Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132653159-134793163

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621 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Eya3 4 132639014 to 132724765 85751 + protein coding gene EYA transcriptional coactivator and phosphatase 3
Tssr39413 4 132656683 to 132656705 22 + TSS region transcription start site region 39413
Tssr39414 4 132690656 to 132690664 8 + TSS region transcription start site region 39414
Tssr39415 4 132709938 to 132709969 31 + TSS region transcription start site region 39415
Tssr39416 4 132716252 to 132716254 2 + TSS region transcription start site region 39416
Xkr8 4 132724897 to 132732546 7649 - protein coding gene X-linked Kx blood group related 8
Tssr43694 4 132727627 to 132727640 13 - TSS region transcription start site region 43694
Tssr43695 4 132731710 to 132731721 11 - TSS region transcription start site region 43695
Tssr39417 4 132731826 to 132731843 17 + TSS region transcription start site region 39417
Cpgi14969 4 132732201 to 132732633 432 CpG island CpG island 14969
Tssr43696 4 132732427 to 132732438 11 - TSS region transcription start site region 43696
Tssr43697 4 132732514 to 132732558 44 - TSS region transcription start site region 43697
Tssr43698 4 132732565 to 132732586 21 - TSS region transcription start site region 43698
Smpdl3b 4 132732966 to 132757171 24205 - protein coding gene sphingomyelin phosphodiesterase, acid-like 3B
Cpgi14970 4 132733457 to 132733786 329 CpG island CpG island 14970
Tssr43699 4 132734825 to 132734836 11 - TSS region transcription start site region 43699
Tssr43700 4 132734837 to 132734856 19 - TSS region transcription start site region 43700
Tssr39418 4 132737625 to 132737629 4 + TSS region transcription start site region 39418
Tssr43701 4 132747254 to 132747257 3 - TSS region transcription start site region 43701
Cpgi14971 4 132756903 to 132757331 428 CpG island CpG island 14971
Tssr43702 4 132757104 to 132757107 3 - TSS region transcription start site region 43702
Tssr43703 4 132757107 to 132757152 45 - TSS region transcription start site region 43703
Tssr43704 4 132757162 to 132757187 25 - TSS region transcription start site region 43704
Tssr43705 4 132757229 to 132757240 11 - TSS region transcription start site region 43705
Tssr43706 4 132757248 to 132757259 11 - TSS region transcription start site region 43706
Cpgi14972 4 132768007 to 132768976 969 CpG island CpG island 14972
Tssr39419 4 132768325 to 132768390 65 + TSS region transcription start site region 39419
Rpa2 4 132768360 to 132778746 10386 + protein coding gene replication protein A2
Themis2 4 132781837 to 132796364 14527 - protein coding gene thymocyte selection associated family member 2
Tssr43707 4 132782474 to 132782487 13 - TSS region transcription start site region 43707
Tssr43708 4 132783438 to 132783454 16 - TSS region transcription start site region 43708
Tssr43709 4 132783473 to 132783501 28 - TSS region transcription start site region 43709
Tssr43710 4 132783948 to 132783965 17 - TSS region transcription start site region 43710
Tssr43711 4 132785251 to 132785291 40 - TSS region transcription start site region 43711
Tssr43712 4 132785368 to 132785381 13 - TSS region transcription start site region 43712
Tssr43713 4 132785469 to 132785478 9 - TSS region transcription start site region 43713
Tssr43714 4 132789895 to 132789911 16 - TSS region transcription start site region 43714
Tssr43715 4 132790878 to 132790884 6 - TSS region transcription start site region 43715
Tssr43716 4 132794102 to 132794112 10 - TSS region transcription start site region 43716
Tssr1323 4 132794285 to 132794296 11 + TSS region transcription start site region 1323
Tssr39420 4 132794974 to 132794988 14 + TSS region transcription start site region 39420
Tssr39421 4 132795037 to 132795042 5 + TSS region transcription start site region 39421
Tssr39422 4 132795051 to 132795063 12 + TSS region transcription start site region 39422
Tssr39423 4 132795067 to 132795076 9 + TSS region transcription start site region 39423
Tssr39424 4 132795279 to 132795299 20 + TSS region transcription start site region 39424
Cpgi14973 4 132796072 to 132796511 439 CpG island CpG island 14973
Tssr43717 4 132796361 to 132796389 28 - TSS region transcription start site region 43717
