Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132869446-133209471

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx12 4 132854064 to 132884458 30394 - protein coding gene syntaxin 12
C530007A02Rik 4 132882169 to 132883336 1167 unclassified gene RIKEN cDNA C530007A02 gene
Tssr43721 4 132882437 to 132882441 4 - TSS region transcription start site region 43721
Tssr43722 4 132883333 to 132883339 6 - TSS region transcription start site region 43722
Cpgi14976 4 132883749 to 132884991 1242 CpG island CpG island 14976
Tssr39425 4 132883937 to 132883982 45 + TSS region transcription start site region 39425
Tssr43723 4 132884406 to 132884501 95 - TSS region transcription start site region 43723
Tssr43724 4 132884516 to 132884523 7 - TSS region transcription start site region 43724
Tssr39426 4 132884527 to 132884552 25 + TSS region transcription start site region 39426
Tssr43725 4 132884770 to 132884790 20 - TSS region transcription start site region 43725
Gm13033 4 132884773 to 132886416 1643 + pseudogene predicted gene 13033
Fam76a 4 132899213 to 132922558 23345 - protein coding gene family with sequence similarity 76, member A
Tssr39427 4 132918146 to 132918151 5 + TSS region transcription start site region 39427
Tssr43726 4 132921143 to 132921147 4 - TSS region transcription start site region 43726
Cpgi14977 4 132921982 to 132923210 1228 CpG island CpG island 14977
Tssr43727 4 132922487 to 132922544 57 - TSS region transcription start site region 43727
Tssr43728 4 132922547 to 132922563 16 - TSS region transcription start site region 43728
Tssr43729 4 132922590 to 132922601 11 - TSS region transcription start site region 43729
Tssr43730 4 132922605 to 132922613 8 - TSS region transcription start site region 43730
Tssr43731 4 132922620 to 132922626 6 - TSS region transcription start site region 43731
Tssr43732 4 132922627 to 132922631 4 - TSS region transcription start site region 43732
Gm24913 4 132931211 to 132931317 106 - snRNA gene predicted gene, 24913
Cpgi14978 4 132939501 to 132939766 265 CpG island CpG island 14978
Gm36518 4 132948422 to 132960681 12259 - lncRNA gene predicted gene, 36518
Cpgi14979 4 132950060 to 132950316 256 CpG island CpG island 14979
Tssr39428 4 132959676 to 132959682 6 + TSS region transcription start site region 39428
Tssr39429 4 132972335 to 132972343 8 + TSS region transcription start site region 39429
Cpgi14980 4 132973947 to 132974134 187 CpG island CpG island 14980
Tssr39430 4 132974093 to 132974096 3 + TSS region transcription start site region 39430
Fgr 4 132974095 to 133001893 27798 + protein coding gene FGR proto-oncogene, Src family tyrosine kinase
Tssr39431 4 132974123 to 132974155 32 + TSS region transcription start site region 39431
Tssr39432 4 132974157 to 132974162 5 + TSS region transcription start site region 39432
Tssr39433 4 132974172 to 132974196 24 + TSS region transcription start site region 39433
Tssr39434 4 132974202 to 132974217 15 + TSS region transcription start site region 39434
Cpgi14981 4 132974947 to 132975167 220 CpG island CpG island 14981
Tssr39435 4 132977756 to 132977765 9 + TSS region transcription start site region 39435
Gm36599 4 133002707 to 133008152 5445 - lncRNA gene predicted gene, 36599
Cpgi14982 4 133010779 to 133013141 2362 CpG island CpG island 14982
Ahdc1 4 133011265 to 133078110 66845 + protein coding gene AT hook, DNA binding motif, containing 1
Tssr39436 4 133011483 to 133011492 9 + TSS region transcription start site region 39436
Tssr39437 4 133011518 to 133011546 28 + TSS region transcription start site region 39437
Tssr39438 4 133011794 to 133011822 28 + TSS region transcription start site region 39438
Cpgi14983 4 133022224 to 133022423 199 CpG island CpG island 14983
Tssr1325 4 133035623 to 133035627 4 + TSS region transcription start site region 1325
Cpgi14984 4 133038437 to 133039787 1350 CpG island CpG island 14984
Tssr39439 4 133039361 to 133039383 22 + TSS region transcription start site region 39439
Tssr39440 4 133039391 to 133039405 14 + TSS region transcription start site region 39440
Tssr39441 4 133039446 to 133039471 25 + TSS region transcription start site region 39441
Tssr39442 4 133039482 to 133039495 13 + TSS region transcription start site region 39442
