Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132277394-132567468

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Taf12 4 132274355 to 132293329 18974 + protein coding gene TATA-box binding protein associated factor 12
Rab42 4 132302197 to 132303385 1188 - protein coding gene RAB42, member RAS oncogene family
Cpgi14956 4 132302928 to 132303395 467 CpG island CpG island 14956
Tssr43655 4 132303167 to 132303180 13 - TSS region transcription start site region 43655
Tssr43656 4 132303181 to 132303210 29 - TSS region transcription start site region 43656
Tssr43657 4 132303331 to 132303350 19 - TSS region transcription start site region 43657
Cpgi14957 4 132308544 to 132309105 561 CpG island CpG island 14957
Tssr39367 4 132308668 to 132308688 20 + TSS region transcription start site region 39367
Snhg12 4 132308678 to 132311024 2346 + lincRNA gene small nucleolar RNA host gene 12
Snora16a 4 132309465 to 132309600 135 + snoRNA gene small nucleolar RNA, H/ACA box 16A
Snora44 4 132309953 to 132310069 116 + snoRNA gene small nucleolar RNA, H/ACA box 44
Tssr39368 4 132310128 to 132310174 46 + TSS region transcription start site region 39368
Snora61 4 132310307 to 132310368 61 + snoRNA gene small nucleolar RNA, H/ACA box 61
Tssr39369 4 132310692 to 132310697 5 + TSS region transcription start site region 39369
Snord99 4 132310703 to 132310758 55 + snoRNA gene small nucleolar RNA, C/D box 99
Tssr39370 4 132311516 to 132311519 3 + TSS region transcription start site region 39370
Trnau1ap 4 132311763 to 132329538 17775 - protein coding gene tRNA selenocysteine 1 associated protein 1
Cpgi14958 4 132329084 to 132329842 758 CpG island CpG island 14958
Tssr43658 4 132329475 to 132329542 67 - TSS region transcription start site region 43658
Rcc1 4 132331919 to 132345750 13831 - protein coding gene regulator of chromosome condensation 1
Tssr43659 4 132332548 to 132332561 13 - TSS region transcription start site region 43659
Cpgi14959 4 132344844 to 132345884 1040 CpG island CpG island 14959
Tssr1321 4 132345663 to 132345673 10 - TSS region transcription start site region 1321
Tssr43660 4 132345686 to 132345708 22 - TSS region transcription start site region 43660
Tssr43661 4 132345715 to 132345718 3 - TSS region transcription start site region 43661
Tssr1322 4 132345737 to 132345742 5 - TSS region transcription start site region 1322
Tssr43662 4 132348129 to 132348135 6 - TSS region transcription start site region 43662
Tssr43663 4 132351637 to 132351646 9 - TSS region transcription start site region 43663
Tssr39371 4 132351768 to 132351777 9 + TSS region transcription start site region 39371
Gm17300 4 132351772 to 132353382 1610 + lincRNA gene predicted gene, 17300
Snhg3 4 132351933 to 132353686 1753 - lncRNA gene small nucleolar RNA host gene 3
Tssr43664 4 132352214 to 132352233 19 - TSS region transcription start site region 43664
Snora73b 4 132352322 to 132352526 204 - snoRNA gene small nucleolar RNA, H/ACA box 73b
Snora73a 4 132352775 to 132352979 204 - snoRNA gene small nucleolar RNA, H/ACA box 73a
Cpgi14960 4 132353263 to 132353827 564 CpG island CpG island 14960
Tssr43665 4 132353369 to 132353380 11 - TSS region transcription start site region 43665
Tssr43666 4 132353623 to 132353641 18 - TSS region transcription start site region 43666
Tssr43667 4 132353659 to 132353713 54 - TSS region transcription start site region 43667
Tssr43668 4 132353726 to 132353732 6 - TSS region transcription start site region 43668
Phactr4 4 132355922 to 132422446 66524 - protein coding gene phosphatase and actin regulator 4
Tssr43669 4 132356942 to 132356958 16 - TSS region transcription start site region 43669
Tssr43670 4 132397526 to 132397529 3 - TSS region transcription start site region 43670
Tssr43671 4 132398201 to 132398220 19 - TSS region transcription start site region 43671
Gm25707 4 132408309 to 132408404 95 + miRNA gene predicted gene, 25707
Cpgi14961 4 132421915 to 132422775 860 CpG island CpG island 14961
Tssr43672 4 132422378 to 132422390 12 - TSS region transcription start site region 43672
Tssr43673 4 132422394 to 132422468 74 - TSS region transcription start site region 43673
