Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129825596-130035596

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptp4a2 4 129820204 to 129850003 29799 + protein coding gene protein tyrosine phosphatase 4a2
Tssr39197 4 129827297 to 129827301 4 + TSS region transcription start site region 39197
Tssr39198 4 129839162 to 129839166 4 + TSS region transcription start site region 39198
Tssr39199 4 129839239 to 129839269 30 + TSS region transcription start site region 39199
Tssr39200 4 129847846 to 129847870 24 + TSS region transcription start site region 39200
Tssr39201 4 129848452 to 129848476 24 + TSS region transcription start site region 39201
Tssr39202 4 129848505 to 129848515 10 + TSS region transcription start site region 39202
Tssr39203 4 129848693 to 129848705 12 + TSS region transcription start site region 39203
Tssr39204 4 129849166 to 129849187 21 + TSS region transcription start site region 39204
1700108I11Rik 4 129852503 to 129853676 1173 - lncRNA gene RIKEN cDNA 1700108I11 gene
Tssr43570 4 129853211 to 129853250 39 - TSS region transcription start site region 43570
Gm10571 4 129855071 to 129856710 1639 + pseudogene predicted gene 10571
Gm23845 4 129895573 to 129895724 151 + snRNA gene predicted gene, 23845
Cpgi14910 4 129898926 to 129899085 159 CpG island CpG island 14910
Tssr39205 4 129899042 to 129899048 6 + TSS region transcription start site region 39205
Gm12966 4 129899093 to 129899902 809 + pseudogene predicted gene 12966
Tssr39206 4 129906192 to 129906203 11 + TSS region transcription start site region 39206
Tssr39207 4 129906205 to 129906244 39 + TSS region transcription start site region 39207
E330017L17Rik 4 129906226 to 129908996 2770 + lincRNA gene RIKEN cDNA E330017L17 gene
Cpgi14911 4 129928507 to 129928718 211 CpG island CpG island 14911
Tssr39208 4 129928767 to 129928770 3 + TSS region transcription start site region 39208
Tssr39209 4 129928789 to 129928800 11 + TSS region transcription start site region 39209
Spocd1 4 129929249 to 129957115 27866 + protein coding gene SPOC domain containing 1
Albq19 4 129930596 to 129930596 0 QTL albuminuria QTL 19
Cpgi14912 4 129959895 to 129960797 902 CpG island CpG island 14912
1700003M07Rik 4 129960374 to 129963657 3283 + lincRNA gene RIKEN cDNA 1700003M07 gene
Tssr39210 4 129960760 to 129960781 21 + TSS region transcription start site region 39210
Cpgi14913 4 129984244 to 129986595 2351 CpG island CpG island 14913
Tssr39211 4 129984783 to 129984788 5 + TSS region transcription start site region 39211
Tssr39212 4 129984809 to 129984821 12 + TSS region transcription start site region 39212
Tssr39213 4 129984833 to 129984876 43 + TSS region transcription start site region 39213
Adgrb2 4 129984870 to 130022633 37763 + protein coding gene adhesion G protein-coupled receptor B2
Tssr39214 4 129984893 to 129984896 3 + TSS region transcription start site region 39214
Tssr39215 4 129985098 to 129985154 56 + TSS region transcription start site region 39215
Cpgi14914 4 129987671 to 129988640 969 CpG island CpG island 14914
Cpgi14915 4 130006630 to 130006993 363 CpG island CpG island 14915
Tssr39216 4 130006735 to 130006754 19 + TSS region transcription start site region 39216
Cpgi14916 4 130007608 to 130007901 293 CpG island CpG island 14916
Gm12963 4 130024256 to 130047774 23518 - antisense lncRNA gene predicted gene 12963