Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 4:131873413-132125321

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57 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14944 4 131873159 to 131874542 1383 CpG island CpG island 14944
Tssr43615 4 131873417 to 131873445 28 - TSS region transcription start site region 43615
Tssr39352 4 131873518 to 131873535 17 + TSS region transcription start site region 39352
Tssr39353 4 131873608 to 131873679 71 + TSS region transcription start site region 39353
Srsf4 4 131873617 to 131901706 28089 + protein coding gene serine and arginine-rich splicing factor 4
Tssr39354 4 131873684 to 131873698 14 + TSS region transcription start site region 39354
Tssr39355 4 131873702 to 131873722 20 + TSS region transcription start site region 39355
Tssr39356 4 131876063 to 131876092 29 + TSS region transcription start site region 39356
A930004J17Rik 4 131878628 to 131883237 4609 + lncRNA gene RIKEN cDNA A930004J17 gene
4733401A01Rik 4 131887903 to 131889417 1514 + lncRNA gene RIKEN cDNA 4733401A01 gene
Gm12992 4 131899478 to 131920029 20551 - lncRNA gene predicted gene 12992
Gm12978 4 131902790 to 131903311 521 - pseudogene predicted gene 12978
Cpgi14945 4 131915059 to 131915505 446 CpG island CpG island 14945
Cpgi14946 4 131916191 to 131916763 572 CpG island CpG island 14946
Cpgi14947 4 131919711 to 131922939 3228 CpG island CpG island 14947
Tssr39357 4 131920568 to 131920600 32 + TSS region transcription start site region 39357
Tssr43616 4 131920702 to 131920707 5 - TSS region transcription start site region 43616
Gm50475 4 131920816 to 131921528 712 - lncRNA gene predicted gene, 50475
Tssr43617 4 131921019 to 131921022 3 - TSS region transcription start site region 43617
Tssr39358 4 131921150 to 131921160 10 + TSS region transcription start site region 39358
Tssr39359 4 131921198 to 131921207 9 + TSS region transcription start site region 39359
Tmem200b 4 131921200 to 131923140 1940 + protein coding gene transmembrane protein 200B
Tssr1320 4 131921690 to 131921694 4 + TSS region transcription start site region 1320
Nba1 4 131923413 to 141151964 9228551 QTL New Zealand Black autoimmunity 1
Epb41 4 131923413 to 132075321 151908 - protein coding gene erythrocyte membrane protein band 4.1
Tssr39360 4 131923427 to 131923431 4 + TSS region transcription start site region 39360
Tssr43618 4 131929758 to 131929784 26 - TSS region transcription start site region 43618
Tssr43619 4 131937165 to 131937183 18 - TSS region transcription start site region 43619
Tssr43620 4 131960334 to 131960338 4 - TSS region transcription start site region 43620
Tssr43621 4 131967824 to 131967838 14 - TSS region transcription start site region 43621
Tssr43622 4 131982726 to 131982730 4 - TSS region transcription start site region 43622
Tssr43623 4 131990820 to 131990830 10 - TSS region transcription start site region 43623
Gm27445 4 131992218 to 131992289 71 - miRNA gene predicted gene, 27445
Tssr43624 4 132014306 to 132014309 3 - TSS region transcription start site region 43624
Tssr43625 4 132016144 to 132016146 2 - TSS region transcription start site region 43625
Tssr43626 4 132029970 to 132029975 5 - TSS region transcription start site region 43626
Cpgi14948 4 132048018 to 132049476 1458 CpG island CpG island 14948
Gm13063 4 132048178 to 132048961 783 + lncRNA gene predicted gene 13063
Tssr43627 4 132048960 to 132048972 12 - TSS region transcription start site region 43627
Tssr43628 4 132048988 to 132049012 24 - TSS region transcription start site region 43628
Tssr43629 4 132049028 to 132049044 16 - TSS region transcription start site region 43629
Tssr43630 4 132049058 to 132049156 98 - TSS region transcription start site region 43630
Gm36157 4 132049534 to 132053437 3903 + lncRNA gene predicted gene, 36157
Tssr43631 4 132053459 to 132053465 6 - TSS region transcription start site region 43631
Tssr43632 4 132059160 to 132059171 11 - TSS region transcription start site region 43632
Cpgi14949 4 132074390 to 132075564 1174 CpG island CpG island 14949
Gm10300 4 132074697 to 132076992 2295 + lncRNA gene predicted gene 10300
Tssr43633 4 132075250 to 132075291 41 - TSS region transcription start site region 43633
Tssr43634 4 132075299 to 132075338 39 - TSS region transcription start site region 43634
Tssr43635 4 132075417 to 132075430 13 - TSS region transcription start site region 43635
Tssr39361 4 132075604 to 132075609 5 + TSS region transcription start site region 39361
Tssr43636 4 132078496 to 132078499 3 - TSS region transcription start site region 43636
Gm13214 4 132093891 to 132094298 407 + pseudogene predicted gene 13214
Gm37711 4 132104830 to 132109363 4533 - unclassified gene predicted gene, 37711
Oprd1 4 132110726 to 132144486 33760 - protein coding gene opioid receptor, delta 1
Cpgi14950 4 132113324 to 132114138 814 CpG island CpG island 14950
n-TAcgc3 4 132125259 to 132125330 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon CGC)