Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130099087-131729108

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242 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col16a1 4 130047840 to 130099283 51443 + protein coding gene collagen, type XVI, alpha 1
Tssr39229 4 130104886 to 130104904 18 + TSS region transcription start site region 39229
Gm40258 4 130105455 to 130108282 2827 - lncRNA gene predicted gene, 40258
Cpgi14920 4 130107258 to 130108067 809 CpG island CpG island 14920
Pef1 4 130107556 to 130128134 20578 + protein coding gene penta-EF hand domain containing 1
Tssr39230 4 130107600 to 130107606 6 + TSS region transcription start site region 39230
Tssr39231 4 130107609 to 130107620 11 + TSS region transcription start site region 39231
Tssr39232 4 130108404 to 130108407 3 + TSS region transcription start site region 39232
Tssr39233 4 130127676 to 130127697 21 + TSS region transcription start site region 39233
Hcrtr1 4 130130217 to 130139359 9142 - protein coding gene hypocretin (orexin) receptor 1
Cpgi14921 4 130138327 to 130139609 1282 CpG island CpG island 14921
Tssr43571 4 130139149 to 130139162 13 - TSS region transcription start site region 43571
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm40259 4 130143954 to 130148919 4965 + lncRNA gene predicted gene, 40259
D4Mit309 4 130159472 to 130159596 124 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 309
Tinagl1 4 130165600 to 130175122 9522 - protein coding gene tubulointerstitial nephritis antigen-like 1
Cpgi14922 4 130165927 to 130166383 456 CpG island CpG island 14922
Cpgi14923 4 130167428 to 130167807 379 CpG island CpG island 14923
Tssr43572 4 130168054 to 130168058 4 - TSS region transcription start site region 43572
D4Mit281 4 130172113 to 130172215 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 281
Cpgi14924 4 130173911 to 130174162 251 CpG island CpG island 14924
Cpgi14925 4 130174706 to 130175123 417 CpG island CpG island 14925
Tssr43573 4 130174779 to 130174808 29 - TSS region transcription start site region 43573
Tssr43574 4 130175113 to 130175138 25 - TSS region transcription start site region 43574
Tssr43575 4 130177164 to 130177186 22 - TSS region transcription start site region 43575
Cpgi14926 4 130198973 to 130199575 602 CpG island CpG island 14926
Gm853 4 130209109 to 130222401 13292 - protein coding gene predicted gene 853
Tssr43576 4 130222326 to 130222349 23 - TSS region transcription start site region 43576
Gm46724 4 130236579 to 130249079 12500 + lncRNA gene predicted gene, 46724
Serinc2 4 130253495 to 130279200 25705 - protein coding gene serine incorporator 2
Cpgi14927 4 130264771 to 130265050 279 CpG island CpG island 14927
Cpgi14928 4 130274830 to 130275838 1008 CpG island CpG island 14928
Tssr43577 4 130275199 to 130275210 11 - TSS region transcription start site region 43577
Tssr43578 4 130275213 to 130275228 15 - TSS region transcription start site region 43578
Tssr43579 4 130275523 to 130275537 14 - TSS region transcription start site region 43579
Tssr43580 4 130275542 to 130275590 48 - TSS region transcription start site region 43580
Gm34957 4 130275656 to 130280859 5203 + lncRNA gene predicted gene, 34957
Tssr43581 4 130279217 to 130279231 14 - TSS region transcription start site region 43581
Tssr1310 4 130295432 to 130295436 4 - TSS region transcription start site region 1310
Tssr43582 4 130307509 to 130307519 10 - TSS region transcription start site region 43582
Cpgi14929 4 130307783 to 130309205 1422 CpG island CpG island 14929
Gm10570 4 130308162 to 130308674 512 - unclassified gene predicted gene 10570
Tssr39234 4 130308604 to 130308653 49 + TSS region transcription start site region 39234
Tssr39235 4 130308731 to 130308752 21 + TSS region transcription start site region 39235
Fabp3 4 130308778 to 130315463 6685 + protein coding gene fatty acid binding protein 3, muscle and heart
Zcchc17 4 130315902 to 130359963 44061 - protein coding gene zinc finger, CCHC domain containing 17
Gm35074 4 130317693 to 130333346 15653 + lncRNA gene predicted gene, 35074
Tssr43583 4 130334898 to 130334902 4 - TSS region transcription start site region 43583
Cpgi14930 4 130359665 to 130360522 857 CpG island CpG island 14930
Tssr43584 4 130359915 to 130359966 51 - TSS region transcription start site region 43584
