Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:130054909-130705784

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col16a1 4 130047840 to 130099283 51443 + protein coding gene collagen, type XVI, alpha 1
Tssr39222 4 130055023 to 130055047 24 + TSS region transcription start site region 39222
Tssr39223 4 130055090 to 130055101 11 + TSS region transcription start site region 39223
Tssr39224 4 130055279 to 130055284 5 + TSS region transcription start site region 39224
Tssr1309 4 130055351 to 130055379 28 + TSS region transcription start site region 1309
Tssr39225 4 130056173 to 130056218 45 + TSS region transcription start site region 39225
Tssr39226 4 130056766 to 130056776 10 + TSS region transcription start site region 39226
Tssr39227 4 130061144 to 130061164 20 + TSS region transcription start site region 39227
Tssr39228 4 130061166 to 130061186 20 + TSS region transcription start site region 39228
Gm46871 4 130076240 to 130079510 3270 - lncRNA gene predicted gene, 46871
Tssr39229 4 130104886 to 130104904 18 + TSS region transcription start site region 39229
Gm40258 4 130105455 to 130108282 2827 - lncRNA gene predicted gene, 40258
Cpgi14920 4 130107258 to 130108067 809 CpG island CpG island 14920
Pef1 4 130107556 to 130128134 20578 + protein coding gene penta-EF hand domain containing 1
Tssr39230 4 130107600 to 130107606 6 + TSS region transcription start site region 39230
Tssr39231 4 130107609 to 130107620 11 + TSS region transcription start site region 39231
Tssr39232 4 130108404 to 130108407 3 + TSS region transcription start site region 39232
Tssr39233 4 130127676 to 130127697 21 + TSS region transcription start site region 39233
Hcrtr1 4 130130217 to 130139359 9142 - protein coding gene hypocretin (orexin) receptor 1
Cpgi14921 4 130138327 to 130139609 1282 CpG island CpG island 14921
Tssr43571 4 130139149 to 130139162 13 - TSS region transcription start site region 43571
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm40259 4 130143954 to 130148919 4965 + lncRNA gene predicted gene, 40259
D4Mit309 4 130159472 to 130159596 124 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 309
Tinagl1 4 130165600 to 130175122 9522 - protein coding gene tubulointerstitial nephritis antigen-like 1
Cpgi14922 4 130165927 to 130166383 456 CpG island CpG island 14922
Cpgi14923 4 130167428 to 130167807 379 CpG island CpG island 14923
Tssr43572 4 130168054 to 130168058 4 - TSS region transcription start site region 43572
D4Mit281 4 130172113 to 130172215 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 281
Cpgi14924 4 130173911 to 130174162 251 CpG island CpG island 14924
Cpgi14925 4 130174706 to 130175123 417 CpG island CpG island 14925
Tssr43573 4 130174779 to 130174808 29 - TSS region transcription start site region 43573
Tssr43574 4 130175113 to 130175138 25 - TSS region transcription start site region 43574
Tssr43575 4 130177164 to 130177186 22 - TSS region transcription start site region 43575
Cpgi14926 4 130198973 to 130199575 602 CpG island CpG island 14926
Gm853 4 130209109 to 130222401 13292 - protein coding gene predicted gene 853
Tssr43576 4 130222326 to 130222349 23 - TSS region transcription start site region 43576
Gm46724 4 130236579 to 130249079 12500 + lncRNA gene predicted gene, 46724
Serinc2 4 130253495 to 130279200 25705 - protein coding gene serine incorporator 2
Cpgi14927 4 130264771 to 130265050 279 CpG island CpG island 14927
Cpgi14928 4 130274830 to 130275838 1008 CpG island CpG island 14928
Tssr43577 4 130275199 to 130275210 11 - TSS region transcription start site region 43577
Tssr43578 4 130275213 to 130275228 15 - TSS region transcription start site region 43578
Tssr43579 4 130275523 to 130275537 14 - TSS region transcription start site region 43579
Tssr43580 4 130275542 to 130275590 48 - TSS region transcription start site region 43580
Gm34957 4 130275656 to 130280859 5203 + lncRNA gene predicted gene, 34957
Tssr43581 4 130279217 to 130279231 14 - TSS region transcription start site region 43581
Tssr1310 4 130295432 to 130295436 4 - TSS region transcription start site region 1310
