Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:132076929-133593169

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428 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Gm10300 4 132074697 to 132076992 2295 + protein coding gene predicted gene 10300
Tssr43636 4 132078496 to 132078499 3 - TSS region transcription start site region 43636
Gm13214 4 132093891 to 132094298 407 + pseudogene predicted gene 13214
Gm37711 4 132104830 to 132109363 4533 - unclassified gene predicted gene, 37711
Oprd1 4 132110726 to 132144486 33760 - protein coding gene opioid receptor, delta 1
Cpgi14950 4 132113324 to 132114138 814 CpG island CpG island 14950
n-TAcgc3 4 132125259 to 132125330 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon CGC)
Cpgi14951 4 132143817 to 132144860 1043 CpG island CpG island 14951
Tssr43637 4 132144519 to 132144531 12 - TSS region transcription start site region 43637
Gm13215 4 132148413 to 132148884 471 - pseudogene predicted gene 13215
Tssr43638 4 132148917 to 132148931 14 - TSS region transcription start site region 43638
D4Mit250a 4 132178806 to 132178934 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250a
D4Mit250b 4 132178806 to 132179023 217 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250b
Tssr43639 4 132183330 to 132183336 6 - TSS region transcription start site region 43639
Tssr43640 4 132184387 to 132184391 4 - TSS region transcription start site region 43640
Ythdf2 4 132184916 to 132212256 27340 - protein coding gene YTH N6-methyladenosine RNA binding protein 2
Tssr43641 4 132186582 to 132186602 20 - TSS region transcription start site region 43641
Tssr43642 4 132192278 to 132192281 3 - TSS region transcription start site region 43642
Tssr43643 4 132206439 to 132206443 4 - TSS region transcription start site region 43643
Cpgi14952 4 132210986 to 132212662 1676 CpG island CpG island 14952
Tssr43644 4 132211999 to 132212010 11 - TSS region transcription start site region 43644
Tssr43645 4 132212041 to 132212059 18 - TSS region transcription start site region 43645
Tssr43646 4 132212060 to 132212130 70 - TSS region transcription start site region 43646
Tssr43647 4 132212141 to 132212153 12 - TSS region transcription start site region 43647
Tssr43648 4 132212255 to 132212262 7 - TSS region transcription start site region 43648
Gm22033 4 132218439 to 132218528 89 - miRNA gene predicted gene, 22033
Rps15a-ps4 4 132219988 to 132220489 501 - pseudogene ribosomal protein S15A, pseudogene 4
Tssr43649 4 132220467 to 132220471 4 - TSS region transcription start site region 43649
Gmeb1 4 132221025 to 132261549 40524 - protein coding gene glucocorticoid modulatory element binding protein 1
Gm13252 4 132244946 to 132245266 320 - pseudogene predicted gene 13252
Tssr39362 4 132260504 to 132260517 13 + TSS region transcription start site region 39362
Tssr39363 4 132260521 to 132260538 17 + TSS region transcription start site region 39363
Cpgi14953 4 132260736 to 132261842 1106 CpG island CpG island 14953
Tssr43650 4 132261526 to 132261572 46 - TSS region transcription start site region 43650
Tssr43651 4 132261596 to 132261622 26 - TSS region transcription start site region 43651
Gm28874 4 132265708 to 132268841 3133 + lincRNA gene predicted gene 28874
Gm28872 4 132270056 to 132270213 157 + lincRNA gene predicted gene 28872
Rnu11 4 132270079 to 132270186 107 - snRNA gene U11 small nuclear RNA
Cpgi14954 4 132270094 to 132270537 443 CpG island CpG island 14954
Tssr43652 4 132270209 to 132270214 5 - TSS region transcription start site region 43652
Tssr43653 4 132273755 to 132273758 3 - TSS region transcription start site region 43653
Gt(pU21)115Imeg 4 132274095 to 132274281 186 unclassified gene gene trap 115, Institute of Molecular Embryology and Genetics
Cpgi14955 4 132274096 to 132274979 883 CpG island CpG island 14955
Tssr43654 4 132274277 to 132274327 50 - TSS region transcription start site region 43654
Taf12 4 132274355 to 132293329 18974 + protein coding gene TATA-box binding protein associated factor 12
Tssr39364 4 132274369 to 132274383 14 + TSS region transcription start site region 39364
Tssr39365 4 132274385 to 132274433 48 + TSS region transcription start site region 39365
Tssr39366 4 132274444 to 132274455 11 + TSS region transcription start site region 39366
