Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129472018-137237225

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1841 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Nidds 4 115173580 to 129572122 14398542 QTL non-insulin-dependent diabetes mellitus in SJL
Bsdc1 4 129461679 to 129488498 26819 + protein coding gene BSD domain containing 1
Tssr39151 4 129474068 to 129474084 16 + TSS region transcription start site region 39151
Tssr39152 4 129487087 to 129487098 11 + TSS region transcription start site region 39152
Tssr39153 4 129487158 to 129487172 14 + TSS region transcription start site region 39153
Tssk3 4 129489008 to 129490770 1762 - protein coding gene testis-specific serine kinase 3
Tssr43503 4 129490760 to 129490776 16 - TSS region transcription start site region 43503
Tssr39154 4 129490860 to 129490878 18 + TSS region transcription start site region 39154
Cpgi14894 4 129490930 to 129492020 1090 CpG island CpG island 14894
Tssr43504 4 129491059 to 129491060 1 - TSS region transcription start site region 43504
Tssr43505 4 129491085 to 129491095 10 - TSS region transcription start site region 43505
Tssr43506 4 129491108 to 129491119 11 - TSS region transcription start site region 43506
Tssr43507 4 129491130 to 129491131 1 - TSS region transcription start site region 43507
Fam229a 4 129491190 to 129491956 766 + protein coding gene family with sequence similarity 229, member A
Tssr39155 4 129491192 to 129491220 28 + TSS region transcription start site region 39155
Tssr39156 4 129491231 to 129491246 15 + TSS region transcription start site region 39156
Tssr1306 4 129491266 to 129491274 8 + TSS region transcription start site region 1306
Tssr39157 4 129491293 to 129491300 7 + TSS region transcription start site region 39157
Gm12979 4 129491969 to 129509746 17777 - antisense lncRNA gene predicted gene 12979
Cpgi14895 4 129500518 to 129501037 519 CpG island CpG island 14895
Tssr43508 4 129500770 to 129500784 14 - TSS region transcription start site region 43508
Tssr43509 4 129500799 to 129500838 39 - TSS region transcription start site region 43509
Tssr39158 4 129512494 to 129512520 26 + TSS region transcription start site region 39158
Tssr39159 4 129512551 to 129512567 16 + TSS region transcription start site region 39159
Cpgi14896 4 129513269 to 129514794 1525 CpG island CpG island 14896
Tssr39160 4 129513397 to 129513409 12 + TSS region transcription start site region 39160
Tssr39161 4 129513432 to 129513444 12 + TSS region transcription start site region 39161
Marcksl1 4 129513581 to 129515981 2400 + protein coding gene MARCKS-like 1
Tssr39162 4 129513624 to 129513644 20 + TSS region transcription start site region 39162
Tssr39163 4 129514757 to 129514774 17 + TSS region transcription start site region 39163
Tssr39164 4 129514964 to 129514981 17 + TSS region transcription start site region 39164
Tssr39165 4 129515135 to 129515180 45 + TSS region transcription start site region 39165
Tssr39166 4 129515340 to 129515350 10 + TSS region transcription start site region 39166
Tssr39167 4 129515496 to 129515508 12 + TSS region transcription start site region 39167
Tssr39168 4 129515590 to 129515605 15 + TSS region transcription start site region 39168
Tssr39169 4 129515619 to 129515642 23 + TSS region transcription start site region 39169
Tssr39170 4 129515684 to 129515689 5 + TSS region transcription start site region 39170
Tssr39171 4 129515805 to 129515844 39 + TSS region transcription start site region 39171
Tssr39172 4 129515875 to 129515912 37 + TSS region transcription start site region 39172
Hdac1 4 129516104 to 129542646 26542 - protein coding gene histone deacetylase 1
Cpgi14897 4 129541934 to 129542117 183 CpG island CpG island 14897
Cpgi14898 4 129542300 to 129543068 768 CpG island CpG island 14898
Tssr43510 4 129542674 to 129542707 33 - TSS region transcription start site region 43510
Tssr43511 4 129542710 to 129542727 17 - TSS region transcription start site region 43511
Lck 4 129548344 to 129573641 25297 - protein coding gene lymphocyte protein tyrosine kinase
Tssr43512 4 129550796 to 129550801 5 - TSS region transcription start site region 43512
Cpgi14899 4 129555488 to 129555752 264 CpG island CpG island 14899
Tssr43513 4 129555784 to 129555815 31 - TSS region transcription start site region 43513