Tssr43582 4 130307509 to 130307519 10 - TSS region transcription start site region 43582
Cpgi14929 4 130307783 to 130309205 1422 CpG island CpG island 14929
Gm10570 4 130308162 to 130308674 512 - unclassified gene predicted gene 10570
Tssr39234 4 130308604 to 130308653 49 + TSS region transcription start site region 39234
Tssr39235 4 130308731 to 130308752 21 + TSS region transcription start site region 39235
Fabp3 4 130308778 to 130315463 6685 + protein coding gene fatty acid binding protein 3, muscle and heart
Zcchc17 4 130315902 to 130359963 44061 - protein coding gene zinc finger, CCHC domain containing 17
Gm35074 4 130317693 to 130333346 15653 + lncRNA gene predicted gene, 35074
Tssr43583 4 130334898 to 130334902 4 - TSS region transcription start site region 43583
Cpgi14930 4 130359665 to 130360522 857 CpG island CpG island 14930
Tssr43584 4 130359915 to 130359966 51 - TSS region transcription start site region 43584
Snrnp40 4 130360132 to 130390026 29894 + protein coding gene small nuclear ribonucleoprotein 40 (U5)
Tssr39236 4 130360159 to 130360208 49 + TSS region transcription start site region 39236
Tssr39237 4 130366858 to 130366865 7 + TSS region transcription start site region 39237
2900017G11Rik 4 130379909 to 130380784 875 unclassified gene RIKEN cDNA 2900017G11 gene
Tssr43585 4 130519663 to 130519682 19 - TSS region transcription start site region 43585
Tssr43586 4 130519833 to 130519844 11 - TSS region transcription start site region 43586
Cpgi14933 4 130519890 to 130520557 667 CpG island CpG island 14933
Tssr43587 4 130519977 to 130519983 6 - TSS region transcription start site region 43587
Tssr43588 4 130520006 to 130520023 17 - TSS region transcription start site region 43588
Tssr43589 4 130520110 to 130520133 23 - TSS region transcription start site region 43589
Tssr43590 4 130520184 to 130520207 23 - TSS region transcription start site region 43590
Tssr43591 4 130520213 to 130520224 11 - TSS region transcription start site region 43591
Tssr43592 4 130520243 to 130520263 20 - TSS region transcription start site region 43592
Tssr1311 4 130520508 to 130520556 48 + TSS region transcription start site region 1311
Tssr39238 4 130520730 to 130520749 19 + TSS region transcription start site region 39238
Tssr43593 4 130525187 to 130525197 10 - TSS region transcription start site region 43593
Nkain1 4 130531602 to 130574173 42571 - protein coding gene Na+/K+ transporting ATPase interacting 1
Tssr43594 4 130531656 to 130531669 13 - TSS region transcription start site region 43594
Cpgi14932 4 130531749 to 130532285 536 CpG island CpG island 14932
Tssr43595 4 130548383 to 130548388 5 - TSS region transcription start site region 43595
Tssr1312 4 130549288 to 130549291 3 - TSS region transcription start site region 1312
1500006G06Rik 4 130572295 to 130573052 757 unclassified gene RIKEN cDNA 1500006G06 gene
Cpgi14931 4 130572995 to 130574482 1487 CpG island CpG island 14931
Tssr43596 4 130574124 to 130574144 20 - TSS region transcription start site region 43596
Tssr43597 4 130574150 to 130574237 87 - TSS region transcription start site region 43597
Cpgi14934 4 130662787 to 130664252 1465 CpG island CpG island 14934
Tssr39239 4 130663212 to 130663224 12 + TSS region transcription start site region 39239
Tssr39240 4 130663277 to 130663294 17 + TSS region transcription start site region 39240
Pum1 4 130663321 to 130781564 118243 + protein coding gene pumilio RNA-binding family member 1
Tssr39241 4 130663353 to 130663412 59 + TSS region transcription start site region 39241
Tssr39242 4 130663417 to 130663420 3 + TSS region transcription start site region 39242
Tssr1313 4 130663674 to 130663701 27 + TSS region transcription start site region 1313
Tssr39243 4 130663802 to 130663805 3 + TSS region transcription start site region 39243
Tssr39244 4 130670202 to 130670206 4 + TSS region transcription start site region 39244
Tssr39245 4 130680861 to 130680865 4 + TSS region transcription start site region 39245
Tssr39246 4 130681245 to 130681247 2 + TSS region transcription start site region 39246