Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130944139-131893303

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr39350 4 130944377 to 130944391 14 + TSS region transcription start site region 39350
Matn1 4 130944385 to 130955475 11090 + protein coding gene matrilin 1, cartilage matrix protein
Cpgi14937 4 130949823 to 130950221 398 CpG island CpG island 14937
Gm12973 4 130974742 to 131001225 26483 + lincRNA gene predicted gene 12973
A930031H19Rik 4 131000832 to 131010474 9642 - lincRNA gene RIKEN cDNA A930031H19 gene
Tssr1316 4 131046574 to 131046576 2 + TSS region transcription start site region 1316
Gm42317 4 131063855 to 131065645 1790 - lncRNA gene predicted gene, 42317
Gm35482 4 131075667 to 131080271 4604 - lncRNA gene predicted gene, 35482
Gm42318 4 131156346 to 131162675 6329 + lncRNA gene predicted gene, 42318
Gm25261 4 131239277 to 131239410 133 + snoRNA gene predicted gene, 25261
Cpgi14938 4 131253016 to 131253188 172 CpG island CpG island 14938
Cpgi14939 4 131356441 to 131356608 167 CpG island CpG island 14939
Tssr1317 4 131389980 to 131389995 15 + TSS region transcription start site region 1317
Gm35634 4 131409139 to 131428303 19164 + lncRNA gene predicted gene, 35634
Gm46723 4 131456305 to 131482614 26309 + lncRNA gene predicted gene, 46723
Gm35779 4 131458415 to 131485455 27040 - lncRNA gene predicted gene, 35779
Gm831 4 131491310 to 131503058 11748 + lincRNA gene predicted gene 831
Tssr1318 4 131572921 to 131572924 3 + TSS region transcription start site region 1318
Gm42320 4 131617437 to 131635082 17645 + lncRNA gene predicted gene, 42320
Gm12962 4 131647048 to 131677845 30797 - lincRNA gene predicted gene 12962
Gm42321 4 131647059 to 131710512 63453 - lncRNA gene predicted gene, 42321
Tssr43609 4 131672133 to 131672146 13 - TSS region transcription start site region 43609
Gm16080 4 131694607 to 131710508 15901 - lincRNA gene predicted gene 16080
Ptpru 4 131768457 to 131838288 69831 - protein coding gene protein tyrosine phosphatase, receptor type, U
Tssr43610 4 131807939 to 131807943 4 - TSS region transcription start site region 43610
Cpgi14940 4 131818766 to 131819131 365 CpG island CpG island 14940
Cpgi14941 4 131819396 to 131819714 318 CpG island CpG island 14941
Tssr43611 4 131821631 to 131821663 32 - TSS region transcription start site region 43611
Cpgi14942 4 131836338 to 131838704 2366 CpG island CpG island 14942
Tssr43612 4 131838237 to 131838291 54 - TSS region transcription start site region 43612
Tssr43613 4 131838294 to 131838305 11 - TSS region transcription start site region 43613
Cpgi14943 4 131843148 to 131843956 808 CpG island CpG island 14943
Tssr39351 4 131843459 to 131843503 44 + TSS region transcription start site region 39351
Mecr 4 131843470 to 131867786 24316 + protein coding gene mitochondrial trans-2-enoyl-CoA reductase
Tssr1319 4 131844508 to 131844509 1 - TSS region transcription start site region 1319
Cpgi14944 4 131873159 to 131874542 1383 CpG island CpG island 14944
Tssr43614 4 131873367 to 131873405 38 - TSS region transcription start site region 43614
Tssr43615 4 131873417 to 131873445 28 - TSS region transcription start site region 43615
Tssr39352 4 131873518 to 131873535 17 + TSS region transcription start site region 39352
Tssr39353 4 131873608 to 131873679 71 + TSS region transcription start site region 39353
Srsf4 4 131873617 to 131901706 28089 + protein coding gene serine/arginine-rich splicing factor 4
Tssr39354 4 131873684 to 131873698 14 + TSS region transcription start site region 39354
Tssr39355 4 131873702 to 131873722 20 + TSS region transcription start site region 39355
Tssr39356 4 131876063 to 131876092 29 + TSS region transcription start site region 39356
A930004J17Rik 4 131878628 to 131883237 4609 + unclassified gene RIKEN cDNA A930004J17 gene
4733401A01Rik 4 131887902 to 131889416 1514 unclassified gene RIKEN cDNA 4733401A01 gene