Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132263201-132533220

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28874 4 132265708 to 132268841 3133 + lincRNA gene predicted gene 28874
Gm28872 4 132270056 to 132270213 157 + lincRNA gene predicted gene 28872
Rnu11 4 132270079 to 132270186 107 - snRNA gene U11 small nuclear RNA
Cpgi14954 4 132270094 to 132270537 443 CpG island CpG island 14954
Tssr43652 4 132270209 to 132270214 5 - TSS region transcription start site region 43652
Tssr43653 4 132273755 to 132273758 3 - TSS region transcription start site region 43653
Gt(pU21)115Imeg 4 132274095 to 132274281 186 unclassified gene gene trap 115, Institute of Molecular Embryology and Genetics
Cpgi14955 4 132274096 to 132274979 883 CpG island CpG island 14955
Tssr43654 4 132274277 to 132274327 50 - TSS region transcription start site region 43654
Taf12 4 132274355 to 132293329 18974 + protein coding gene TATA-box binding protein associated factor 12
Tssr39364 4 132274369 to 132274383 14 + TSS region transcription start site region 39364
Tssr39365 4 132274385 to 132274433 48 + TSS region transcription start site region 39365
Tssr39366 4 132274444 to 132274455 11 + TSS region transcription start site region 39366
Rab42 4 132302197 to 132303385 1188 - protein coding gene RAB42, member RAS oncogene family
Cpgi14956 4 132302928 to 132303395 467 CpG island CpG island 14956
Tssr43655 4 132303167 to 132303180 13 - TSS region transcription start site region 43655
Tssr43656 4 132303181 to 132303210 29 - TSS region transcription start site region 43656
Tssr43657 4 132303331 to 132303350 19 - TSS region transcription start site region 43657
Cpgi14957 4 132308544 to 132309105 561 CpG island CpG island 14957
Tssr39367 4 132308668 to 132308688 20 + TSS region transcription start site region 39367
Snhg12 4 132308678 to 132311024 2346 + lincRNA gene small nucleolar RNA host gene 12
Snora16a 4 132309465 to 132309600 135 + snoRNA gene small nucleolar RNA, H/ACA box 16A
Snora44 4 132309953 to 132310069 116 + snoRNA gene small nucleolar RNA, H/ACA box 44
Tssr39368 4 132310128 to 132310174 46 + TSS region transcription start site region 39368
Snora61 4 132310307 to 132310368 61 + snoRNA gene small nucleolar RNA, H/ACA box 61
Tssr39369 4 132310692 to 132310697 5 + TSS region transcription start site region 39369
Snord99 4 132310703 to 132310758 55 + snoRNA gene small nucleolar RNA, C/D box 99
Tssr39370 4 132311516 to 132311519 3 + TSS region transcription start site region 39370
Trnau1ap 4 132311763 to 132329538 17775 - protein coding gene tRNA selenocysteine 1 associated protein 1
Cpgi14958 4 132329084 to 132329842 758 CpG island CpG island 14958
Tssr43658 4 132329475 to 132329542 67 - TSS region transcription start site region 43658
Rcc1 4 132331919 to 132345750 13831 - protein coding gene regulator of chromosome condensation 1
Tssr43659 4 132332548 to 132332561 13 - TSS region transcription start site region 43659
Cpgi14959 4 132344844 to 132345884 1040 CpG island CpG island 14959
Tssr1321 4 132345663 to 132345673 10 - TSS region transcription start site region 1321
Tssr43660 4 132345686 to 132345708 22 - TSS region transcription start site region 43660
Tssr43661 4 132345715 to 132345718 3 - TSS region transcription start site region 43661
Tssr1322 4 132345737 to 132345742 5 - TSS region transcription start site region 1322
Tssr43662 4 132348129 to 132348135 6 - TSS region transcription start site region 43662
Tssr43663 4 132351637 to 132351646 9 - TSS region transcription start site region 43663
Tssr39371 4 132351768 to 132351777 9 + TSS region transcription start site region 39371
