Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130824508-132864509

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388 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdc3 4 130792537 to 130826318 33781 + protein coding gene syndecan 3
Gm26716 4 130824394 to 130826313 1919 - antisense lncRNA gene predicted gene, 26716
Tssr39293 4 130825866 to 130825878 12 + TSS region transcription start site region 39293
Tssr39294 4 130826021 to 130826038 17 + TSS region transcription start site region 39294
Tssr39295 4 130826187 to 130826203 16 + TSS region transcription start site region 39295
Tssr39296 4 130826213 to 130826231 18 + TSS region transcription start site region 39296
Gm42316 4 130827769 to 130834247 6478 - lncRNA gene predicted gene, 42316
Tssr43602 4 130839947 to 130839960 13 - TSS region transcription start site region 43602
Gm22660 4 130857751 to 130857880 129 - snoRNA gene predicted gene, 22660
Cpgi14936 4 130861583 to 130862102 519 CpG island CpG island 14936
Gm35294 4 130871050 to 130872898 1848 + lncRNA gene predicted gene, 35294
Tssr39297 4 130884916 to 130884964 48 + TSS region transcription start site region 39297
Tssr39298 4 130905235 to 130905270 35 + TSS region transcription start site region 39298
Gm38599 4 130906051 to 130914563 8512 - lncRNA gene predicted gene, 38599
Tssr39299 4 130913120 to 130913137 17 + TSS region transcription start site region 39299
Laptm5 4 130913125 to 130936141 23016 + protein coding gene lysosomal-associated protein transmembrane 5
Tssr39300 4 130913179 to 130913194 15 + TSS region transcription start site region 39300
Tssr39301 4 130913217 to 130913226 9 + TSS region transcription start site region 39301
Tssr39302 4 130913264 to 130913348 84 + TSS region transcription start site region 39302
Tssr39303 4 130913365 to 130913370 5 + TSS region transcription start site region 39303
Tssr1314 4 130914087 to 130914108 21 - TSS region transcription start site region 1314
Tssr43603 4 130914128 to 130914144 16 - TSS region transcription start site region 43603
Tssr39304 4 130914349 to 130914353 4 + TSS region transcription start site region 39304
Tssr39305 4 130916012 to 130916019 7 + TSS region transcription start site region 39305
Tssr39306 4 130926104 to 130926160 56 + TSS region transcription start site region 39306
Tssr39307 4 130926765 to 130926779 14 + TSS region transcription start site region 39307
Tssr39308 4 130928637 to 130928656 19 + TSS region transcription start site region 39308
Tssr39309 4 130928677 to 130928688 11 + TSS region transcription start site region 39309
Tssr39310 4 130928697 to 130928702 5 + TSS region transcription start site region 39310
Tssr39311 4 130928711 to 130928719 8 + TSS region transcription start site region 39311
Tssr39312 4 130929408 to 130929485 77 + TSS region transcription start site region 39312
Tssr39313 4 130929497 to 130929514 17 + TSS region transcription start site region 39313
Tssr43604 4 130929499 to 130929532 33 - TSS region transcription start site region 43604
Tssr39314 4 130930762 to 130930780 18 + TSS region transcription start site region 39314
Tssr39315 4 130930784 to 130930802 18 + TSS region transcription start site region 39315
Tssr39316 4 130930836 to 130930847 11 + TSS region transcription start site region 39316
Tssr39317 4 130932012 to 130932025 13 + TSS region transcription start site region 39317
Tssr1315 4 130932125 to 130932132 7 + TSS region transcription start site region 1315
Tssr39318 4 130932133 to 130932144 11 + TSS region transcription start site region 39318
Tssr39319 4 130932161 to 130932177 16 + TSS region transcription start site region 39319
Tssr39320 4 130932232 to 130932239 7 + TSS region transcription start site region 39320
Tssr39321 4 130932248 to 130932258 10 + TSS region transcription start site region 39321
Tssr39322 4 130932300 to 130932311 11 + TSS region transcription start site region 39322
Tssr39323 4 130932313 to 130932325 12 + TSS region transcription start site region 39323
Tssr39324 4 130932349 to 130932356 7 + TSS region transcription start site region 39324
Tssr39325 4 130932359 to 130932370 11 + TSS region transcription start site region 39325
Tssr39326 4 130932374 to 130932391 17 + TSS region transcription start site region 39326
