Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129613164-129832303

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dcdc2b 4 129608331 to 129614257 5926 - protein coding gene doublecortin domain containing 2b
Tssr43540 4 129614261 to 129614280 19 - TSS region transcription start site region 43540
Iqcc 4 129615617 to 129619107 3490 - protein coding gene IQ motif containing C
Cpgi14903 4 129618786 to 129619480 694 CpG island CpG island 14903
Tssr43541 4 129619052 to 129619063 11 - TSS region transcription start site region 43541
Tssr43542 4 129619069 to 129619118 49 - TSS region transcription start site region 43542
Ccdc28b 4 129619274 to 129623908 4634 - protein coding gene coiled coil domain containing 28B
Tssr43543 4 129621392 to 129621427 35 - TSS region transcription start site region 43543
Tssr43544 4 129622945 to 129622952 7 - TSS region transcription start site region 43544
Gm34305 4 129623106 to 129624060 954 + lncRNA gene predicted gene, 34305
Tssr43545 4 129623870 to 129623925 55 - TSS region transcription start site region 43545
2810452K05Rik 4 129624253 to 129625071 818 unclassified gene RIKEN cDNA 2810452K05 gene
Txlna 4 129626078 to 129641065 14987 - protein coding gene taxilin alpha
Tgq17 4 129629696 to 129629696 0 QTL triglyceride QTL 17
Cpgi14904 4 129640509 to 129641243 734 CpG island CpG island 14904
Tssr43546 4 129640614 to 129640660 46 - TSS region transcription start site region 43546
Tssr43547 4 129640691 to 129640725 34 - TSS region transcription start site region 43547
Tssr1307 4 129640967 to 129640978 11 - TSS region transcription start site region 1307
Tssr43548 4 129640991 to 129641051 60 - TSS region transcription start site region 43548
Tssr43549 4 129641060 to 129641080 20 - TSS region transcription start site region 43549
Kpna6 4 129643980 to 129672767 28787 - protein coding gene karyopherin (importin) alpha 6
Tssr43550 4 129647491 to 129647518 27 - TSS region transcription start site region 43550
Tssr39180 4 129650240 to 129650243 3 + TSS region transcription start site region 39180
Tssr43551 4 129662442 to 129662485 43 - TSS region transcription start site region 43551
Cpgi14905 4 129672097 to 129673101 1004 CpG island CpG island 14905
Tssr43552 4 129672697 to 129672708 11 - TSS region transcription start site region 43552
Tssr43553 4 129672712 to 129672774 62 - TSS region transcription start site region 43553
Tssr43554 4 129672782 to 129672793 11 - TSS region transcription start site region 43554
Tmem39b 4 129676355 to 129696838 20483 - protein coding gene transmembrane protein 39b
Mir7016 4 129684500 to 129684571 71 - miRNA gene microRNA 7016
Tssr43555 4 129684735 to 129684745 10 - TSS region transcription start site region 43555
Cpgi14906 4 129696249 to 129697174 925 CpG island CpG island 14906
Tssr43556 4 129696579 to 129696602 23 - TSS region transcription start site region 43556
Tssr43557 4 129696734 to 129696743 9 - TSS region transcription start site region 43557
Tssr43558 4 129696758 to 129696804 46 - TSS region transcription start site region 43558
Tssr43559 4 129696817 to 129696843 26 - TSS region transcription start site region 43559
Tssr43560 4 129696849 to 129696860 11 - TSS region transcription start site region 43560
Khdrbs1 4 129703164 to 129742303 39139 - protein coding gene KH domain containing, RNA binding, signal transduction associated 1
Cpgi14907 4 129741256 to 129742978 1722 CpG island CpG island 14907
Tssr43561 4 129742180 to 129742189 9 - TSS region transcription start site region 43561
Tssr43562 4 129742233 to 129742268 35 - TSS region transcription start site region 43562
Tssr43563 4 129742275 to 129742312 37 - TSS region transcription start site region 43563
Gm12967 4 129761628 to 129761916 288 - pseudogene predicted gene 12967
Gm28017 4 129762311 to 129762436 125 - miRNA gene predicted gene, 28017
Tssr39181 4 129772545 to 129772566 21 + TSS region transcription start site region 39181
Tssr39182 4 129795715 to 129795747 32 + TSS region transcription start site region 39182
Cpgi14908 4 129810775 to 129811092 317 CpG island CpG island 14908
Tssr43564 4 129810908 to 129810919 11 - TSS region transcription start site region 43564
Tssr43565 4 129810973 to 129810987 14 - TSS region transcription start site region 43565
Tssr39183 4 129811183 to 129811207 24 + TSS region transcription start site region 39183
Tssr39184 4 129811213 to 129811259 46 + TSS region transcription start site region 39184
Tssr39185 4 129811643 to 129811684 41 + TSS region transcription start site region 39185
Tssr39186 4 129814623 to 129814629 6 + TSS region transcription start site region 39186
Cpgi14909 4 129819638 to 129821091 1453 CpG island CpG island 14909
Tssr43566 4 129819864 to 129819878 14 - TSS region transcription start site region 43566
Tssr43567 4 129819915 to 129819933 18 - TSS region transcription start site region 43567
Tssr39187 4 129820198 to 129820269 71 + TSS region transcription start site region 39187
Ptp4a2 4 129820204 to 129850003 29799 + protein coding gene protein tyrosine phosphatase 4a2
Tssr39188 4 129820285 to 129820292 7 + TSS region transcription start site region 39188
Tssr39189 4 129820304 to 129820311 7 + TSS region transcription start site region 39189
Tssr39190 4 129820673 to 129820685 12 + TSS region transcription start site region 39190
Tssr39191 4 129820702 to 129820709 7 + TSS region transcription start site region 39191
Tssr39192 4 129820721 to 129820786 65 + TSS region transcription start site region 39192
Tssr43568 4 129821172 to 129821210 38 - TSS region transcription start site region 43568
Tssr39193 4 129821237 to 129821262 25 + TSS region transcription start site region 39193
Tssr39194 4 129821445 to 129821459 14 + TSS region transcription start site region 39194
Tssr39195 4 129821547 to 129821563 16 + TSS region transcription start site region 39195
Tssr39196 4 129821565 to 129821620 55 + TSS region transcription start site region 39196
Tssr43569 4 129823327 to 129823348 21 - TSS region transcription start site region 43569
Tssr39197 4 129827297 to 129827301 4 + TSS region transcription start site region 39197