Tssr1324 4 132796395 to 132796417 22 - TSS region transcription start site region 1324
Cpgi14974 4 132801942 to 132802284 342 CpG island CpG island 14974
Gm13022 4 132801970 to 132802254 284 - pseudogene predicted gene 13022
Ppp1r8 4 132826929 to 132843169 16240 - protein coding gene protein phosphatase 1, regulatory subunit 8
Gm22767 4 132838383 to 132838547 164 - snoRNA gene predicted gene, 22767
Cpgi14975 4 132842379 to 132843465 1086 CpG island CpG island 14975
Tssr43718 4 132842943 to 132842945 2 - TSS region transcription start site region 43718
Tssr43719 4 132843111 to 132843184 73 - TSS region transcription start site region 43719
Tssr43720 4 132853408 to 132853411 3 - TSS region transcription start site region 43720
Stx12 4 132854064 to 132884458 30394 - protein coding gene syntaxin 12
C530007A02Rik 4 132882169 to 132883336 1167 unclassified gene RIKEN cDNA C530007A02 gene
Tssr43721 4 132882437 to 132882441 4 - TSS region transcription start site region 43721
Tssr43722 4 132883333 to 132883339 6 - TSS region transcription start site region 43722
Cpgi14976 4 132883749 to 132884991 1242 CpG island CpG island 14976
Tssr39425 4 132883937 to 132883982 45 + TSS region transcription start site region 39425
Tssr43723 4 132884406 to 132884501 95 - TSS region transcription start site region 43723
Tssr43724 4 132884516 to 132884523 7 - TSS region transcription start site region 43724
Tssr39426 4 132884527 to 132884552 25 + TSS region transcription start site region 39426
Tssr43725 4 132884770 to 132884790 20 - TSS region transcription start site region 43725
Gm13033 4 132884773 to 132886416 1643 + pseudogene predicted gene 13033
Fam76a 4 132899213 to 132922558 23345 - protein coding gene family with sequence similarity 76, member A
Tssr39427 4 132918146 to 132918151 5 + TSS region transcription start site region 39427
Tssr43726 4 132921143 to 132921147 4 - TSS region transcription start site region 43726
Cpgi14977 4 132921982 to 132923210 1228 CpG island CpG island 14977
Tssr43727 4 132922487 to 132922544 57 - TSS region transcription start site region 43727
Tssr43728 4 132922547 to 132922563 16 - TSS region transcription start site region 43728
Tssr43729 4 132922590 to 132922601 11 - TSS region transcription start site region 43729
Tssr43730 4 132922605 to 132922613 8 - TSS region transcription start site region 43730
Tssr43731 4 132922620 to 132922626 6 - TSS region transcription start site region 43731
Tssr43732 4 132922627 to 132922631 4 - TSS region transcription start site region 43732
Gm24913 4 132931211 to 132931317 106 - snRNA gene predicted gene, 24913
Cpgi14978 4 132939501 to 132939766 265 CpG island CpG island 14978
Gm36518 4 132948422 to 132960681 12259 - lncRNA gene predicted gene, 36518
Cpgi14979 4 132950060 to 132950316 256 CpG island CpG island 14979
Tssr39428 4 132959676 to 132959682 6 + TSS region transcription start site region 39428
Tssr39429 4 132972335 to 132972343 8 + TSS region transcription start site region 39429
Cpgi14980 4 132973947 to 132974134 187 CpG island CpG island 14980
Tssr39430 4 132974093 to 132974096 3 + TSS region transcription start site region 39430
Fgr 4 132974095 to 133001893 27798 + protein coding gene FGR proto-oncogene, Src family tyrosine kinase
Tssr39431 4 132974123 to 132974155 32 + TSS region transcription start site region 39431
Tssr39432 4 132974157 to 132974162 5 + TSS region transcription start site region 39432
Tssr39433 4 132974172 to 132974196 24 + TSS region transcription start site region 39433
Tssr39434 4 132974202 to 132974217 15 + TSS region transcription start site region 39434
Cpgi14981 4 132974947 to 132975167 220 CpG island CpG island 14981
Tssr39435 4 132977756 to 132977765 9 + TSS region transcription start site region 39435
Gm36599 4 133002707 to 133008152 5445 - lncRNA gene predicted gene, 36599
Cpgi14982 4 133010779 to 133013141 2362 CpG island CpG island 14982
Ahdc1 4 133011265 to 133078110 66845 + protein coding gene AT hook, DNA binding motif, containing 1
Tssr39436 4 133011483 to 133011492 9 + TSS region transcription start site region 39436
Tssr39437 4 133011518 to 133011546 28 + TSS region transcription start site region 39437