Tssr43674 4 132422469 to 132422480 11 - TSS region transcription start site region 43674
Tssr43675 4 132422484 to 132422497 13 - TSS region transcription start site region 43675
Tssr43676 4 132422560 to 132422575 15 - TSS region transcription start site region 43676
Cpgi14962 4 132433048 to 132433281 233 CpG island CpG island 14962
Gm23055 4 132442034 to 132442127 93 + snRNA gene predicted gene, 23055
Med18 4 132458731 to 132463921 5190 - protein coding gene mediator complex subunit 18
Cpgi14963 4 132463618 to 132464111 493 CpG island CpG island 14963
Tssr43677 4 132463873 to 132463929 56 - TSS region transcription start site region 43677
Sesn2 4 132492804 to 132510456 17652 - protein coding gene sestrin 2
Gm12981 4 132503561 to 132509649 6088 - antisense lncRNA gene predicted gene 12981
Cpgi14964 4 132509452 to 132510775 1323 CpG island CpG island 14964
Tssr43678 4 132510456 to 132510477 21 - TSS region transcription start site region 43678
Tssr43679 4 132510484 to 132510491 7 - TSS region transcription start site region 43679
Tssr43680 4 132510493 to 132510509 16 - TSS region transcription start site region 43680
Tssr43681 4 132515428 to 132515434 6 - TSS region transcription start site region 43681
Tssr39372 4 132515822 to 132515828 6 + TSS region transcription start site region 39372
n-TAagc8 4 132516008 to 132516079 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon AGC)
Atpif1 4 132530555 to 132533659 3104 - protein coding gene ATPase inhibitory factor 1
Tssr43682 4 132530702 to 132530757 55 - TSS region transcription start site region 43682
Tssr39373 4 132530739 to 132530754 15 + TSS region transcription start site region 39373
Tssr43683 4 132530784 to 132530828 44 - TSS region transcription start site region 43683
Tssr39374 4 132532674 to 132532701 27 + TSS region transcription start site region 39374
Gm12999 4 132532687 to 132533601 914 + antisense lncRNA gene predicted gene 12999
Tssr39375 4 132532709 to 132532724 15 + TSS region transcription start site region 39375
Cpgi14965 4 132532991 to 132533891 900 CpG island CpG island 14965
Tssr43684 4 132533174 to 132533196 22 - TSS region transcription start site region 43684
Tssr43685 4 132533359 to 132533395 36 - TSS region transcription start site region 43685
Tssr43686 4 132533569 to 132533652 83 - TSS region transcription start site region 43686
Tssr43687 4 132535407 to 132535456 49 - TSS region transcription start site region 43687
Cpgi14966 4 132535477 to 132536247 770 CpG island CpG island 14966
Tssr39376 4 132535542 to 132535585 43 + TSS region transcription start site region 39376
Dnajc8 4 132535559 to 132553742 18183 + protein coding gene DnaJ heat shock protein family (Hsp40) member C8
Tssr39377 4 132544656 to 132544676 20 + TSS region transcription start site region 39377
Tssr39378 4 132544702 to 132544714 12 + TSS region transcription start site region 39378
Gm24762 4 132547104 to 132547207 103 - snRNA gene predicted gene, 24762
Tssr39379 4 132553295 to 132553304 9 + TSS region transcription start site region 39379
Tssr39380 4 132553363 to 132553384 21 + TSS region transcription start site region 39380
Tssr39381 4 132563453 to 132563481 28 + TSS region transcription start site region 39381
Tssr39382 4 132563491 to 132563510 19 + TSS region transcription start site region 39382
Tssr39383 4 132563570 to 132563593 23 + TSS region transcription start site region 39383
Tssr39384 4 132563599 to 132563628 29 + TSS region transcription start site region 39384
Tssr39385 4 132563718 to 132563737 19 + TSS region transcription start site region 39385
Tssr39386 4 132564051 to 132564076 25 + TSS region transcription start site region 39386
Ptafr 4 132564067 to 132582683 18616 + protein coding gene platelet-activating factor receptor
Tssr39387 4 132564082 to 132564093 11 + TSS region transcription start site region 39387
Tssr39388 4 132564183 to 132564210 27 + TSS region transcription start site region 39388
Tssr39389 4 132565360 to 132565368 8 + TSS region transcription start site region 39389
Tssr43688 4 132567464 to 132567475 11 - TSS region transcription start site region 43688