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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129643042-132003047

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392 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kpna6 4 129643980 to 129672767 28787 - protein coding gene karyopherin (importin) alpha 6
Tssr43550 4 129647491 to 129647518 27 - TSS region transcription start site region 43550
Tssr39180 4 129650240 to 129650243 3 + TSS region transcription start site region 39180
Tssr43551 4 129662442 to 129662485 43 - TSS region transcription start site region 43551
Cpgi14905 4 129672097 to 129673101 1004 CpG island CpG island 14905
Tssr43552 4 129672697 to 129672708 11 - TSS region transcription start site region 43552
Tssr43553 4 129672712 to 129672774 62 - TSS region transcription start site region 43553
Tssr43554 4 129672782 to 129672793 11 - TSS region transcription start site region 43554
Tmem39b 4 129676355 to 129696838 20483 - protein coding gene transmembrane protein 39b
Mir7016 4 129684500 to 129684571 71 - miRNA gene microRNA 7016
Tssr43555 4 129684735 to 129684745 10 - TSS region transcription start site region 43555
Cpgi14906 4 129696249 to 129697174 925 CpG island CpG island 14906
Tssr43556 4 129696579 to 129696602 23 - TSS region transcription start site region 43556
Tssr43557 4 129696734 to 129696743 9 - TSS region transcription start site region 43557
Tssr43558 4 129696758 to 129696804 46 - TSS region transcription start site region 43558
Tssr43559 4 129696817 to 129696843 26 - TSS region transcription start site region 43559
Tssr43560 4 129696849 to 129696860 11 - TSS region transcription start site region 43560
Khdrbs1 4 129703164 to 129742303 39139 - protein coding gene KH domain containing, RNA binding, signal transduction associated 1
Cpgi14907 4 129741256 to 129742978 1722 CpG island CpG island 14907
Tssr43561 4 129742180 to 129742189 9 - TSS region transcription start site region 43561
Tssr43562 4 129742233 to 129742268 35 - TSS region transcription start site region 43562
Tssr43563 4 129742275 to 129742312 37 - TSS region transcription start site region 43563
Gm12967 4 129761628 to 129761916 288 - pseudogene predicted gene 12967
Gm28017 4 129762311 to 129762436 125 - miRNA gene predicted gene, 28017
Tssr39181 4 129772545 to 129772566 21 + TSS region transcription start site region 39181
Tssr39182 4 129795715 to 129795747 32 + TSS region transcription start site region 39182
Cpgi14908 4 129810775 to 129811092 317 CpG island CpG island 14908
Tssr43564 4 129810908 to 129810919 11 - TSS region transcription start site region 43564
Tssr43565 4 129810973 to 129810987 14 - TSS region transcription start site region 43565
Tssr39183 4 129811183 to 129811207 24 + TSS region transcription start site region 39183
Tssr39184 4 129811213 to 129811259 46 + TSS region transcription start site region 39184
Tssr39185 4 129811643 to 129811684 41 + TSS region transcription start site region 39185
Tssr39186 4 129814623 to 129814629 6 + TSS region transcription start site region 39186
Cpgi14909 4 129819638 to 129821091 1453 CpG island CpG island 14909
Tssr43566 4 129819864 to 129819878 14 - TSS region transcription start site region 43566
Tssr43567 4 129819915 to 129819933 18 - TSS region transcription start site region 43567
Tssr39187 4 129820198 to 129820269 71 + TSS region transcription start site region 39187
Ptp4a2 4 129820204 to 129850003 29799 + protein coding gene protein tyrosine phosphatase 4a2
Tssr39188 4 129820285 to 129820292 7 + TSS region transcription start site region 39188
Tssr39189 4 129820304 to 129820311 7 + TSS region transcription start site region 39189
Tssr39190 4 129820673 to 129820685 12 + TSS region transcription start site region 39190
Tssr39191 4 129820702 to 129820709 7 + TSS region transcription start site region 39191
Tssr39192 4 129820721 to 129820786 65 + TSS region transcription start site region 39192
Tssr43568 4 129821172 to 129821210 38 - TSS region transcription start site region 43568
Tssr39193 4 129821237 to 129821262 25 + TSS region transcription start site region 39193
Tssr39194 4 129821445 to 129821459 14 + TSS region transcription start site region 39194
Tssr39195 4 129821547 to 129821563 16 + TSS region transcription start site region 39195