Tssr39327 4 130932395 to 130932410 15 + TSS region transcription start site region 39327
Tssr39328 4 130932418 to 130932436 18 + TSS region transcription start site region 39328
Tssr39329 4 130932458 to 130932555 97 + TSS region transcription start site region 39329
Tssr39330 4 130932556 to 130932612 56 + TSS region transcription start site region 39330
Tssr39331 4 130932617 to 130932644 27 + TSS region transcription start site region 39331
Tssr39332 4 130934457 to 130934468 11 + TSS region transcription start site region 39332
Tssr39333 4 130934480 to 130934483 3 + TSS region transcription start site region 39333
Tssr39334 4 130934508 to 130934532 24 + TSS region transcription start site region 39334
Tssr43605 4 130934543 to 130934573 30 - TSS region transcription start site region 43605
Tssr39335 4 130934545 to 130934550 5 + TSS region transcription start site region 39335
Tssr39336 4 130934559 to 130934566 7 + TSS region transcription start site region 39336
Tssr39337 4 130934581 to 130934593 12 + TSS region transcription start site region 39337
Tssr39338 4 130934615 to 130934626 11 + TSS region transcription start site region 39338
Tssr39339 4 130934639 to 130934673 34 + TSS region transcription start site region 39339
Tssr39340 4 130934716 to 130934721 5 + TSS region transcription start site region 39340
Tssr39341 4 130934732 to 130934739 7 + TSS region transcription start site region 39341
Tssr43606 4 130934788 to 130934832 44 - TSS region transcription start site region 43606
Tssr39342 4 130934814 to 130934825 11 + TSS region transcription start site region 39342
Tssr39343 4 130934834 to 130934846 12 + TSS region transcription start site region 39343
Tssr39344 4 130934894 to 130934907 13 + TSS region transcription start site region 39344
Tssr39345 4 130934930 to 130934944 14 + TSS region transcription start site region 39345
Tssr39346 4 130934946 to 130934959 13 + TSS region transcription start site region 39346
Tssr43607 4 130935072 to 130935114 42 - TSS region transcription start site region 43607
Tssr39347 4 130935492 to 130935513 21 + TSS region transcription start site region 39347
Tssr39348 4 130936003 to 130936031 28 + TSS region transcription start site region 39348
Tssr39349 4 130936048 to 130936069 21 + TSS region transcription start site region 39349
Tssr43608 4 130936136 to 130936139 3 - TSS region transcription start site region 43608
Tssr39350 4 130944377 to 130944391 14 + TSS region transcription start site region 39350
Matn1 4 130944385 to 130955475 11090 + protein coding gene matrilin 1, cartilage matrix protein
Cpgi14937 4 130949823 to 130950221 398 CpG island CpG island 14937
Gm12973 4 130974742 to 131001225 26483 + lincRNA gene predicted gene 12973
A930031H19Rik 4 131000832 to 131010474 9642 - lincRNA gene RIKEN cDNA A930031H19 gene
Tssr1316 4 131046574 to 131046576 2 + TSS region transcription start site region 1316
Gm42317 4 131063855 to 131065645 1790 - lncRNA gene predicted gene, 42317
Gm35482 4 131075667 to 131080271 4604 - lncRNA gene predicted gene, 35482
Gm42318 4 131156346 to 131162675 6329 + lncRNA gene predicted gene, 42318
Gm25261 4 131239277 to 131239410 133 + snoRNA gene predicted gene, 25261
Cpgi14938 4 131253016 to 131253188 172 CpG island CpG island 14938
Cpgi14939 4 131356441 to 131356608 167 CpG island CpG island 14939
Tssr1317 4 131389980 to 131389995 15 + TSS region transcription start site region 1317
Gm35634 4 131409139 to 131428303 19164 + lncRNA gene predicted gene, 35634
Gm46723 4 131456305 to 131482614 26309 + lncRNA gene predicted gene, 46723
Gm35779 4 131458415 to 131485455 27040 - lncRNA gene predicted gene, 35779
Gm831 4 131491310 to 131503058 11748 + lincRNA gene predicted gene 831
Tssr1318 4 131572921 to 131572924 3 + TSS region transcription start site region 1318
Gm42320 4 131617437 to 131635082 17645 + lncRNA gene predicted gene, 42320
Gm12962 4 131647048 to 131677845 30797 - lincRNA gene predicted gene 12962
Gm42321 4 131647059 to 131710512 63453 - lncRNA gene predicted gene, 42321
Tssr43609 4 131672133 to 131672146 13 - TSS region transcription start site region 43609
Gm16080 4 131694607 to 131710508 15901 - lincRNA gene predicted gene 16080
Ptpru 4 131768457 to 131838288 69831 - protein coding gene protein tyrosine phosphatase, receptor type, U
