpgi15010 4 133599286 to 133600394 1108 CpG island CpG island 15010
Sfn 4 133600556 to 133602168 1612 - protein coding gene stratifin
Cpgi15011 4 133601454 to 133601924 470 CpG island CpG island 15011
Tssr43771 4 133601477 to 133601515 38 - TSS region transcription start site region 43771
Tssr43772 4 133601822 to 133601838 16 - TSS region transcription start site region 43772
Tssr43773 4 133601839 to 133601868 29 - TSS region transcription start site region 43773
Tssr43774 4 133601871 to 133601889 18 - TSS region transcription start site region 43774
Tssr43775 4 133601892 to 133601904 12 - TSS region transcription start site region 43775
Zdhhc18 4 133604656 to 133633480 28824 - protein coding gene zinc finger, DHHC domain containing 18
Tssr43776 4 133620688 to 133620710 22 - TSS region transcription start site region 43776
Tssr43777 4 133620735 to 133620762 27 - TSS region transcription start site region 43777
Tssr43778 4 133622522 to 133622533 11 - TSS region transcription start site region 43778
Tssr43779 4 133622558 to 133622577 19 - TSS region transcription start site region 43779
Tssr39494 4 133622709 to 133622746 37 + TSS region transcription start site region 39494
Tssr43780 4 133623069 to 133623076 7 - TSS region transcription start site region 43780
Tssr43781 4 133625600 to 133625629 29 - TSS region transcription start site region 43781
Tssr39495 4 133625987 to 133626009 22 + TSS region transcription start site region 39495
Tssr39496 4 133629540 to 133629549 9 + TSS region transcription start site region 39496
Tssr43782 4 133631130 to 133631158 28 - TSS region transcription start site region 43782
Tssr43783 4 133632120 to 133632137 17 - TSS region transcription start site region 43783
Tssr43784 4 133632235 to 133632268 33 - TSS region transcription start site region 43784
Tssr39497 4 133632238 to 133632264 26 + TSS region transcription start site region 39497
Tssr39498 4 133632339 to 133632363 24 + TSS region transcription start site region 39498
Cpgi15012 4 133632624 to 133633999 1375 CpG island CpG island 15012
Tssr39499 4 133633085 to 133633106 21 + TSS region transcription start site region 39499
Tssr43785 4 133633419 to 133633525 106 - TSS region transcription start site region 43785
Tssr43786 4 133633618 to 133633631 13 - TSS region transcription start site region 43786
Gm13213 4 133638210 to 133638683 473 - pseudogene predicted gene 13213
Cpgi15013 4 133645632 to 133645962 330 CpG island CpG island 15013
Gm22662 4 133654002 to 133654257 255 + unclassified non-coding RNA gene predicted gene, 22662
Tssr43787 4 133658838 to 133658844 6 - TSS region transcription start site region 43787
Tssr39500 4 133658956 to 133658978 22 + TSS region transcription start site region 39500
Pigv 4 133660387 to 133672647 12260 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class V
Tssr43788 4 133660745 to 133660783 38 - TSS region transcription start site region 43788
Tssr43789 4 133660864 to 133660910 46 - TSS region transcription start site region 43789
Tssr43790 4 133666671 to 133666678 7 - TSS region transcription start site region 43790
Cpgi15014 4 133672185 to 133673137 952 CpG island CpG island 15014
Tssr43791 4 133672601 to 133672652 51 - TSS region transcription start site region 43791
Tssr39501 4 133672673 to 133672733 60 + TSS region transcription start site region 39501
1700041L08Rik 4 133672718 to 133673236 518 unclassified gene RIKEN cDNA 1700041L08 gene
Tssr43792 4 133672982 to 133673002 20 - TSS region transcription start site region 43792
Tssr43793 4 133673137 to 133673160 23 - TSS region transcription start site region 43793
Tssr43794 4 133673216 to 133673242 26 - TSS region transcription start site region 43794
Tssr43795 4 133674067 to 133674115 48 - TSS region transcription start site region 43795
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr1328 4 133686302 to 133686307 5 + TSS region transcription start site region 1328
Tssr43796 4 133686673 to 133686694 21 - TSS region transcription start site region 43796
Mir7227 4 133717050 to 133717108 58 - miRNA gene microRNA 7227
Tssr43797 4 133720783 to 133720828 45 - TSS region transcription start site region 43797
Tssr43798 4 133720864 to 133720881 17 - TSS region transcription start site region 43798
Tssr43799 4 133720886 to 133720976 90 - TSS region transcription start site region 43799
Tssr43800 4 133722896 to 133722909 13 - TSS region transcription start site region 43800
Tssr43801 4 133722990 to 133723030 40 - TSS region transcription start site region 43801
Tssr43802 4 133723159 to 133723163 4 - TSS region transcription start site region 43802
Tssr43803 4 133751618 to 133751629 11 - TSS region transcription start site region 43803