Rab42 4 132302197 to 132303385 1188 - protein coding gene RAB42, member RAS oncogene family
Cpgi14956 4 132302928 to 132303395 467 CpG island CpG island 14956
Tssr43655 4 132303167 to 132303180 13 - TSS region transcription start site region 43655
Tssr43656 4 132303181 to 132303210 29 - TSS region transcription start site region 43656
Tssr43657 4 132303331 to 132303350 19 - TSS region transcription start site region 43657
Cpgi14957 4 132308544 to 132309105 561 CpG island CpG island 14957
Tssr39367 4 132308668 to 132308688 20 + TSS region transcription start site region 39367
Snhg12 4 132308678 to 132311024 2346 + lincRNA gene small nucleolar RNA host gene 12
Snora16a 4 132309465 to 132309600 135 + snoRNA gene small nucleolar RNA, H/ACA box 16A
Snora44 4 132309953 to 132310069 116 + snoRNA gene small nucleolar RNA, H/ACA box 44
Tssr39368 4 132310128 to 132310174 46 + TSS region transcription start site region 39368
Snora61 4 132310307 to 132310368 61 + snoRNA gene small nucleolar RNA, H/ACA box 61
Tssr39369 4 132310692 to 132310697 5 + TSS region transcription start site region 39369
Snord99 4 132310703 to 132310758 55 + snoRNA gene small nucleolar RNA, C/D box 99
Tssr39370 4 132311516 to 132311519 3 + TSS region transcription start site region 39370
Trnau1ap 4 132311763 to 132329538 17775 - protein coding gene tRNA selenocysteine 1 associated protein 1
Cpgi14958 4 132329084 to 132329842 758 CpG island CpG island 14958
Tssr43658 4 132329475 to 132329542 67 - TSS region transcription start site region 43658
Rcc1 4 132331919 to 132345750 13831 - protein coding gene regulator of chromosome condensation 1
Tssr43659 4 132332548 to 132332561 13 - TSS region transcription start site region 43659
Cpgi14959 4 132344844 to 132345884 1040 CpG island CpG island 14959
Tssr1321 4 132345663 to 132345673 10 - TSS region transcription start site region 1321
Tssr43660 4 132345686 to 132345708 22 - TSS region transcription start site region 43660
Tssr43661 4 132345715 to 132345718 3 - TSS region transcription start site region 43661
Tssr1322 4 132345737 to 132345742 5 - TSS region transcription start site region 1322
Tssr43662 4 132348129 to 132348135 6 - TSS region transcription start site region 43662
Tssr43663 4 132351637 to 132351646 9 - TSS region transcription start site region 43663
Tssr39371 4 132351768 to 132351777 9 + TSS region transcription start site region 39371
Gm17300 4 132351772 to 132353382 1610 + lincRNA gene predicted gene, 17300
Snhg3 4 132351933 to 132353686 1753 - lncRNA gene small nucleolar RNA host gene 3
Tssr43664 4 132352214 to 132352233 19 - TSS region transcription start site region 43664
Snora73b 4 132352322 to 132352526 204 - snoRNA gene small nucleolar RNA, H/ACA box 73b
Snora73a 4 132352775 to 132352979 204 - snoRNA gene small nucleolar RNA, H/ACA box 73a
Cpgi14960 4 132353263 to 132353827 564 CpG island CpG island 14960
Tssr43665 4 132353369 to 132353380 11 - TSS region transcription start site region 43665
Tssr43666 4 132353623 to 132353641 18 - TSS region transcription start site region 43666
Tssr43667 4 132353659 to 132353713 54 - TSS region transcription start site region 43667
Tssr43668 4 132353726 to 132353732 6 - TSS region transcription start site region 43668
Phactr4 4 132355922 to 132422446 66524 - protein coding gene phosphatase and actin regulator 4
Tssr43669 4 132356942 to 132356958 16 - TSS region transcription start site region 43669
Tssr43670 4 132397526 to 132397529 3 - TSS region transcription start site region 43670
Tssr43671 4 132398201 to 132398220 19 - TSS region transcription start site region 43671
Gm25707 4 132408309 to 132408404 95 + miRNA gene predicted gene, 25707
Cpgi14961 4 132421915 to 132422775 860 CpG island CpG island 14961
Tssr43672 4 132422378 to 132422390 12 - TSS region transcription start site region 43672
Tssr43673 4 132422394 to 132422468 74 - TSS region transcription start site region 43673
Tssr43674 4 132422469 to 132422480 11 - TSS region transcription start site region 43674
Tssr43675 4 132422484 to 132422497 13 - TSS region transcription start site region 43675
Tssr43676 4 132422560 to 132422575 15 - TSS region transcription start site region 43676
Cpgi14962 4 132433048 to 132433281 233 CpG island CpG island 14962
Gm23055 4 132442034 to 132442127 93 + snRNA gene predicted gene, 23055