Gm17300 4 132351772 to 132353382 1610 + lincRNA gene predicted gene, 17300
Snhg3 4 132351933 to 132353686 1753 - lncRNA gene small nucleolar RNA host gene 3
Tssr43664 4 132352214 to 132352233 19 - TSS region transcription start site region 43664
Snora73b 4 132352322 to 132352526 204 - snoRNA gene small nucleolar RNA, H/ACA box 73b
Snora73a 4 132352775 to 132352979 204 - snoRNA gene small nucleolar RNA, H/ACA box 73a
Cpgi14960 4 132353263 to 132353827 564 CpG island CpG island 14960
Tssr43665 4 132353369 to 132353380 11 - TSS region transcription start site region 43665
Tssr43666 4 132353623 to 132353641 18 - TSS region transcription start site region 43666
Tssr43667 4 132353659 to 132353713 54 - TSS region transcription start site region 43667
Tssr43668 4 132353726 to 132353732 6 - TSS region transcription start site region 43668
Phactr4 4 132355922 to 132422446 66524 - protein coding gene phosphatase and actin regulator 4
Tssr43669 4 132356942 to 132356958 16 - TSS region transcription start site region 43669
Tssr43670 4 132397526 to 132397529 3 - TSS region transcription start site region 43670
Tssr43671 4 132398201 to 132398220 19 - TSS region transcription start site region 43671
Gm25707 4 132408309 to 132408404 95 + miRNA gene predicted gene, 25707
Cpgi14961 4 132421915 to 132422775 860 CpG island CpG island 14961
Tssr43672 4 132422378 to 132422390 12 - TSS region transcription start site region 43672
Tssr43673 4 132422394 to 132422468 74 - TSS region transcription start site region 43673
Tssr43674 4 132422469 to 132422480 11 - TSS region transcription start site region 43674
Tssr43675 4 132422484 to 132422497 13 - TSS region transcription start site region 43675
Tssr43676 4 132422560 to 132422575 15 - TSS region transcription start site region 43676
Cpgi14962 4 132433048 to 132433281 233 CpG island CpG island 14962
Gm23055 4 132442034 to 132442127 93 + snRNA gene predicted gene, 23055
Med18 4 132458731 to 132463921 5190 - protein coding gene mediator complex subunit 18
Cpgi14963 4 132463618 to 132464111 493 CpG island CpG island 14963
Tssr43677 4 132463873 to 132463929 56 - TSS region transcription start site region 43677
Sesn2 4 132492804 to 132510456 17652 - protein coding gene sestrin 2
Gm12981 4 132503561 to 132509649 6088 - antisense lncRNA gene predicted gene 12981
Cpgi14964 4 132509452 to 132510775 1323 CpG island CpG island 14964
Tssr43678 4 132510456 to 132510477 21 - TSS region transcription start site region 43678
Tssr43679 4 132510484 to 132510491 7 - TSS region transcription start site region 43679
Tssr43680 4 132510493 to 132510509 16 - TSS region transcription start site region 43680
Tssr43681 4 132515428 to 132515434 6 - TSS region transcription start site region 43681
Tssr39372 4 132515822 to 132515828 6 + TSS region transcription start site region 39372
n-TAagc8 4 132516008 to 132516079 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon AGC)
Atpif1 4 132530555 to 132533659 3104 - protein coding gene ATPase inhibitory factor 1
Tssr43682 4 132530702 to 132530757 55 - TSS region transcription start site region 43682
Tssr39373 4 132530739 to 132530754 15 + TSS region transcription start site region 39373
Tssr43683 4 132530784 to 132530828 44 - TSS region transcription start site region 43683
Tssr39374 4 132532674 to 132532701 27 + TSS region transcription start site region 39374
Gm12999 4 132532687 to 132533601 914 + antisense lncRNA gene predicted gene 12999
Tssr39375 4 132532709 to 132532724 15 + TSS region transcription start site region 39375
Cpgi14965 4 132532991 to 132533891 900 CpG island CpG island 14965
Tssr43684 4 132533174 to 132533196 22 - TSS region transcription start site region 43684