Tssr39443 4 133039510 to 133039525 15 + TSS region transcription start site region 39443
Tssr39444 4 133039543 to 133039560 17 + TSS region transcription start site region 39444
Cpgi14985 4 133040018 to 133040170 152 CpG island CpG island 14985
Tssr39445 4 133055100 to 133055104 4 + TSS region transcription start site region 39445
Tssr43733 4 133056170 to 133056182 12 - TSS region transcription start site region 43733
Tssr39446 4 133068269 to 133068273 4 + TSS region transcription start site region 39446
Tssr43734 4 133070877 to 133070882 5 - TSS region transcription start site region 43734
Tssr43735 4 133070894 to 133070905 11 - TSS region transcription start site region 43735
Tssr39447 4 133077518 to 133077533 15 + TSS region transcription start site region 39447
Cpgi14986 4 133084981 to 133085885 904 CpG island CpG island 14986
Gm26615 4 133085474 to 133089146 3672 + lincRNA gene predicted gene, 26615
Cpgi14987 4 133092501 to 133092859 358 CpG island CpG island 14987
Tssr39448 4 133092529 to 133092540 11 + TSS region transcription start site region 39448
Tssr43736 4 133095325 to 133095353 28 - TSS region transcription start site region 43736
Tssr39449 4 133096856 to 133096863 7 + TSS region transcription start site region 39449
Tssr43737 4 133103862 to 133103873 11 - TSS region transcription start site region 43737
Tssr39450 4 133104526 to 133104536 10 + TSS region transcription start site region 39450
n-TGgcc1 4 133114496 to 133114566 70 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon GCC)
Tssr39451 4 133117188 to 133117203 15 + TSS region transcription start site region 39451
Cpgi14988 4 133129621 to 133129827 206 CpG island CpG island 14988
Cpgi14989 4 133130383 to 133131202 819 CpG island CpG island 14989
Wasf2 4 133130531 to 133199723 69192 + protein coding gene WAS protein family, member 2
Tssr39452 4 133130534 to 133130590 56 + TSS region transcription start site region 39452
Tssr39453 4 133130613 to 133130636 23 + TSS region transcription start site region 39453
Tssr39454 4 133130642 to 133130656 14 + TSS region transcription start site region 39454
Tssr39455 4 133132860 to 133132867 7 + TSS region transcription start site region 39455
D4Mit1007 4 133151662 to 133151799 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1007
D4Mit1000 4 133151816 to 133151944 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1000
Tssr43738 4 133159247 to 133159254 7 - TSS region transcription start site region 43738
Tssr43739 4 133159261 to 133159273 12 - TSS region transcription start site region 43739
Tssr43740 4 133159291 to 133159300 9 - TSS region transcription start site region 43740
Tssr43741 4 133169638 to 133169643 5 - TSS region transcription start site region 43741
Gm24636 4 133171427 to 133171714 287 - unclassified non-coding RNA gene predicted gene, 24636
Tssr1326 4 133172689 to 133172693 4 + TSS region transcription start site region 1326
Tssr39456 4 133174471 to 133174475 4 + TSS region transcription start site region 39456
Tssr39457 4 133174525 to 133174537 12 + TSS region transcription start site region 39457
Tssr39458 4 133174539 to 133174572 33 + TSS region transcription start site region 39458
Tssr39459 4 133176014 to 133176029 15 + TSS region transcription start site region 39459
Tssr39460 4 133176336 to 133176361 25 + TSS region transcription start site region 39460
Tssr39461 4 133185041 to 133185074 33 + TSS region transcription start site region 39461
Tssr39462 4 133185621 to 133185647 26 + TSS region transcription start site region 39462
Tssr39463 4 133185662 to 133185725 63 + TSS region transcription start site region 39463
Tssr39464 4 133189136 to 133189160 24 + TSS region transcription start site region 39464
Tssr39465 4 133192088 to 133192117 29 + TSS region transcription start site region 39465
Tssr39466 4 133192187 to 133192209 22 + TSS region transcription start site region 39466
Tssr39467 4 133194500 to 133194540 40 + TSS region transcription start site region 39467
Tssr43742 4 133194514 to 133194528 14 - TSS region transcription start site region 43742
Mir7017 4 133195655 to 133195716 61 + miRNA gene microRNA 7017
Cpgi14990 4 133200397 to 133200603 206 CpG island CpG island 14990
Gpr3 4 133209340 to 133212536 3196 - protein coding gene G-protein coupled receptor 3