Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130057258-130158067

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17 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col16a1 4 130047840 to 130099283 51443 + protein coding gene collagen, type XVI, alpha 1
Tssr39227 4 130061144 to 130061164 20 + TSS region transcription start site region 39227
Tssr39228 4 130061166 to 130061186 20 + TSS region transcription start site region 39228
Gm46871 4 130076240 to 130079510 3270 - lncRNA gene predicted gene, 46871
Tssr39229 4 130104886 to 130104904 18 + TSS region transcription start site region 39229
Gm40258 4 130105455 to 130108282 2827 - lncRNA gene predicted gene, 40258
Cpgi14920 4 130107258 to 130108067 809 CpG island CpG island 14920
Pef1 4 130107556 to 130128134 20578 + protein coding gene penta-EF hand domain containing 1
Tssr39230 4 130107600 to 130107606 6 + TSS region transcription start site region 39230
Tssr39231 4 130107609 to 130107620 11 + TSS region transcription start site region 39231
Tssr39232 4 130108404 to 130108407 3 + TSS region transcription start site region 39232
Tssr39233 4 130127676 to 130127697 21 + TSS region transcription start site region 39233
Hcrtr1 4 130130217 to 130139359 9142 - protein coding gene hypocretin (orexin) receptor 1
Cpgi14921 4 130138327 to 130139609 1282 CpG island CpG island 14921
Tssr43571 4 130139149 to 130139162 13 - TSS region transcription start site region 43571
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm40259 4 130143954 to 130148919 4965 + lncRNA gene predicted gene, 40259