Snrnp40 4 130360132 to 130390026 29894 + protein coding gene small nuclear ribonucleoprotein 40 (U5)
Tssr39236 4 130360159 to 130360208 49 + TSS region transcription start site region 39236
Tssr39237 4 130366858 to 130366865 7 + TSS region transcription start site region 39237
2900017G11Rik 4 130379909 to 130380784 875 unclassified gene RIKEN cDNA 2900017G11 gene
Tssr43585 4 130519663 to 130519682 19 - TSS region transcription start site region 43585
Tssr43586 4 130519833 to 130519844 11 - TSS region transcription start site region 43586
Cpgi14933 4 130519890 to 130520557 667 CpG island CpG island 14933
Tssr43587 4 130519977 to 130519983 6 - TSS region transcription start site region 43587
Tssr43588 4 130520006 to 130520023 17 - TSS region transcription start site region 43588
Tssr43589 4 130520110 to 130520133 23 - TSS region transcription start site region 43589
Tssr43590 4 130520184 to 130520207 23 - TSS region transcription start site region 43590
Tssr43591 4 130520213 to 130520224 11 - TSS region transcription start site region 43591
Tssr43592 4 130520243 to 130520263 20 - TSS region transcription start site region 43592
Tssr1311 4 130520508 to 130520556 48 + TSS region transcription start site region 1311
Tssr39238 4 130520730 to 130520749 19 + TSS region transcription start site region 39238
Tssr43593 4 130525187 to 130525197 10 - TSS region transcription start site region 43593
Nkain1 4 130531602 to 130574173 42571 - protein coding gene Na+/K+ transporting ATPase interacting 1
Tssr43594 4 130531656 to 130531669 13 - TSS region transcription start site region 43594
Cpgi14932 4 130531749 to 130532285 536 CpG island CpG island 14932
Tssr43595 4 130548383 to 130548388 5 - TSS region transcription start site region 43595
Tssr1312 4 130549288 to 130549291 3 - TSS region transcription start site region 1312
1500006G06Rik 4 130572295 to 130573052 757 unclassified gene RIKEN cDNA 1500006G06 gene
Cpgi14931 4 130572995 to 130574482 1487 CpG island CpG island 14931
Tssr43596 4 130574124 to 130574144 20 - TSS region transcription start site region 43596
Tssr43597 4 130574150 to 130574237 87 - TSS region transcription start site region 43597
Cpgi14934 4 130662787 to 130664252 1465 CpG island CpG island 14934
Tssr39239 4 130663212 to 130663224 12 + TSS region transcription start site region 39239
Tssr39240 4 130663277 to 130663294 17 + TSS region transcription start site region 39240
Pum1 4 130663321 to 130781564 118243 + protein coding gene pumilio RNA-binding family member 1
Tssr39241 4 130663353 to 130663412 59 + TSS region transcription start site region 39241
Tssr39242 4 130663417 to 130663420 3 + TSS region transcription start site region 39242
Tssr1313 4 130663674 to 130663701 27 + TSS region transcription start site region 1313
Tssr39243 4 130663802 to 130663805 3 + TSS region transcription start site region 39243
Tssr39244 4 130670202 to 130670206 4 + TSS region transcription start site region 39244
Tssr39245 4 130680861 to 130680865 4 + TSS region transcription start site region 39245
Tssr39246 4 130681245 to 130681247 2 + TSS region transcription start site region 39246
2810017D21Rik 4 130709671 to 130710489 818 unclassified gene RIKEN cDNA 2810017D21 gene
Tssr39247 4 130709696 to 130709703 7 + TSS region transcription start site region 39247
Tssr39248 4 130727640 to 130727644 4 + TSS region transcription start site region 39248
Snord85 4 130749638 to 130749702 64 + snoRNA gene small nucleolar RNA, C/D box 85
Gm12971 4 130758563 to 130762379 3816 + sense intronic lncRNA gene predicted gene 12971
Gm24091 4 130766331 to 130766413 82 + snoRNA gene predicted gene, 24091
Gm26516 4 130774817 to 130779246 4429 - lincRNA gene predicted gene, 26516
Gm23711 4 130775741 to 130775823 82 + snoRNA gene predicted gene, 23711
Tssr39249 4 130783733 to 130783734 1 + TSS region transcription start site region 39249
Gm12972 4 130786069 to 130787855 1786 + lincRNA gene predicted gene 12972
Cpgi14935 4 130791853 to 130793443 1590 CpG island CpG island 14935
Tssr39250 4 130792105 to 130792132 27 + TSS region transcription start site region 39250
Tssr39251 4 130792134 to 130792148 14 + TSS region transcription start site region 39251
Tssr39252 4 130792307 to 130792320 13 + TSS region transcription start site region 39252
Tssr39253 4 130792480 to 130792508 28 + TSS region transcription start site region 39253
