Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129705596-130155596

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Khdrbs1 4 129703164 to 129742303 39139 - protein coding gene KH domain containing, RNA binding, signal transduction associated 1
Cpgi14907 4 129741256 to 129742978 1722 CpG island CpG island 14907
Tssr43561 4 129742180 to 129742189 9 - TSS region transcription start site region 43561
Tssr43562 4 129742233 to 129742268 35 - TSS region transcription start site region 43562
Tssr43563 4 129742275 to 129742312 37 - TSS region transcription start site region 43563
Gm12967 4 129761628 to 129761916 288 - pseudogene predicted gene 12967
Gm28017 4 129762311 to 129762436 125 - miRNA gene predicted gene, 28017
Tssr39181 4 129772545 to 129772566 21 + TSS region transcription start site region 39181
Tssr39182 4 129795715 to 129795747 32 + TSS region transcription start site region 39182
Cpgi14908 4 129810775 to 129811092 317 CpG island CpG island 14908
Tssr43564 4 129810908 to 129810919 11 - TSS region transcription start site region 43564
Tssr43565 4 129810973 to 129810987 14 - TSS region transcription start site region 43565
Tssr39183 4 129811183 to 129811207 24 + TSS region transcription start site region 39183
Tssr39184 4 129811213 to 129811259 46 + TSS region transcription start site region 39184
Tssr39185 4 129811643 to 129811684 41 + TSS region transcription start site region 39185
Tssr39186 4 129814623 to 129814629 6 + TSS region transcription start site region 39186
Cpgi14909 4 129819638 to 129821091 1453 CpG island CpG island 14909
Tssr43566 4 129819864 to 129819878 14 - TSS region transcription start site region 43566
Tssr43567 4 129819915 to 129819933 18 - TSS region transcription start site region 43567
Tssr39187 4 129820198 to 129820269 71 + TSS region transcription start site region 39187
Ptp4a2 4 129820204 to 129850003 29799 + protein coding gene protein tyrosine phosphatase 4a2
Tssr39188 4 129820285 to 129820292 7 + TSS region transcription start site region 39188
Tssr39189 4 129820304 to 129820311 7 + TSS region transcription start site region 39189
Tssr39190 4 129820673 to 129820685 12 + TSS region transcription start site region 39190
Tssr39191 4 129820702 to 129820709 7 + TSS region transcription start site region 39191
Tssr39192 4 129820721 to 129820786 65 + TSS region transcription start site region 39192
Tssr43568 4 129821172 to 129821210 38 - TSS region transcription start site region 43568
Tssr39193 4 129821237 to 129821262 25 + TSS region transcription start site region 39193
Tssr39194 4 129821445 to 129821459 14 + TSS region transcription start site region 39194
Tssr39195 4 129821547 to 129821563 16 + TSS region transcription start site region 39195
Tssr39196 4 129821565 to 129821620 55 + TSS region transcription start site region 39196
Tssr43569 4 129823327 to 129823348 21 - TSS region transcription start site region 43569
Tssr39197 4 129827297 to 129827301 4 + TSS region transcription start site region 39197
Tssr39198 4 129839162 to 129839166 4 + TSS region transcription start site region 39198
Tssr39199 4 129839239 to 129839269 30 + TSS region transcription start site region 39199
Tssr39200 4 129847846 to 129847870 24 + TSS region transcription start site region 39200
Tssr39201 4 129848452 to 129848476 24 + TSS region transcription start site region 39201
Tssr39202 4 129848505 to 129848515 10 + TSS region transcription start site region 39202
Tssr39203 4 129848693 to 129848705 12 + TSS region transcription start site region 39203
Tssr39204 4 129849166 to 129849187 21 + TSS region transcription start site region 39204
1700108I11Rik 4 129852503 to 129853676 1173 - lncRNA gene RIKEN cDNA 1700108I11 gene
Tssr43570 4 129853211 to 129853250 39 - TSS region transcription start site region 43570
Gm10571 4 129855071 to 129856710 1639 + pseudogene predicted gene 10571
Gm23845 4 129895573 to 129895724 151 + snRNA gene predicted gene, 23845
Cpgi14910 4 129898926 to 129899085 159 CpG island CpG island 14910
Tssr39205 4 129899042 to 129899048 6 + TSS region transcription start site region 39205
Gm12966 4 129899093 to 129899902 809 + pseudogene predicted gene 12966
Tssr39206 4 129906192 to 129906203 11 + TSS region transcription start site region 39206
Tssr39207 4 129906205 to 129906244 39 + TSS region transcription start site region 39207