Tssr43610 4 131807939 to 131807943 4 - TSS region transcription start site region 43610
Cpgi14940 4 131818766 to 131819131 365 CpG island CpG island 14940
Cpgi14941 4 131819396 to 131819714 318 CpG island CpG island 14941
Tssr43611 4 131821631 to 131821663 32 - TSS region transcription start site region 43611
Cpgi14942 4 131836338 to 131838704 2366 CpG island CpG island 14942
Tssr43612 4 131838237 to 131838291 54 - TSS region transcription start site region 43612
Tssr43613 4 131838294 to 131838305 11 - TSS region transcription start site region 43613
Cpgi14943 4 131843148 to 131843956 808 CpG island CpG island 14943
Tssr39351 4 131843459 to 131843503 44 + TSS region transcription start site region 39351
Mecr 4 131843470 to 131867786 24316 + protein coding gene mitochondrial trans-2-enoyl-CoA reductase
Tssr1319 4 131844508 to 131844509 1 - TSS region transcription start site region 1319
Cpgi14944 4 131873159 to 131874542 1383 CpG island CpG island 14944
Tssr43614 4 131873367 to 131873405 38 - TSS region transcription start site region 43614
Tssr43615 4 131873417 to 131873445 28 - TSS region transcription start site region 43615
Tssr39352 4 131873518 to 131873535 17 + TSS region transcription start site region 39352
Tssr39353 4 131873608 to 131873679 71 + TSS region transcription start site region 39353
Srsf4 4 131873617 to 131901706 28089 + protein coding gene serine/arginine-rich splicing factor 4
Tssr39354 4 131873684 to 131873698 14 + TSS region transcription start site region 39354
Tssr39355 4 131873702 to 131873722 20 + TSS region transcription start site region 39355
Tssr39356 4 131876063 to 131876092 29 + TSS region transcription start site region 39356
A930004J17Rik 4 131878628 to 131883237 4609 + unclassified gene RIKEN cDNA A930004J17 gene
4733401A01Rik 4 131887902 to 131889416 1514 unclassified gene RIKEN cDNA 4733401A01 gene
Gm12992 4 131899478 to 131920029 20551 - lncRNA gene predicted gene 12992
Gm12978 4 131902790 to 131903311 521 - pseudogene predicted gene 12978
Cpgi14945 4 131915059 to 131915505 446 CpG island CpG island 14945
Cpgi14946 4 131916191 to 131916763 572 CpG island CpG island 14946
Cpgi14947 4 131919711 to 131922939 3228 CpG island CpG island 14947
Tssr39357 4 131920568 to 131920600 32 + TSS region transcription start site region 39357
Tssr43616 4 131920702 to 131920707 5 - TSS region transcription start site region 43616
Tssr43617 4 131921019 to 131921022 3 - TSS region transcription start site region 43617
Tssr39358 4 131921150 to 131921160 10 + TSS region transcription start site region 39358
Tssr39359 4 131921198 to 131921207 9 + TSS region transcription start site region 39359
Tssr1320 4 131921690 to 131921694 4 + TSS region transcription start site region 1320
Tmem200b 4 131921771 to 131923140 1369 + protein coding gene transmembrane protein 200B
Epb41 4 131923413 to 132075321 151908 - protein coding gene erythrocyte membrane protein band 4.1
Nba1 4 131923413 to 141151964 9228551 QTL New Zealand Black autoimmunity 1
Tssr39360 4 131923427 to 131923431 4 + TSS region transcription start site region 39360
Tssr43618 4 131929758 to 131929784 26 - TSS region transcription start site region 43618
Tssr43619 4 131937165 to 131937183 18 - TSS region transcription start site region 43619
Tssr43620 4 131960334 to 131960338 4 - TSS region transcription start site region 43620
Tssr43621 4 131967824 to 131967838 14 - TSS region transcription start site region 43621
Tssr43622 4 131982726 to 131982730 4 - TSS region transcription start site region 43622
Tssr43623 4 131990820 to 131990830 10 - TSS region transcription start site region 43623
Gm27445 4 131992218 to 131992289 71 - miRNA gene predicted gene, 27445
Tssr43624 4 132014306 to 132014309 3 - TSS region transcription start site region 43624
Tssr43625 4 132016144 to 132016146 2 - TSS region transcription start site region 43625
Tssr43626 4 132029970 to 132029975 5 - TSS region transcription start site region 43626
Cpgi14948 4 132048018 to 132049476 1458 CpG island CpG island 14948
Gm13063 4 132048178 to 132048961 783 + lincRNA gene predicted gene 13063
Tssr43627 4 132048960 to 132048972 12 - TSS region transcription start site region 43627
Tssr43628 4 132048988 to 132049012 24 - TSS region transcription start site region 43628
