Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130528417-130798420

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nkain1 4 130531602 to 130574173 42571 - protein coding gene Na+/K+ transporting ATPase interacting 1
Tssr43594 4 130531656 to 130531669 13 - TSS region transcription start site region 43594
Cpgi14932 4 130531749 to 130532285 536 CpG island CpG island 14932
Tssr43595 4 130548383 to 130548388 5 - TSS region transcription start site region 43595
Tssr1312 4 130549288 to 130549291 3 - TSS region transcription start site region 1312
1500006G06Rik 4 130572295 to 130573052 757 unclassified gene RIKEN cDNA 1500006G06 gene
Cpgi14931 4 130572995 to 130574482 1487 CpG island CpG island 14931
Tssr43596 4 130574124 to 130574144 20 - TSS region transcription start site region 43596
Tssr43597 4 130574150 to 130574237 87 - TSS region transcription start site region 43597
Cpgi14934 4 130662787 to 130664252 1465 CpG island CpG island 14934
Tssr39239 4 130663212 to 130663224 12 + TSS region transcription start site region 39239
Tssr39240 4 130663277 to 130663294 17 + TSS region transcription start site region 39240
Pum1 4 130663321 to 130781564 118243 + protein coding gene pumilio RNA-binding family member 1
Tssr39241 4 130663353 to 130663412 59 + TSS region transcription start site region 39241
Tssr39242 4 130663417 to 130663420 3 + TSS region transcription start site region 39242
Tssr1313 4 130663674 to 130663701 27 + TSS region transcription start site region 1313
Tssr39243 4 130663802 to 130663805 3 + TSS region transcription start site region 39243
Tssr39244 4 130670202 to 130670206 4 + TSS region transcription start site region 39244
Tssr39245 4 130680861 to 130680865 4 + TSS region transcription start site region 39245
Tssr39246 4 130681245 to 130681247 2 + TSS region transcription start site region 39246
2810017D21Rik 4 130709671 to 130710489 818 unclassified gene RIKEN cDNA 2810017D21 gene
Tssr39247 4 130709696 to 130709703 7 + TSS region transcription start site region 39247
Tssr39248 4 130727640 to 130727644 4 + TSS region transcription start site region 39248
Snord85 4 130749638 to 130749702 64 + snoRNA gene small nucleolar RNA, C/D box 85
Gm12971 4 130758563 to 130762379 3816 + sense intronic lncRNA gene predicted gene 12971
Gm24091 4 130766331 to 130766413 82 + snoRNA gene predicted gene, 24091
Gm26516 4 130774817 to 130779246 4429 - lincRNA gene predicted gene, 26516
Gm23711 4 130775741 to 130775823 82 + snoRNA gene predicted gene, 23711
Tssr39249 4 130783733 to 130783734 1 + TSS region transcription start site region 39249
Gm12972 4 130786069 to 130787855 1786 + lincRNA gene predicted gene 12972
Cpgi14935 4 130791853 to 130793443 1590 CpG island CpG island 14935
Tssr39250 4 130792105 to 130792132 27 + TSS region transcription start site region 39250
Tssr39251 4 130792134 to 130792148 14 + TSS region transcription start site region 39251
Tssr39252 4 130792307 to 130792320 13 + TSS region transcription start site region 39252
Tssr39253 4 130792480 to 130792508 28 + TSS region transcription start site region 39253
Tssr39254 4 130792513 to 130792667 154 + TSS region transcription start site region 39254
Sdc3 4 130792537 to 130826318 33781 + protein coding gene syndecan 3
Tssr39255 4 130792694 to 130792720 26 + TSS region transcription start site region 39255
Tssr39256 4 130792739 to 130792769 30 + TSS region transcription start site region 39256
Tssr39257 4 130793734 to 130793768 34 + TSS region transcription start site region 39257
Tssr39258 4 130795359 to 130795364 5 + TSS region transcription start site region 39258