Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130292995-130854482

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr1310 4 130295432 to 130295436 4 - TSS region transcription start site region 1310
Tssr43582 4 130307509 to 130307519 10 - TSS region transcription start site region 43582
Cpgi14929 4 130307783 to 130309205 1422 CpG island CpG island 14929
Gm10570 4 130308162 to 130308674 512 - unclassified gene predicted gene 10570
Tssr39234 4 130308604 to 130308653 49 + TSS region transcription start site region 39234
Tssr39235 4 130308731 to 130308752 21 + TSS region transcription start site region 39235
Fabp3 4 130308778 to 130315463 6685 + protein coding gene fatty acid binding protein 3, muscle and heart
Zcchc17 4 130315902 to 130359963 44061 - protein coding gene zinc finger, CCHC domain containing 17
Gm35074 4 130317693 to 130333346 15653 + lncRNA gene predicted gene, 35074
Tssr43583 4 130334898 to 130334902 4 - TSS region transcription start site region 43583
Cpgi14930 4 130359665 to 130360522 857 CpG island CpG island 14930
Tssr43584 4 130359915 to 130359966 51 - TSS region transcription start site region 43584
Snrnp40 4 130360132 to 130390026 29894 + protein coding gene small nuclear ribonucleoprotein 40 (U5)
Tssr39236 4 130360159 to 130360208 49 + TSS region transcription start site region 39236
Tssr39237 4 130366858 to 130366865 7 + TSS region transcription start site region 39237
2900017G11Rik 4 130379909 to 130380784 875 unclassified gene RIKEN cDNA 2900017G11 gene
Tssr43585 4 130519663 to 130519682 19 - TSS region transcription start site region 43585
Tssr43586 4 130519833 to 130519844 11 - TSS region transcription start site region 43586
Cpgi14933 4 130519890 to 130520557 667 CpG island CpG island 14933
Tssr43587 4 130519977 to 130519983 6 - TSS region transcription start site region 43587
Tssr43588 4 130520006 to 130520023 17 - TSS region transcription start site region 43588
Tssr43589 4 130520110 to 130520133 23 - TSS region transcription start site region 43589
Tssr43590 4 130520184 to 130520207 23 - TSS region transcription start site region 43590
Tssr43591 4 130520213 to 130520224 11 - TSS region transcription start site region 43591
Tssr43592 4 130520243 to 130520263 20 - TSS region transcription start site region 43592
Tssr1311 4 130520508 to 130520556 48 + TSS region transcription start site region 1311
Tssr39238 4 130520730 to 130520749 19 + TSS region transcription start site region 39238
Tssr43593 4 130525187 to 130525197 10 - TSS region transcription start site region 43593
Nkain1 4 130531602 to 130574173 42571 - protein coding gene Na+/K+ transporting ATPase interacting 1
Tssr43594 4 130531656 to 130531669 13 - TSS region transcription start site region 43594
Cpgi14932 4 130531749 to 130532285 536 CpG island CpG island 14932
Tssr43595 4 130548383 to 130548388 5 - TSS region transcription start site region 43595
Tssr1312 4 130549288 to 130549291 3 - TSS region transcription start site region 1312
1500006G06Rik 4 130572295 to 130573052 757 unclassified gene RIKEN cDNA 1500006G06 gene
Cpgi14931 4 130572995 to 130574482 1487 CpG island CpG island 14931
Tssr43596 4 130574124 to 130574144 20 - TSS region transcription start site region 43596
Tssr43597 4 130574150 to 130574237 87 - TSS region transcription start site region 43597
Cpgi14934 4 130662787 to 130664252 1465 CpG island CpG island 14934
Tssr39239 4 130663212 to 130663224 12 + TSS region transcription start site region 39239
Tssr39240 4 130663277 to 130663294 17 + TSS region transcription start site region 39240
Pum1 4 130663321 to 130781564 118243 + protein coding gene pumilio RNA-binding family member 1
Tssr39241 4 130663353 to 130663412 59 + TSS region transcription start site region 39241
Tssr39242 4 130663417 to 130663420 3 + TSS region transcription start site region 39242
Tssr1313 4 130663674 to 130663701 27 + TSS region transcription start site region 1313
Tssr39243 4 130663802 to 130663805 3 + TSS region transcription start site region 39243
Tssr39244 4 130670202 to 130670206 4 + TSS region transcription start site region 39244
Tssr39245 4 130680861 to 130680865 4 + TSS region transcription start site region 39245
Tssr39246 4 130681245 to 130681247 2 + TSS region transcription start site region 39246
2810017D21Rik 4 130709671 to 130710489 818 unclassified gene RIKEN cDNA 2810017D21 gene
Tssr39247 4 130709696 to 130709703 7 + TSS region transcription start site region 39247
Tssr39248 4 130727640 to 130727644 4 + TSS region transcription start site region 39248
Snord85 4 130749638 to 130749702 64 + snoRNA gene small nucleolar RNA, C/D box 85
Gm12971 4 130758563 to 130762379 3816 + sense intronic lncRNA gene predicted gene 12971
Gm24091 4 130766331 to 130766413 82 + snoRNA gene predicted gene, 24091
Gm26516 4 130774817 to 130779246 4429 - lincRNA gene predicted gene, 26516
Gm23711 4 130775741 to 130775823 82 + snoRNA gene predicted gene, 23711
Tssr39249 4 130783733 to 130783734 1 + TSS region transcription start site region 39249