Cpgi14900 4 129556136 to 129556764 628 CpG island CpG island 14900
Tssr43514 4 129556475 to 129556549 74 - TSS region transcription start site region 43514
Tssr39173 4 129556636 to 129556659 23 + TSS region transcription start site region 39173
Tssr39174 4 129556812 to 129556816 4 + TSS region transcription start site region 39174
Mir8119 4 129557683 to 129557811 128 - miRNA gene microRNA 8119
Tssr43515 4 129558253 to 129558258 5 - TSS region transcription start site region 43515
Tssr43516 4 129558334 to 129558345 11 - TSS region transcription start site region 43516
Tssr43517 4 129558355 to 129558378 23 - TSS region transcription start site region 43517
Tssr43518 4 129558387 to 129558398 11 - TSS region transcription start site region 43518
Tssr43519 4 129558749 to 129558760 11 - TSS region transcription start site region 43519
Tssr43520 4 129558776 to 129558792 16 - TSS region transcription start site region 43520
Tssr43521 4 129558808 to 129558821 13 - TSS region transcription start site region 43521
Tssr43522 4 129558830 to 129558841 11 - TSS region transcription start site region 43522
Tssr39175 4 129570264 to 129570306 42 + TSS region transcription start site region 39175
Tlsr3 4 129572018 to 137137225 7565207 QTL thymic lymphoma suppressor region 3
D4Mit203 4 129572018 to 129572122 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 203
Lrdg2 4 129572018 to 151570093 21998075 QTL light induced retinal degeneration 2
Tssr43523 4 129572375 to 129572385 10 - TSS region transcription start site region 43523
Tssr43524 4 129572410 to 129572416 6 - TSS region transcription start site region 43524
Tssr39176 4 129572569 to 129572587 18 + TSS region transcription start site region 39176
Tssr43525 4 129573570 to 129573598 28 - TSS region transcription start site region 43525
Tssr43526 4 129573599 to 129573629 30 - TSS region transcription start site region 43526
Tssr43527 4 129573637 to 129573652 15 - TSS region transcription start site region 43527
Tssr39177 4 129573757 to 129573768 11 + TSS region transcription start site region 39177
Tssr43528 4 129575196 to 129575201 5 - TSS region transcription start site region 43528
Tssr43529 4 129575286 to 129575297 11 - TSS region transcription start site region 43529
Tssr43530 4 129575345 to 129575352 7 - TSS region transcription start site region 43530
Tssr43531 4 129575388 to 129575401 13 - TSS region transcription start site region 43531
Tssr39178 4 129575635 to 129575651 16 + TSS region transcription start site region 39178
Fam167b 4 129576815 to 129578549 1734 - protein coding gene family with sequence similarity 167, member B
Tssr43532 4 129578512 to 129578517 5 - TSS region transcription start site region 43532
Tssr43533 4 129578521 to 129578532 11 - TSS region transcription start site region 43533
Tssr43534 4 129578535 to 129578560 25 - TSS region transcription start site region 43534
Cpgi14901 4 129584907 to 129585454 547 CpG island CpG island 14901
Eif3i 4 129591974 to 129600648 8674 - protein coding gene eukaryotic translation initiation factor 3, subunit I
Tssr43535 4 129595109 to 129595113 4 - TSS region transcription start site region 43535
Tssr43536 4 129595168 to 129595193 25 - TSS region transcription start site region 43536
Cpgi14902 4 129600117 to 129601193 1076 CpG island CpG island 14902
Tssr43537 4 129600586 to 129600595 9 - TSS region transcription start site region 43537
Tssr43538 4 129600608 to 129600639 31 - TSS region transcription start site region 43538
Tssr43539 4 129600642 to 129600653 11 - TSS region transcription start site region 43539
Tssr39179 4 129600670 to 129600715 45 + TSS region transcription start site region 39179
Tmem234 4 129600691 to 129608533 7842 + protein coding gene transmembrane protein 234
Dcdc2b 4 129608331 to 129614257 5926 - protein coding gene doublecortin domain containing 2b
Tssr43540 4 129614261 to 129614280 19 - TSS region transcription start site region 43540
Iqcc 4 129615617 to 129619107 3490 - protein coding gene IQ motif containing C
Cpgi14903 4 129618786 to 129619480 694 CpG island CpG island 14903
Tssr43541 4 129619052 to 129619063 11 - TSS region transcription start site region 43541
Tssr43542 4 129619069 to 129619118 49 - TSS region transcription start site region 43542