Tssr39438 4 133011794 to 133011822 28 + TSS region transcription start site region 39438
Cpgi14983 4 133022224 to 133022423 199 CpG island CpG island 14983
Tssr1325 4 133035623 to 133035627 4 + TSS region transcription start site region 1325
Cpgi14984 4 133038437 to 133039787 1350 CpG island CpG island 14984
Tssr39439 4 133039361 to 133039383 22 + TSS region transcription start site region 39439
Tssr39440 4 133039391 to 133039405 14 + TSS region transcription start site region 39440
Tssr39441 4 133039446 to 133039471 25 + TSS region transcription start site region 39441
Tssr39442 4 133039482 to 133039495 13 + TSS region transcription start site region 39442
Tssr39443 4 133039510 to 133039525 15 + TSS region transcription start site region 39443
Tssr39444 4 133039543 to 133039560 17 + TSS region transcription start site region 39444
Cpgi14985 4 133040018 to 133040170 152 CpG island CpG island 14985
Tssr39445 4 133055100 to 133055104 4 + TSS region transcription start site region 39445
Tssr43733 4 133056170 to 133056182 12 - TSS region transcription start site region 43733
Tssr39446 4 133068269 to 133068273 4 + TSS region transcription start site region 39446
Tssr43734 4 133070877 to 133070882 5 - TSS region transcription start site region 43734
Tssr43735 4 133070894 to 133070905 11 - TSS region transcription start site region 43735
Tssr39447 4 133077518 to 133077533 15 + TSS region transcription start site region 39447
Cpgi14986 4 133084981 to 133085885 904 CpG island CpG island 14986
Gm26615 4 133085474 to 133089146 3672 + lincRNA gene predicted gene, 26615
Cpgi14987 4 133092501 to 133092859 358 CpG island CpG island 14987
Tssr39448 4 133092529 to 133092540 11 + TSS region transcription start site region 39448
Tssr43736 4 133095325 to 133095353 28 - TSS region transcription start site region 43736
Tssr39449 4 133096856 to 133096863 7 + TSS region transcription start site region 39449
Tssr43737 4 133103862 to 133103873 11 - TSS region transcription start site region 43737
Tssr39450 4 133104526 to 133104536 10 + TSS region transcription start site region 39450
n-TGgcc1 4 133114496 to 133114566 70 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon GCC)
Tssr39451 4 133117188 to 133117203 15 + TSS region transcription start site region 39451
Cpgi14988 4 133129621 to 133129827 206 CpG island CpG island 14988
Cpgi14989 4 133130383 to 133131202 819 CpG island CpG island 14989
Wasf2 4 133130531 to 133199723 69192 + protein coding gene WAS protein family, member 2
Tssr39452 4 133130534 to 133130590 56 + TSS region transcription start site region 39452
Tssr39453 4 133130613 to 133130636 23 + TSS region transcription start site region 39453
Tssr39454 4 133130642 to 133130656 14 + TSS region transcription start site region 39454
Tssr39455 4 133132860 to 133132867 7 + TSS region transcription start site region 39455
D4Mit1007 4 133151662 to 133151799 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1007
D4Mit1000 4 133151816 to 133151944 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1000
Tssr43738 4 133159247 to 133159254 7 - TSS region transcription start site region 43738
Tssr43739 4 133159261 to 133159273 12 - TSS region transcription start site region 43739
Tssr43740 4 133159291 to 133159300 9 - TSS region transcription start site region 43740
Tssr43741 4 133169638 to 133169643 5 - TSS region transcription start site region 43741
Gm24636 4 133171427 to 133171714 287 - unclassified non-coding RNA gene predicted gene, 24636
Tssr1326 4 133172689 to 133172693 4 + TSS region transcription start site region 1326
Tssr39456 4 133174471 to 133174475 4 + TSS region transcription start site region 39456
Tssr39457 4 133174525 to 133174537 12 + TSS region transcription start site region 39457
Tssr39458 4 133174539 to 133174572 33 + TSS region transcription start site region 39458
Tssr39459 4 133176014 to 133176029 15 + TSS region transcription start site region 39459
Tssr39460 4 133176336 to 133176361 25 + TSS region transcription start site region 39460
Tssr39461 4 133185041 to 133185074 33 + TSS region transcription start site region 39461
Tssr39462 4 133185621 to 133185647 26 + TSS region transcription start site region 39462
Tssr39463 4 133185662 to 133185725 63 + TSS region transcription start site region 39463