Tssr39254 4 130792513 to 130792667 154 + TSS region transcription start site region 39254
Sdc3 4 130792537 to 130826318 33781 + protein coding gene syndecan 3
Tssr39255 4 130792694 to 130792720 26 + TSS region transcription start site region 39255
Tssr39256 4 130792739 to 130792769 30 + TSS region transcription start site region 39256
Tssr39257 4 130793734 to 130793768 34 + TSS region transcription start site region 39257
Tssr39258 4 130795359 to 130795364 5 + TSS region transcription start site region 39258
Gm12970 4 130811617 to 130812326 709 - antisense lncRNA gene predicted gene 12970
Tssr39259 4 130811662 to 130811673 11 + TSS region transcription start site region 39259
Tssr39260 4 130811678 to 130811699 21 + TSS region transcription start site region 39260
Tssr43598 4 130812446 to 130812478 32 - TSS region transcription start site region 43598
Tssr39261 4 130812562 to 130812570 8 + TSS region transcription start site region 39261
Tssr39262 4 130812591 to 130812601 10 + TSS region transcription start site region 39262
Tssr39263 4 130816839 to 130816853 14 + TSS region transcription start site region 39263
Tssr39264 4 130816873 to 130816911 38 + TSS region transcription start site region 39264
Tssr39265 4 130818591 to 130818606 15 + TSS region transcription start site region 39265
Tssr39266 4 130818613 to 130818628 15 + TSS region transcription start site region 39266
Tssr39267 4 130818631 to 130818647 16 + TSS region transcription start site region 39267
Tssr39268 4 130818655 to 130818677 22 + TSS region transcription start site region 39268
Tssr43599 4 130818689 to 130818709 20 - TSS region transcription start site region 43599
Tssr39269 4 130818702 to 130818714 12 + TSS region transcription start site region 39269
Tssr43600 4 130818712 to 130818752 40 - TSS region transcription start site region 43600
Tssr39270 4 130818727 to 130818743 16 + TSS region transcription start site region 39270
Tssr39271 4 130818766 to 130818788 22 + TSS region transcription start site region 39271
Tssr43601 4 130818769 to 130818919 150 - TSS region transcription start site region 43601
Tssr39272 4 130818788 to 130818804 16 + TSS region transcription start site region 39272
Tssr39273 4 130818848 to 130818859 11 + TSS region transcription start site region 39273
Tssr39274 4 130818890 to 130818901 11 + TSS region transcription start site region 39274
Tssr39275 4 130818906 to 130818917 11 + TSS region transcription start site region 39275
Tssr39276 4 130818942 to 130818953 11 + TSS region transcription start site region 39276
Tssr39277 4 130818958 to 130818970 12 + TSS region transcription start site region 39277
Tssr39278 4 130818971 to 130818981 10 + TSS region transcription start site region 39278
Tssr39279 4 130822180 to 130822201 21 + TSS region transcription start site region 39279
Tssr39280 4 130822656 to 130822668 12 + TSS region transcription start site region 39280
Tssr39281 4 130822722 to 130822726 4 + TSS region transcription start site region 39281
Tssr39282 4 130823042 to 130823047 5 + TSS region transcription start site region 39282
Tssr39283 4 130823112 to 130823127 15 + TSS region transcription start site region 39283
Tssr39284 4 130823313 to 130823335 22 + TSS region transcription start site region 39284
Tssr39285 4 130823383 to 130823399 16 + TSS region transcription start site region 39285
Tssr39286 4 130823450 to 130823466 16 + TSS region transcription start site region 39286
Tssr39287 4 130823476 to 130823480 4 + TSS region transcription start site region 39287
Tssr39288 4 130823511 to 130823524 13 + TSS region transcription start site region 39288
Tssr39289 4 130823640 to 130823645 5 + TSS region transcription start site region 39289
Tssr39290 4 130823647 to 130823652 5 + TSS region transcription start site region 39290
Tssr39291 4 130823795 to 130823798 3 + TSS region transcription start site region 39291
Tssr39292 4 130823872 to 130823881 9 + TSS region transcription start site region 39292
Gm26716 4 130824394 to 130826313 1919 - antisense lncRNA gene predicted gene, 26716
Tssr39293 4 130825866 to 130825878 12 + TSS region transcription start site region 39293
Tssr39294 4 130826021 to 130826038 17 + TSS region transcription start site region 39294
Tssr39295 4 130826187 to 130826203 16 + TSS region transcription start site region 39295