Gm12972 4 130786069 to 130787855 1786 + lincRNA gene predicted gene 12972
Cpgi14935 4 130791853 to 130793443 1590 CpG island CpG island 14935
Tssr39250 4 130792105 to 130792132 27 + TSS region transcription start site region 39250
Tssr39251 4 130792134 to 130792148 14 + TSS region transcription start site region 39251
Tssr39252 4 130792307 to 130792320 13 + TSS region transcription start site region 39252
Tssr39253 4 130792480 to 130792508 28 + TSS region transcription start site region 39253
Tssr39254 4 130792513 to 130792667 154 + TSS region transcription start site region 39254
Sdc3 4 130792537 to 130826318 33781 + protein coding gene syndecan 3
Tssr39255 4 130792694 to 130792720 26 + TSS region transcription start site region 39255
Tssr39256 4 130792739 to 130792769 30 + TSS region transcription start site region 39256
Tssr39257 4 130793734 to 130793768 34 + TSS region transcription start site region 39257
Tssr39258 4 130795359 to 130795364 5 + TSS region transcription start site region 39258
Gm12970 4 130811617 to 130812326 709 - antisense lncRNA gene predicted gene 12970
Tssr39259 4 130811662 to 130811673 11 + TSS region transcription start site region 39259
Tssr39260 4 130811678 to 130811699 21 + TSS region transcription start site region 39260
Tssr43598 4 130812446 to 130812478 32 - TSS region transcription start site region 43598
Tssr39261 4 130812562 to 130812570 8 + TSS region transcription start site region 39261
Tssr39262 4 130812591 to 130812601 10 + TSS region transcription start site region 39262
Tssr39263 4 130816839 to 130816853 14 + TSS region transcription start site region 39263
Tssr39264 4 130816873 to 130816911 38 + TSS region transcription start site region 39264
Tssr39265 4 130818591 to 130818606 15 + TSS region transcription start site region 39265
Tssr39266 4 130818613 to 130818628 15 + TSS region transcription start site region 39266
Tssr39267 4 130818631 to 130818647 16 + TSS region transcription start site region 39267
Tssr39268 4 130818655 to 130818677 22 + TSS region transcription start site region 39268
Tssr43599 4 130818689 to 130818709 20 - TSS region transcription start site region 43599
Tssr39269 4 130818702 to 130818714 12 + TSS region transcription start site region 39269
Tssr43600 4 130818712 to 130818752 40 - TSS region transcription start site region 43600
Tssr39270 4 130818727 to 130818743 16 + TSS region transcription start site region 39270
Tssr39271 4 130818766 to 130818788 22 + TSS region transcription start site region 39271
Tssr43601 4 130818769 to 130818919 150 - TSS region transcription start site region 43601
Tssr39272 4 130818788 to 130818804 16 + TSS region transcription start site region 39272
Tssr39273 4 130818848 to 130818859 11 + TSS region transcription start site region 39273
Tssr39274 4 130818890 to 130818901 11 + TSS region transcription start site region 39274
Tssr39275 4 130818906 to 130818917 11 + TSS region transcription start site region 39275
Tssr39276 4 130818942 to 130818953 11 + TSS region transcription start site region 39276
Tssr39277 4 130818958 to 130818970 12 + TSS region transcription start site region 39277
Tssr39278 4 130818971 to 130818981 10 + TSS region transcription start site region 39278
Tssr39279 4 130822180 to 130822201 21 + TSS region transcription start site region 39279
Tssr39280 4 130822656 to 130822668 12 + TSS region transcription start site region 39280
Tssr39281 4 130822722 to 130822726 4 + TSS region transcription start site region 39281
Tssr39282 4 130823042 to 130823047 5 + TSS region transcription start site region 39282
Tssr39283 4 130823112 to 130823127 15 + TSS region transcription start site region 39283
Tssr39284 4 130823313 to 130823335 22 + TSS region transcription start site region 39284
Tssr39285 4 130823383 to 130823399 16 + TSS region transcription start site region 39285
Tssr39286 4 130823450 to 130823466 16 + TSS region transcription start site region 39286
Tssr39287 4 130823476 to 130823480 4 + TSS region transcription start site region 39287
Tssr39288 4 130823511 to 130823524 13 + TSS region transcription start site region 39288
Tssr39289 4 130823640 to 130823645 5 + TSS region transcription start site region 39289
Tssr39290 4 130823647 to 130823652 5 + TSS region transcription start site region 39290
Tssr39291 4 130823795 to 130823798 3 + TSS region transcription start site region 39291
Tssr39292 4 130823872 to 130823881 9 + TSS region transcription start site region 39292
Gm26716 4 130824394 to 130826313 1919 - antisense lncRNA gene predicted gene, 26716
Tssr39293 4 130825866 to 130825878 12 + TSS region transcription start site region 39293
Tssr39294 4 130826021 to 130826038 17 + TSS region transcription start site region 39294
Tssr39295 4 130826187 to 130826203 16 + TSS region transcription start site region 39295
Tssr39296 4 130826213 to 130826231 18 + TSS region transcription start site region 39296
Gm42316 4 130827769 to 130834247 6478 - lncRNA gene predicted gene, 42316
Tssr43602 4 130839947 to 130839960 13 - TSS region transcription start site region 43602