Tssr39196 4 129821565 to 129821620 55 + TSS region transcription start site region 39196
Tssr43569 4 129823327 to 129823348 21 - TSS region transcription start site region 43569
Tssr39197 4 129827297 to 129827301 4 + TSS region transcription start site region 39197
Tssr39198 4 129839162 to 129839166 4 + TSS region transcription start site region 39198
Tssr39199 4 129839239 to 129839269 30 + TSS region transcription start site region 39199
Tssr39200 4 129847846 to 129847870 24 + TSS region transcription start site region 39200
Tssr39201 4 129848452 to 129848476 24 + TSS region transcription start site region 39201
Tssr39202 4 129848505 to 129848515 10 + TSS region transcription start site region 39202
Tssr39203 4 129848693 to 129848705 12 + TSS region transcription start site region 39203
Tssr39204 4 129849166 to 129849187 21 + TSS region transcription start site region 39204
1700108I11Rik 4 129852503 to 129853676 1173 - lncRNA gene RIKEN cDNA 1700108I11 gene
Tssr43570 4 129853211 to 129853250 39 - TSS region transcription start site region 43570
Gm10571 4 129855071 to 129856710 1639 + pseudogene predicted gene 10571
Gm23845 4 129895573 to 129895724 151 + snRNA gene predicted gene, 23845
Cpgi14910 4 129898926 to 129899085 159 CpG island CpG island 14910
Tssr39205 4 129899042 to 129899048 6 + TSS region transcription start site region 39205
Gm12966 4 129899093 to 129899902 809 + pseudogene predicted gene 12966
Tssr39206 4 129906192 to 129906203 11 + TSS region transcription start site region 39206
Tssr39207 4 129906205 to 129906244 39 + TSS region transcription start site region 39207
E330017L17Rik 4 129906226 to 129908996 2770 + lincRNA gene RIKEN cDNA E330017L17 gene
Cpgi14911 4 129928507 to 129928718 211 CpG island CpG island 14911
Tssr39208 4 129928767 to 129928770 3 + TSS region transcription start site region 39208
Tssr39209 4 129928789 to 129928800 11 + TSS region transcription start site region 39209
Spocd1 4 129929249 to 129957115 27866 + protein coding gene SPOC domain containing 1
Albq19 4 129930596 to 129930596 0 QTL albuminuria QTL 19
Cpgi14912 4 129959895 to 129960797 902 CpG island CpG island 14912
1700003M07Rik 4 129960374 to 129963657 3283 + lincRNA gene RIKEN cDNA 1700003M07 gene
Tssr39210 4 129960760 to 129960781 21 + TSS region transcription start site region 39210
Cpgi14913 4 129984244 to 129986595 2351 CpG island CpG island 14913
Tssr39211 4 129984783 to 129984788 5 + TSS region transcription start site region 39211
Tssr39212 4 129984809 to 129984821 12 + TSS region transcription start site region 39212
Tssr39213 4 129984833 to 129984876 43 + TSS region transcription start site region 39213
Adgrb2 4 129984870 to 130022633 37763 + protein coding gene adhesion G protein-coupled receptor B2
Tssr39214 4 129984893 to 129984896 3 + TSS region transcription start site region 39214
Tssr39215 4 129985098 to 129985154 56 + TSS region transcription start site region 39215
Cpgi14914 4 129987671 to 129988640 969 CpG island CpG island 14914
Cpgi14915 4 130006630 to 130006993 363 CpG island CpG island 14915
Tssr39216 4 130006735 to 130006754 19 + TSS region transcription start site region 39216
Cpgi14916 4 130007608 to 130007901 293 CpG island CpG island 14916
Gm12963 4 130024256 to 130047774 23518 - antisense lncRNA gene predicted gene 12963
Cpgi14917 4 130036853 to 130037239 386 CpG island CpG island 14917
Cpgi14918 4 130045721 to 130045997 276 CpG island CpG island 14918
Cpgi14919 4 130047323 to 130048102 779 CpG island CpG island 14919
Tssr39217 4 130047360 to 130047389 29 + TSS region transcription start site region 39217
Tssr1308 4 130047546 to 130047599 53 + TSS region transcription start site region 1308
Col16a1 4 130047840 to 130099283 51443 + protein coding gene collagen, type XVI, alpha 1
Tssr39218 4 130047856 to 130047901 45 + TSS region transcription start site region 39218
Tssr39219 4 130047914 to 130047929 15 + TSS region transcription start site region 39219
Tssr39220 4 130050710 to 130050734 24 + TSS region transcription start site region 39220
Tssr39221 4 130050741 to 130050749 8 + TSS region transcription start site region 39221
Tssr39222 4 130055023 to 130055047 24 + TSS region transcription start site region 39222
Tssr39223 4 130055090 to 130055101 11 + TSS region transcription start site region 39223