Tssr43629 4 132049028 to 132049044 16 - TSS region transcription start site region 43629
Tssr43630 4 132049058 to 132049156 98 - TSS region transcription start site region 43630
Gm36157 4 132049534 to 132049802 268 + lncRNA gene predicted gene, 36157
Tssr43631 4 132053459 to 132053465 6 - TSS region transcription start site region 43631
Tssr43632 4 132059160 to 132059171 11 - TSS region transcription start site region 43632
Cpgi14949 4 132074390 to 132075564 1174 CpG island CpG island 14949
Gm10300 4 132074697 to 132076992 2295 + protein coding gene predicted gene 10300
Tssr43633 4 132075250 to 132075291 41 - TSS region transcription start site region 43633
Tssr43634 4 132075299 to 132075338 39 - TSS region transcription start site region 43634
Tssr43635 4 132075417 to 132075430 13 - TSS region transcription start site region 43635
Tssr39361 4 132075604 to 132075609 5 + TSS region transcription start site region 39361
Tssr43636 4 132078496 to 132078499 3 - TSS region transcription start site region 43636
Gm13214 4 132093891 to 132094298 407 + pseudogene predicted gene 13214
Gm37711 4 132104830 to 132109363 4533 - unclassified gene predicted gene, 37711
Oprd1 4 132110726 to 132144486 33760 - protein coding gene opioid receptor, delta 1
Cpgi14950 4 132113324 to 132114138 814 CpG island CpG island 14950
n-TAcgc3 4 132125259 to 132125330 71 + tRNA gene nuclear encoded tRNA alanine 3 (anticodon CGC)
Cpgi14951 4 132143817 to 132144860 1043 CpG island CpG island 14951
Tssr43637 4 132144519 to 132144531 12 - TSS region transcription start site region 43637
Gm13215 4 132148413 to 132148884 471 - pseudogene predicted gene 13215
Tssr43638 4 132148917 to 132148931 14 - TSS region transcription start site region 43638
D4Mit250b 4 132178806 to 132179023 217 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250b
D4Mit250a 4 132178806 to 132178934 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 250a
Tssr43639 4 132183330 to 132183336 6 - TSS region transcription start site region 43639
Tssr43640 4 132184387 to 132184391 4 - TSS region transcription start site region 43640
Ythdf2 4 132184916 to 132212256 27340 - protein coding gene YTH N6-methyladenosine RNA binding protein 2
Tssr43641 4 132186582 to 132186602 20 - TSS region transcription start site region 43641
Tssr43642 4 132192278 to 132192281 3 - TSS region transcription start site region 43642
Tssr43643 4 132206439 to 132206443 4 - TSS region transcription start site region 43643
Cpgi14952 4 132210986 to 132212662 1676 CpG island CpG island 14952
Tssr43644 4 132211999 to 132212010 11 - TSS region transcription start site region 43644
Tssr43645 4 132212041 to 132212059 18 - TSS region transcription start site region 43645
Tssr43646 4 132212060 to 132212130 70 - TSS region transcription start site region 43646
Tssr43647 4 132212141 to 132212153 12 - TSS region transcription start site region 43647
Tssr43648 4 132212255 to 132212262 7 - TSS region transcription start site region 43648
Gm22033 4 132218439 to 132218528 89 - miRNA gene predicted gene, 22033
Rps15a-ps4 4 132219988 to 132220489 501 - pseudogene ribosomal protein S15A, pseudogene 4
Tssr43649 4 132220467 to 132220471 4 - TSS region transcription start site region 43649
Gmeb1 4 132221025 to 132261549 40524 - protein coding gene glucocorticoid modulatory element binding protein 1
Gm13252 4 132244946 to 132245266 320 - pseudogene predicted gene 13252
Tssr39362 4 132260504 to 132260517 13 + TSS region transcription start site region 39362
Tssr39363 4 132260521 to 132260538 17 + TSS region transcription start site region 39363
Cpgi14953 4 132260736 to 132261842 1106 CpG island CpG island 14953
Tssr43650 4 132261526 to 132261572 46 - TSS region transcription start site region 43650
Tssr43651 4 132261596 to 132261622 26 - TSS region transcription start site region 43651
Gm28874 4 132265708 to 132268841 3133 + lincRNA gene predicted gene 28874
Gm28872 4 132270056 to 132270213 157 + lincRNA gene predicted gene 28872
Rnu11 4 132270079 to 132270186 107 - snRNA gene U11 small nuclear RNA
Cpgi14954 4 132270094 to 132270537 443 CpG island CpG island 14954
Tssr43652 4 132270209 to 132270214 5 - TSS region transcription start site region 43652
Tssr43653 4 132273755 to 132273758 3 - TSS region transcription start site region 43653