Ccdc28b 4 129619274 to 129623908 4634 - protein coding gene coiled coil domain containing 28B
Tssr43543 4 129621392 to 129621427 35 - TSS region transcription start site region 43543
Tssr43544 4 129622945 to 129622952 7 - TSS region transcription start site region 43544
Gm34305 4 129623106 to 129624060 954 + lncRNA gene predicted gene, 34305
Tssr43545 4 129623870 to 129623925 55 - TSS region transcription start site region 43545
2810452K05Rik 4 129624253 to 129625071 818 unclassified gene RIKEN cDNA 2810452K05 gene
Txlna 4 129626078 to 129641065 14987 - protein coding gene taxilin alpha
Tgq17 4 129629696 to 129629696 0 QTL triglyceride QTL 17
Cpgi14904 4 129640509 to 129641243 734 CpG island CpG island 14904
Tssr43546 4 129640614 to 129640660 46 - TSS region transcription start site region 43546
Tssr43547 4 129640691 to 129640725 34 - TSS region transcription start site region 43547
Tssr1307 4 129640967 to 129640978 11 - TSS region transcription start site region 1307
Tssr43548 4 129640991 to 129641051 60 - TSS region transcription start site region 43548
Tssr43549 4 129641060 to 129641080 20 - TSS region transcription start site region 43549
Kpna6 4 129643980 to 129672767 28787 - protein coding gene karyopherin (importin) alpha 6
Tssr43550 4 129647491 to 129647518 27 - TSS region transcription start site region 43550
Tssr39180 4 129650240 to 129650243 3 + TSS region transcription start site region 39180
Tssr43551 4 129662442 to 129662485 43 - TSS region transcription start site region 43551
Cpgi14905 4 129672097 to 129673101 1004 CpG island CpG island 14905
Tssr43552 4 129672697 to 129672708 11 - TSS region transcription start site region 43552
Tssr43553 4 129672712 to 129672774 62 - TSS region transcription start site region 43553
Tssr43554 4 129672782 to 129672793 11 - TSS region transcription start site region 43554
Tmem39b 4 129676355 to 129696838 20483 - protein coding gene transmembrane protein 39b
Mir7016 4 129684500 to 129684571 71 - miRNA gene microRNA 7016
Tssr43555 4 129684735 to 129684745 10 - TSS region transcription start site region 43555
Cpgi14906 4 129696249 to 129697174 925 CpG island CpG island 14906
Tssr43556 4 129696579 to 129696602 23 - TSS region transcription start site region 43556
Tssr43557 4 129696734 to 129696743 9 - TSS region transcription start site region 43557
Tssr43558 4 129696758 to 129696804 46 - TSS region transcription start site region 43558
Tssr43559 4 129696817 to 129696843 26 - TSS region transcription start site region 43559
Tssr43560 4 129696849 to 129696860 11 - TSS region transcription start site region 43560
Khdrbs1 4 129703164 to 129742303 39139 - protein coding gene KH domain containing, RNA binding, signal transduction associated 1
Cpgi14907 4 129741256 to 129742978 1722 CpG island CpG island 14907
Tssr43561 4 129742180 to 129742189 9 - TSS region transcription start site region 43561
Tssr43562 4 129742233 to 129742268 35 - TSS region transcription start site region 43562
Tssr43563 4 129742275 to 129742312 37 - TSS region transcription start site region 43563
Gm12967 4 129761628 to 129761916 288 - pseudogene predicted gene 12967
Gm28017 4 129762311 to 129762436 125 - miRNA gene predicted gene, 28017
Tssr39181 4 129772545 to 129772566 21 + TSS region transcription start site region 39181
Tssr39182 4 129795715 to 129795747 32 + TSS region transcription start site region 39182
Cpgi14908 4 129810775 to 129811092 317 CpG island CpG island 14908
Tssr43564 4 129810908 to 129810919 11 - TSS region transcription start site region 43564
Tssr43565 4 129810973 to 129810987 14 - TSS region transcription start site region 43565
Tssr39183 4 129811183 to 129811207 24 + TSS region transcription start site region 39183
Tssr39184 4 129811213 to 129811259 46 + TSS region transcription start site region 39184
Tssr39185 4 129811643 to 129811684 41 + TSS region transcription start site region 39185
Tssr39186 4 129814623 to 129814629 6 + TSS region transcription start site region 39186
Cpgi14909 4 129819638 to 129821091 1453 CpG island CpG island 14909
Tssr43566 4 129819864 to 129819878 14 - TSS region transcription start site region 43566
Tssr43567 4 129819915 to 129819933 18 - TSS region transcription start site region 43567
Tssr39187 4 129820198 to 129820269 71 + TSS region transcription start site region 39187