Med18 4 132458731 to 132463921 5190 - protein coding gene mediator complex subunit 18
Cpgi14963 4 132463618 to 132464111 493 CpG island CpG island 14963
Tssr43677 4 132463873 to 132463929 56 - TSS region transcription start site region 43677
Sesn2 4 132492804 to 132510456 17652 - protein coding gene sestrin 2
Gm12981 4 132503561 to 132509649 6088 - antisense lncRNA gene predicted gene 12981
Cpgi14964 4 132509452 to 132510775 1323 CpG island CpG island 14964
Tssr43678 4 132510456 to 132510477 21 - TSS region transcription start site region 43678
Tssr43679 4 132510484 to 132510491 7 - TSS region transcription start site region 43679
Tssr43680 4 132510493 to 132510509 16 - TSS region transcription start site region 43680
Tssr43681 4 132515428 to 132515434 6 - TSS region transcription start site region 43681
Tssr39372 4 132515822 to 132515828 6 + TSS region transcription start site region 39372
n-TAagc8 4 132516008 to 132516079 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon AGC)
Atpif1 4 132530555 to 132533659 3104 - protein coding gene ATPase inhibitory factor 1
Tssr43682 4 132530702 to 132530757 55 - TSS region transcription start site region 43682
Tssr39373 4 132530739 to 132530754 15 + TSS region transcription start site region 39373
Tssr43683 4 132530784 to 132530828 44 - TSS region transcription start site region 43683
Tssr39374 4 132532674 to 132532701 27 + TSS region transcription start site region 39374
Gm12999 4 132532687 to 132533601 914 + antisense lncRNA gene predicted gene 12999
Tssr39375 4 132532709 to 132532724 15 + TSS region transcription start site region 39375
Cpgi14965 4 132532991 to 132533891 900 CpG island CpG island 14965
Tssr43684 4 132533174 to 132533196 22 - TSS region transcription start site region 43684
Tssr43685 4 132533359 to 132533395 36 - TSS region transcription start site region 43685
Tssr43686 4 132533569 to 132533652 83 - TSS region transcription start site region 43686
Tssr43687 4 132535407 to 132535456 49 - TSS region transcription start site region 43687
Cpgi14966 4 132535477 to 132536247 770 CpG island CpG island 14966
Tssr39376 4 132535542 to 132535585 43 + TSS region transcription start site region 39376
Dnajc8 4 132535559 to 132553742 18183 + protein coding gene DnaJ heat shock protein family (Hsp40) member C8
Tssr39377 4 132544656 to 132544676 20 + TSS region transcription start site region 39377
Tssr39378 4 132544702 to 132544714 12 + TSS region transcription start site region 39378
Gm24762 4 132547104 to 132547207 103 - snRNA gene predicted gene, 24762
Tssr39379 4 132553295 to 132553304 9 + TSS region transcription start site region 39379
Tssr39380 4 132553363 to 132553384 21 + TSS region transcription start site region 39380
Tssr39381 4 132563453 to 132563481 28 + TSS region transcription start site region 39381
Tssr39382 4 132563491 to 132563510 19 + TSS region transcription start site region 39382
Tssr39383 4 132563570 to 132563593 23 + TSS region transcription start site region 39383
Tssr39384 4 132563599 to 132563628 29 + TSS region transcription start site region 39384
Tssr39385 4 132563718 to 132563737 19 + TSS region transcription start site region 39385
Tssr39386 4 132564051 to 132564076 25 + TSS region transcription start site region 39386
Ptafr 4 132564067 to 132582683 18616 + protein coding gene platelet-activating factor receptor
Tssr39387 4 132564082 to 132564093 11 + TSS region transcription start site region 39387
Tssr39388 4 132564183 to 132564210 27 + TSS region transcription start site region 39388
Tssr39389 4 132565360 to 132565368 8 + TSS region transcription start site region 39389
Tssr43688 4 132567464 to 132567475 11 - TSS region transcription start site region 43688
Tssr43689 4 132567491 to 132567502 11 - TSS region transcription start site region 43689
Tssr39390 4 132568322 to 132568367 45 + TSS region transcription start site region 39390
Tssr39391 4 132568409 to 132568433 24 + TSS region transcription start site region 39391
Tssr39392 4 132568497 to 132568508 11 + TSS region transcription start site region 39392
Tssr39393 4 132568578 to 132568593 15 + TSS region transcription start site region 39393
Tssr39394 4 132568605 to 132568656 51 + TSS region transcription start site region 39394
Tssr39395 4 132568660 to 132568694 34 + TSS region transcription start site region 39395