Tssr39464 4 133189136 to 133189160 24 + TSS region transcription start site region 39464
Tssr39465 4 133192088 to 133192117 29 + TSS region transcription start site region 39465
Tssr39466 4 133192187 to 133192209 22 + TSS region transcription start site region 39466
Tssr39467 4 133194500 to 133194540 40 + TSS region transcription start site region 39467
Tssr43742 4 133194514 to 133194528 14 - TSS region transcription start site region 43742
Mir7017 4 133195655 to 133195716 61 + miRNA gene microRNA 7017
Cpgi14990 4 133200397 to 133200603 206 CpG island CpG island 14990
Gpr3 4 133209340 to 133212536 3196 - protein coding gene G-protein coupled receptor 3
Cpgi14991 4 133210518 to 133210920 402 CpG island CpG island 14991
Cpgi14992 4 133211997 to 133213342 1345 CpG island CpG island 14992
Tssr43743 4 133212480 to 133212501 21 - TSS region transcription start site region 43743
Cpgi14993 4 133220768 to 133221071 303 CpG island CpG island 14993
Cd164l2 4 133220809 to 133224554 3745 + protein coding gene CD164 sialomucin-like 2
Tssr39468 4 133220858 to 133220906 48 + TSS region transcription start site region 39468
Tssr39469 4 133220911 to 133220927 16 + TSS region transcription start site region 39469
Tssr39470 4 133226543 to 133226546 3 + TSS region transcription start site region 39470
Fcnc-ps 4 133231545 to 133239286 7741 + pseudogene ficolin C pseudogene
Cpgi14994 4 133240549 to 133241877 1328 CpG island CpG island 14994
Tssr39471 4 133240778 to 133240827 49 + TSS region transcription start site region 39471
Map3k6 4 133240818 to 133252929 12111 + protein coding gene mitogen-activated protein kinase kinase kinase 6
Tssr43744 4 133241385 to 133241446 61 - TSS region transcription start site region 43744
Cpgi14995 4 133250628 to 133251650 1022 CpG island CpG island 14995
Tssr39472 4 133251353 to 133251388 35 + TSS region transcription start site region 39472
Tssr39473 4 133251410 to 133251421 11 + TSS region transcription start site region 39473
Tssr39474 4 133251523 to 133251548 25 + TSS region transcription start site region 39474
Sytl1 4 133253090 to 133263087 9997 - protein coding gene synaptotagmin-like 1
Cpgi14996 4 133256790 to 133257121 331 CpG island CpG island 14996
Tssr43745 4 133263042 to 133263135 93 - TSS region transcription start site region 43745
Tmem222 4 133266045 to 133277790 11745 - protein coding gene transmembrane protein 222
Cpgi14997 4 133277031 to 133278110 1079 CpG island CpG island 14997
Tssr43746 4 133277593 to 133277674 81 - TSS region transcription start site region 43746
Tssr43747 4 133277683 to 133277712 29 - TSS region transcription start site region 43747
Tssr43748 4 133277730 to 133277804 74 - TSS region transcription start site region 43748
Gm13259 4 133280857 to 133281312 455 - pseudogene predicted gene 13259
Gm3627 4 133292207 to 133294212 2005 protein coding gene predicted gene 3627
Wdtc1 4 133292466 to 133353467 61001 - protein coding gene WD and tetratricopeptide repeats 1
Cpgi14998 4 133338702 to 133339879 1177 CpG island CpG island 14998
Tssr43749 4 133339164 to 133339183 19 - TSS region transcription start site region 43749
Tssr43750 4 133339184 to 133339234 50 - TSS region transcription start site region 43750
Tssr43751 4 133339238 to 133339263 25 - TSS region transcription start site region 43751
Tssr43752 4 133339283 to 133339334 51 - TSS region transcription start site region 43752
Tssr43753 4 133352833 to 133352851 18 - TSS region transcription start site region 43753
Tssr43754 4 133352852 to 133352876 24 - TSS region transcription start site region 43754
Tssr43755 4 133352887 to 133352897 10 - TSS region transcription start site region 43755
Tssr43756 4 133353447 to 133353474 27 - TSS region transcription start site region 43756
Tssr43757 4 133353476 to 133353505 29 - TSS region transcription start site region 43757
Cpgi14999 4 133369629 to 133370122 493 CpG island CpG island 14999
Tssr39475 4 133369702 to 133369709 7 + TSS region transcription start site region 39475
Slc9a1 4 133369711 to 133423702 53991 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 1
Tssr39476 4 133369720 to 133369743 23 + TSS region transcription start site region 39476
Tssr39477 4 133369765 to 133369780 15 + TSS region transcription start site region 39477