Ptp4a2 4 129820204 to 129850003 29799 + protein coding gene protein tyrosine phosphatase 4a2
Tssr39188 4 129820285 to 129820292 7 + TSS region transcription start site region 39188
Tssr39189 4 129820304 to 129820311 7 + TSS region transcription start site region 39189
Tssr39190 4 129820673 to 129820685 12 + TSS region transcription start site region 39190
Tssr39191 4 129820702 to 129820709 7 + TSS region transcription start site region 39191
Tssr39192 4 129820721 to 129820786 65 + TSS region transcription start site region 39192
Tssr43568 4 129821172 to 129821210 38 - TSS region transcription start site region 43568
Tssr39193 4 129821237 to 129821262 25 + TSS region transcription start site region 39193
Tssr39194 4 129821445 to 129821459 14 + TSS region transcription start site region 39194
Tssr39195 4 129821547 to 129821563 16 + TSS region transcription start site region 39195
Tssr39196 4 129821565 to 129821620 55 + TSS region transcription start site region 39196
Tssr43569 4 129823327 to 129823348 21 - TSS region transcription start site region 43569
Tssr39197 4 129827297 to 129827301 4 + TSS region transcription start site region 39197
Tssr39198 4 129839162 to 129839166 4 + TSS region transcription start site region 39198
Tssr39199 4 129839239 to 129839269 30 + TSS region transcription start site region 39199
Tssr39200 4 129847846 to 129847870 24 + TSS region transcription start site region 39200
Tssr39201 4 129848452 to 129848476 24 + TSS region transcription start site region 39201
Tssr39202 4 129848505 to 129848515 10 + TSS region transcription start site region 39202
Tssr39203 4 129848693 to 129848705 12 + TSS region transcription start site region 39203
Tssr39204 4 129849166 to 129849187 21 + TSS region transcription start site region 39204
1700108I11Rik 4 129852503 to 129853676 1173 - lncRNA gene RIKEN cDNA 1700108I11 gene
Tssr43570 4 129853211 to 129853250 39 - TSS region transcription start site region 43570
Gm10571 4 129855071 to 129856710 1639 + pseudogene predicted gene 10571
Gm23845 4 129895573 to 129895724 151 + snRNA gene predicted gene, 23845
Cpgi14910 4 129898926 to 129899085 159 CpG island CpG island 14910
Tssr39205 4 129899042 to 129899048 6 + TSS region transcription start site region 39205
Gm12966 4 129899093 to 129899902 809 + pseudogene predicted gene 12966
Tssr39206 4 129906192 to 129906203 11 + TSS region transcription start site region 39206
Tssr39207 4 129906205 to 129906244 39 + TSS region transcription start site region 39207
E330017L17Rik 4 129906226 to 129908996 2770 + lincRNA gene RIKEN cDNA E330017L17 gene
Cpgi14911 4 129928507 to 129928718 211 CpG island CpG island 14911
Tssr39208 4 129928767 to 129928770 3 + TSS region transcription start site region 39208
Tssr39209 4 129928789 to 129928800 11 + TSS region transcription start site region 39209
Spocd1 4 129929249 to 129957115 27866 + protein coding gene SPOC domain containing 1
Albq19 4 129930596 to 129930596 0 QTL albuminuria QTL 19
Cpgi14912 4 129959895 to 129960797 902 CpG island CpG island 14912
1700003M07Rik 4 129960374 to 129963657 3283 + lincRNA gene RIKEN cDNA 1700003M07 gene
Tssr39210 4 129960760 to 129960781 21 + TSS region transcription start site region 39210
Cpgi14913 4 129984244 to 129986595 2351 CpG island CpG island 14913
Tssr39211 4 129984783 to 129984788 5 + TSS region transcription start site region 39211
Tssr39212 4 129984809 to 129984821 12 + TSS region transcription start site region 39212
Tssr39213 4 129984833 to 129984876 43 + TSS region transcription start site region 39213
Adgrb2 4 129984870 to 130022633 37763 + protein coding gene adhesion G protein-coupled receptor B2
Tssr39214 4 129984893 to 129984896 3 + TSS region transcription start site region 39214
Tssr39215 4 129985098 to 129985154 56 + TSS region transcription start site region 39215
Cpgi14914 4 129987671 to 129988640 969 CpG island CpG island 14914
Cpgi14915 4 130006630 to 130006993 363 CpG island CpG island 14915
Tssr39216 4 130006735 to 130006754 19 + TSS region transcription start site region 39216
Cpgi14916 4 130007608 to 130007901 293 CpG island CpG island 14916
Gm12963 4 130024256 to 130047774 23518 - antisense lncRNA gene predicted gene 12963
Cpgi14917 4 130036853 to 130037239 386 CpG island CpG island 14917