Tssr39396 4 132568813 to 132568824 11 + TSS region transcription start site region 39396
Tssr39397 4 132579410 to 132579427 17 + TSS region transcription start site region 39397
Tssr39398 4 132579536 to 132579563 27 + TSS region transcription start site region 39398
Cpgi14967 4 132579804 to 132580080 276 CpG island CpG island 14967
Tssr39399 4 132580657 to 132580677 20 + TSS region transcription start site region 39399
Tssr39400 4 132581118 to 132581129 11 + TSS region transcription start site region 39400
Tssr39401 4 132581144 to 132581165 21 + TSS region transcription start site region 39401
Tssr39402 4 132581184 to 132581204 20 + TSS region transcription start site region 39402
Tssr39403 4 132581483 to 132581511 28 + TSS region transcription start site region 39403
Tssr39404 4 132588786 to 132588794 8 + TSS region transcription start site region 39404
Tssr43690 4 132608297 to 132608313 16 - TSS region transcription start site region 43690
Tssr39405 4 132608517 to 132608531 14 + TSS region transcription start site region 39405
Tssr39406 4 132608543 to 132608561 18 + TSS region transcription start site region 39406
Tssr39407 4 132611161 to 132611166 5 + TSS region transcription start site region 39407
Tssr43691 4 132611391 to 132611408 17 - TSS region transcription start site region 43691
Tssr39408 4 132611588 to 132611608 20 + TSS region transcription start site region 39408
Tssr39409 4 132611618 to 132611636 18 + TSS region transcription start site region 39409
Tssr43692 4 132617889 to 132617938 49 - TSS region transcription start site region 43692
Tssr39410 4 132620004 to 132620045 41 + TSS region transcription start site region 39410
Tssr39411 4 132624323 to 132624330 7 + TSS region transcription start site region 39411
Cpgi14968 4 132638718 to 132639718 1000 CpG island CpG island 14968
Tssr43693 4 132638885 to 132638904 19 - TSS region transcription start site region 43693
Eya3 4 132639014 to 132724765 85751 + protein coding gene EYA transcriptional coactivator and phosphatase 3
Tssr39412 4 132639028 to 132639118 90 + TSS region transcription start site region 39412
Tssr39413 4 132656683 to 132656705 22 + TSS region transcription start site region 39413
Tssr39414 4 132690656 to 132690664 8 + TSS region transcription start site region 39414
Tssr39415 4 132709938 to 132709969 31 + TSS region transcription start site region 39415
Tssr39416 4 132716252 to 132716254 2 + TSS region transcription start site region 39416
Xkr8 4 132724897 to 132732546 7649 - protein coding gene X-linked Kx blood group related 8
Tssr43694 4 132727627 to 132727640 13 - TSS region transcription start site region 43694
Tssr43695 4 132731710 to 132731721 11 - TSS region transcription start site region 43695
Tssr39417 4 132731826 to 132731843 17 + TSS region transcription start site region 39417
Cpgi14969 4 132732201 to 132732633 432 CpG island CpG island 14969
Tssr43696 4 132732427 to 132732438 11 - TSS region transcription start site region 43696
Tssr43697 4 132732514 to 132732558 44 - TSS region transcription start site region 43697
Tssr43698 4 132732565 to 132732586 21 - TSS region transcription start site region 43698
Smpdl3b 4 132732966 to 132757171 24205 - protein coding gene sphingomyelin phosphodiesterase, acid-like 3B
Cpgi14970 4 132733457 to 132733786 329 CpG island CpG island 14970
Tssr43699 4 132734825 to 132734836 11 - TSS region transcription start site region 43699
Tssr43700 4 132734837 to 132734856 19 - TSS region transcription start site region 43700
Tssr39418 4 132737625 to 132737629 4 + TSS region transcription start site region 39418
Tssr43701 4 132747254 to 132747257 3 - TSS region transcription start site region 43701
Cpgi14971 4 132756903 to 132757331 428 CpG island CpG island 14971
Tssr43702 4 132757104 to 132757107 3 - TSS region transcription start site region 43702
Tssr43703 4 132757107 to 132757152 45 - TSS region transcription start site region 43703
Tssr43704 4 132757162 to 132757187 25 - TSS region transcription start site region 43704
Tssr43705 4 132757229 to 132757240 11 - TSS region transcription start site region 43705
Tssr43706 4 132757248 to 132757259 11 - TSS region transcription start site region 43706
Cpgi14972 4 132768007 to 132768976 969 CpG island CpG island 14972
Tssr39419 4 132768325 to 132768390 65 + TSS region transcription start site region 39419