E330017L17Rik 4 129906226 to 129908996 2770 + lincRNA gene RIKEN cDNA E330017L17 gene
Cpgi14911 4 129928507 to 129928718 211 CpG island CpG island 14911
Tssr39208 4 129928767 to 129928770 3 + TSS region transcription start site region 39208
Tssr39209 4 129928789 to 129928800 11 + TSS region transcription start site region 39209
Spocd1 4 129929249 to 129957115 27866 + protein coding gene SPOC domain containing 1
Albq19 4 129930596 to 129930596 0 QTL albuminuria QTL 19
Cpgi14912 4 129959895 to 129960797 902 CpG island CpG island 14912
1700003M07Rik 4 129960374 to 129963657 3283 + lincRNA gene RIKEN cDNA 1700003M07 gene
Tssr39210 4 129960760 to 129960781 21 + TSS region transcription start site region 39210
Cpgi14913 4 129984244 to 129986595 2351 CpG island CpG island 14913
Tssr39211 4 129984783 to 129984788 5 + TSS region transcription start site region 39211
Tssr39212 4 129984809 to 129984821 12 + TSS region transcription start site region 39212
Tssr39213 4 129984833 to 129984876 43 + TSS region transcription start site region 39213
Adgrb2 4 129984870 to 130022633 37763 + protein coding gene adhesion G protein-coupled receptor B2
Tssr39214 4 129984893 to 129984896 3 + TSS region transcription start site region 39214
Tssr39215 4 129985098 to 129985154 56 + TSS region transcription start site region 39215
Cpgi14914 4 129987671 to 129988640 969 CpG island CpG island 14914
Cpgi14915 4 130006630 to 130006993 363 CpG island CpG island 14915
Tssr39216 4 130006735 to 130006754 19 + TSS region transcription start site region 39216
Cpgi14916 4 130007608 to 130007901 293 CpG island CpG island 14916
Gm12963 4 130024256 to 130047774 23518 - antisense lncRNA gene predicted gene 12963
Cpgi14917 4 130036853 to 130037239 386 CpG island CpG island 14917
Cpgi14918 4 130045721 to 130045997 276 CpG island CpG island 14918
Cpgi14919 4 130047323 to 130048102 779 CpG island CpG island 14919
Tssr39217 4 130047360 to 130047389 29 + TSS region transcription start site region 39217
Tssr1308 4 130047546 to 130047599 53 + TSS region transcription start site region 1308
Col16a1 4 130047840 to 130099283 51443 + protein coding gene collagen, type XVI, alpha 1
Tssr39218 4 130047856 to 130047901 45 + TSS region transcription start site region 39218
Tssr39219 4 130047914 to 130047929 15 + TSS region transcription start site region 39219
Tssr39220 4 130050710 to 130050734 24 + TSS region transcription start site region 39220
Tssr39221 4 130050741 to 130050749 8 + TSS region transcription start site region 39221
Tssr39222 4 130055023 to 130055047 24 + TSS region transcription start site region 39222
Tssr39223 4 130055090 to 130055101 11 + TSS region transcription start site region 39223
Tssr39224 4 130055279 to 130055284 5 + TSS region transcription start site region 39224
Tssr1309 4 130055351 to 130055379 28 + TSS region transcription start site region 1309
Tssr39225 4 130056173 to 130056218 45 + TSS region transcription start site region 39225
Tssr39226 4 130056766 to 130056776 10 + TSS region transcription start site region 39226
Tssr39227 4 130061144 to 130061164 20 + TSS region transcription start site region 39227
Tssr39228 4 130061166 to 130061186 20 + TSS region transcription start site region 39228
Gm46871 4 130076240 to 130079510 3270 - lncRNA gene predicted gene, 46871
Tssr39229 4 130104886 to 130104904 18 + TSS region transcription start site region 39229
Gm40258 4 130105455 to 130108282 2827 - lncRNA gene predicted gene, 40258
Cpgi14920 4 130107258 to 130108067 809 CpG island CpG island 14920
Pef1 4 130107556 to 130128134 20578 + protein coding gene penta-EF hand domain containing 1
Tssr39230 4 130107600 to 130107606 6 + TSS region transcription start site region 39230
Tssr39231 4 130107609 to 130107620 11 + TSS region transcription start site region 39231
Tssr39232 4 130108404 to 130108407 3 + TSS region transcription start site region 39232
Tssr39233 4 130127676 to 130127697 21 + TSS region transcription start site region 39233
Hcrtr1 4 130130217 to 130139359 9142 - protein coding gene hypocretin (orexin) receptor 1
Cpgi14921 4 130138327 to 130139609 1282 CpG island CpG island 14921
Tssr43571 4 130139149 to 130139162 13 - TSS region transcription start site region 43571
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm40259 4 130143954 to 130148919 4965 + lncRNA gene predicted gene, 40259