Tssr39224 4 130055279 to 130055284 5 + TSS region transcription start site region 39224
Tssr1309 4 130055351 to 130055379 28 + TSS region transcription start site region 1309
Tssr39225 4 130056173 to 130056218 45 + TSS region transcription start site region 39225
Tssr39226 4 130056766 to 130056776 10 + TSS region transcription start site region 39226
Tssr39227 4 130061144 to 130061164 20 + TSS region transcription start site region 39227
Tssr39228 4 130061166 to 130061186 20 + TSS region transcription start site region 39228
Gm46871 4 130076240 to 130079510 3270 - lncRNA gene predicted gene, 46871
Tssr39229 4 130104886 to 130104904 18 + TSS region transcription start site region 39229
Gm40258 4 130105455 to 130108282 2827 - lncRNA gene predicted gene, 40258
Cpgi14920 4 130107258 to 130108067 809 CpG island CpG island 14920
Pef1 4 130107556 to 130128134 20578 + protein coding gene penta-EF hand domain containing 1
Tssr39230 4 130107600 to 130107606 6 + TSS region transcription start site region 39230
Tssr39231 4 130107609 to 130107620 11 + TSS region transcription start site region 39231
Tssr39232 4 130108404 to 130108407 3 + TSS region transcription start site region 39232
Tssr39233 4 130127676 to 130127697 21 + TSS region transcription start site region 39233
Hcrtr1 4 130130217 to 130139359 9142 - protein coding gene hypocretin (orexin) receptor 1
Cpgi14921 4 130138327 to 130139609 1282 CpG island CpG island 14921
Tssr43571 4 130139149 to 130139162 13 - TSS region transcription start site region 43571
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Gm40259 4 130143954 to 130148919 4965 + lncRNA gene predicted gene, 40259
D4Mit309 4 130159472 to 130159596 124 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 309
Tinagl1 4 130165600 to 130175122 9522 - protein coding gene tubulointerstitial nephritis antigen-like 1
Cpgi14922 4 130165927 to 130166383 456 CpG island CpG island 14922
Cpgi14923 4 130167428 to 130167807 379 CpG island CpG island 14923
Tssr43572 4 130168054 to 130168058 4 - TSS region transcription start site region 43572
D4Mit281 4 130172113 to 130172215 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 281
Cpgi14924 4 130173911 to 130174162 251 CpG island CpG island 14924
Cpgi14925 4 130174706 to 130175123 417 CpG island CpG island 14925
Tssr43573 4 130174779 to 130174808 29 - TSS region transcription start site region 43573
Tssr43574 4 130175113 to 130175138 25 - TSS region transcription start site region 43574
Tssr43575 4 130177164 to 130177186 22 - TSS region transcription start site region 43575
Cpgi14926 4 130198973 to 130199575 602 CpG island CpG island 14926
Gm853 4 130209109 to 130222401 13292 - protein coding gene predicted gene 853
Tssr43576 4 130222326 to 130222349 23 - TSS region transcription start site region 43576
Gm46724 4 130236579 to 130249079 12500 + lncRNA gene predicted gene, 46724
Serinc2 4 130253495 to 130279200 25705 - protein coding gene serine incorporator 2
Cpgi14927 4 130264771 to 130265050 279 CpG island CpG island 14927
Cpgi14928 4 130274830 to 130275838 1008 CpG island CpG island 14928
Tssr43577 4 130275199 to 130275210 11 - TSS region transcription start site region 43577
Tssr43578 4 130275213 to 130275228 15 - TSS region transcription start site region 43578
Tssr43579 4 130275523 to 130275537 14 - TSS region transcription start site region 43579
Tssr43580 4 130275542 to 130275590 48 - TSS region transcription start site region 43580
Gm34957 4 130275656 to 130280859 5203 + lncRNA gene predicted gene, 34957
Tssr43581 4 130279217 to 130279231 14 - TSS region transcription start site region 43581
Tssr1310 4 130295432 to 130295436 4 - TSS region transcription start site region 1310
Tssr43582 4 130307509 to 130307519 10 - TSS region transcription start site region 43582
Cpgi14929 4 130307783 to 130309205 1422 CpG island CpG island 14929
Gm10570 4 130308162 to 130308674 512 - unclassified gene predicted gene 10570
Tssr39234 4 130308604 to 130308653 49 + TSS region transcription start site region 39234
Tssr39235 4 130308731 to 130308752 21 + TSS region transcription start site region 39235
Fabp3 4 130308778 to 130315463 6685 + protein coding gene fatty acid binding protein 3, muscle and heart