Tssr39296 4 130826213 to 130826231 18 + TSS region transcription start site region 39296
Gm42316 4 130827769 to 130834247 6478 - lncRNA gene predicted gene, 42316
Tssr43602 4 130839947 to 130839960 13 - TSS region transcription start site region 43602
Gm22660 4 130857751 to 130857880 129 - snoRNA gene predicted gene, 22660
Cpgi14936 4 130861583 to 130862102 519 CpG island CpG island 14936
Gm35294 4 130871050 to 130872898 1848 + lncRNA gene predicted gene, 35294
Tssr39297 4 130884916 to 130884964 48 + TSS region transcription start site region 39297
Tssr39298 4 130905235 to 130905270 35 + TSS region transcription start site region 39298
Gm38599 4 130906051 to 130914563 8512 - lncRNA gene predicted gene, 38599
Tssr39299 4 130913120 to 130913137 17 + TSS region transcription start site region 39299
Laptm5 4 130913125 to 130936141 23016 + protein coding gene lysosomal-associated protein transmembrane 5
Tssr39300 4 130913179 to 130913194 15 + TSS region transcription start site region 39300
Tssr39301 4 130913217 to 130913226 9 + TSS region transcription start site region 39301
Tssr39302 4 130913264 to 130913348 84 + TSS region transcription start site region 39302
Tssr39303 4 130913365 to 130913370 5 + TSS region transcription start site region 39303
Tssr1314 4 130914087 to 130914108 21 - TSS region transcription start site region 1314
Tssr43603 4 130914128 to 130914144 16 - TSS region transcription start site region 43603
Tssr39304 4 130914349 to 130914353 4 + TSS region transcription start site region 39304
Tssr39305 4 130916012 to 130916019 7 + TSS region transcription start site region 39305
Tssr39306 4 130926104 to 130926160 56 + TSS region transcription start site region 39306
Tssr39307 4 130926765 to 130926779 14 + TSS region transcription start site region 39307
Tssr39308 4 130928637 to 130928656 19 + TSS region transcription start site region 39308
Tssr39309 4 130928677 to 130928688 11 + TSS region transcription start site region 39309
Tssr39310 4 130928697 to 130928702 5 + TSS region transcription start site region 39310
Tssr39311 4 130928711 to 130928719 8 + TSS region transcription start site region 39311
Tssr39312 4 130929408 to 130929485 77 + TSS region transcription start site region 39312
Tssr39313 4 130929497 to 130929514 17 + TSS region transcription start site region 39313
Tssr43604 4 130929499 to 130929532 33 - TSS region transcription start site region 43604
Tssr39314 4 130930762 to 130930780 18 + TSS region transcription start site region 39314
Tssr39315 4 130930784 to 130930802 18 + TSS region transcription start site region 39315
Tssr39316 4 130930836 to 130930847 11 + TSS region transcription start site region 39316
Tssr39317 4 130932012 to 130932025 13 + TSS region transcription start site region 39317
Tssr1315 4 130932125 to 130932132 7 + TSS region transcription start site region 1315
Tssr39318 4 130932133 to 130932144 11 + TSS region transcription start site region 39318
Tssr39319 4 130932161 to 130932177 16 + TSS region transcription start site region 39319
Tssr39320 4 130932232 to 130932239 7 + TSS region transcription start site region 39320
Tssr39321 4 130932248 to 130932258 10 + TSS region transcription start site region 39321
Tssr39322 4 130932300 to 130932311 11 + TSS region transcription start site region 39322
Tssr39323 4 130932313 to 130932325 12 + TSS region transcription start site region 39323
Tssr39324 4 130932349 to 130932356 7 + TSS region transcription start site region 39324
Tssr39325 4 130932359 to 130932370 11 + TSS region transcription start site region 39325
Tssr39326 4 130932374 to 130932391 17 + TSS region transcription start site region 39326
Tssr39327 4 130932395 to 130932410 15 + TSS region transcription start site region 39327
Tssr39328 4 130932418 to 130932436 18 + TSS region transcription start site region 39328
Tssr39329 4 130932458 to 130932555 97 + TSS region transcription start site region 39329
Tssr39330 4 130932556 to 130932612 56 + TSS region transcription start site region 39330
Tssr39331 4 130932617 to 130932644 27 + TSS region transcription start site region 39331
Tssr39332 4 130934457 to 130934468 11 + TSS region transcription start site region 39332
Tssr39333 4 130934480 to 130934483 3 + TSS region transcription start site region 39333
Tssr39334 4 130934508 to 130934532 24 + TSS region transcription start site region 39334