Zcchc17 4 130315902 to 130359963 44061 - protein coding gene zinc finger, CCHC domain containing 17
Gm35074 4 130317693 to 130333346 15653 + lncRNA gene predicted gene, 35074
Tssr43583 4 130334898 to 130334902 4 - TSS region transcription start site region 43583
Cpgi14930 4 130359665 to 130360522 857 CpG island CpG island 14930
Tssr43584 4 130359915 to 130359966 51 - TSS region transcription start site region 43584
Snrnp40 4 130360132 to 130390026 29894 + protein coding gene small nuclear ribonucleoprotein 40 (U5)
Tssr39236 4 130360159 to 130360208 49 + TSS region transcription start site region 39236
Tssr39237 4 130366858 to 130366865 7 + TSS region transcription start site region 39237
2900017G11Rik 4 130379909 to 130380784 875 unclassified gene RIKEN cDNA 2900017G11 gene
Tssr43585 4 130519663 to 130519682 19 - TSS region transcription start site region 43585
Tssr43586 4 130519833 to 130519844 11 - TSS region transcription start site region 43586
Cpgi14933 4 130519890 to 130520557 667 CpG island CpG island 14933
Tssr43587 4 130519977 to 130519983 6 - TSS region transcription start site region 43587
Tssr43588 4 130520006 to 130520023 17 - TSS region transcription start site region 43588
Tssr43589 4 130520110 to 130520133 23 - TSS region transcription start site region 43589
Tssr43590 4 130520184 to 130520207 23 - TSS region transcription start site region 43590
Tssr43591 4 130520213 to 130520224 11 - TSS region transcription start site region 43591
Tssr43592 4 130520243 to 130520263 20 - TSS region transcription start site region 43592
Tssr1311 4 130520508 to 130520556 48 + TSS region transcription start site region 1311
Tssr39238 4 130520730 to 130520749 19 + TSS region transcription start site region 39238
Tssr43593 4 130525187 to 130525197 10 - TSS region transcription start site region 43593
Nkain1 4 130531602 to 130574173 42571 - protein coding gene Na+/K+ transporting ATPase interacting 1
Tssr43594 4 130531656 to 130531669 13 - TSS region transcription start site region 43594
Cpgi14932 4 130531749 to 130532285 536 CpG island CpG island 14932
Tssr43595 4 130548383 to 130548388 5 - TSS region transcription start site region 43595
Tssr1312 4 130549288 to 130549291 3 - TSS region transcription start site region 1312
1500006G06Rik 4 130572295 to 130573052 757 unclassified gene RIKEN cDNA 1500006G06 gene
Cpgi14931 4 130572995 to 130574482 1487 CpG island CpG island 14931
Tssr43596 4 130574124 to 130574144 20 - TSS region transcription start site region 43596
Tssr43597 4 130574150 to 130574237 87 - TSS region transcription start site region 43597
Cpgi14934 4 130662787 to 130664252 1465 CpG island CpG island 14934
Tssr39239 4 130663212 to 130663224 12 + TSS region transcription start site region 39239
Tssr39240 4 130663277 to 130663294 17 + TSS region transcription start site region 39240
Pum1 4 130663321 to 130781564 118243 + protein coding gene pumilio RNA-binding family member 1
Tssr39241 4 130663353 to 130663412 59 + TSS region transcription start site region 39241
Tssr39242 4 130663417 to 130663420 3 + TSS region transcription start site region 39242
Tssr1313 4 130663674 to 130663701 27 + TSS region transcription start site region 1313
Tssr39243 4 130663802 to 130663805 3 + TSS region transcription start site region 39243
Tssr39244 4 130670202 to 130670206 4 + TSS region transcription start site region 39244
Tssr39245 4 130680861 to 130680865 4 + TSS region transcription start site region 39245
Tssr39246 4 130681245 to 130681247 2 + TSS region transcription start site region 39246
2810017D21Rik 4 130709671 to 130710489 818 unclassified gene RIKEN cDNA 2810017D21 gene
Tssr39247 4 130709696 to 130709703 7 + TSS region transcription start site region 39247
Tssr39248 4 130727640 to 130727644 4 + TSS region transcription start site region 39248
Snord85 4 130749638 to 130749702 64 + snoRNA gene small nucleolar RNA, C/D box 85
Gm12971 4 130758563 to 130762379 3816 + sense intronic lncRNA gene predicted gene 12971
Gm24091 4 130766331 to 130766413 82 + snoRNA gene predicted gene, 24091
Gm26516 4 130774817 to 130779246 4429 - lincRNA gene predicted gene, 26516
Gm23711 4 130775741 to 130775823 82 + snoRNA gene predicted gene, 23711
Tssr39249 4 130783733 to 130783734 1 + TSS region transcription start site region 39249