Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129306130-129676131

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidds 4 115173580 to 129572122 14398542 QTL non-insulin-dependent diabetes mellitus in SJL
Sync 4 129287617 to 129308559 20942 + protein coding gene syncoilin
Rbbp4 4 129307100 to 129335370 28270 - protein coding gene retinoblastoma binding protein 4, chromatin remodeling factor
Tssr39138 4 129308413 to 129308418 5 + TSS region transcription start site region 39138
Gm26722 4 129309081 to 129318443 9362 + lincRNA gene predicted gene, 26722
Tssr43491 4 129309872 to 129309886 14 - TSS region transcription start site region 43491
Tssr39139 4 129312574 to 129312578 4 + TSS region transcription start site region 39139
Tssr39140 4 129327184 to 129327189 5 + TSS region transcription start site region 39140
Cpgi14889 4 129334606 to 129336004 1398 CpG island CpG island 14889
Tssr43492 4 129335243 to 129335264 21 - TSS region transcription start site region 43492
Tssr43493 4 129335297 to 129335317 20 - TSS region transcription start site region 43493
Tssr43494 4 129335324 to 129335377 53 - TSS region transcription start site region 43494
Zbtb8os 4 129335592 to 129347083 11491 + protein coding gene zinc finger and BTB domain containing 8 opposite strand
Tssr39141 4 129335593 to 129335645 52 + TSS region transcription start site region 39141
Tssr39142 4 129335962 to 129335987 25 + TSS region transcription start site region 39142
Tssr39143 4 129336016 to 129336041 25 + TSS region transcription start site region 39143
Zbtb8a 4 129353632 to 129378028 24396 - protein coding gene zinc finger and BTB domain containing 8a
Tssr43495 4 129374285 to 129374327 42 - TSS region transcription start site region 43495
Tssr39144 4 129375328 to 129375346 18 + TSS region transcription start site region 39144
Tssr43496 4 129376012 to 129376026 14 - TSS region transcription start site region 43496
Cpgi14890 4 129376829 to 129378079 1250 CpG island CpG island 14890
Tssr43497 4 129377826 to 129377838 12 - TSS region transcription start site region 43497
Tssr43498 4 129377847 to 129377924 77 - TSS region transcription start site region 43498
Tssr43499 4 129377933 to 129377950 17 - TSS region transcription start site region 43499
Tssr43500 4 129378996 to 129379006 10 - TSS region transcription start site region 43500
Gm12980 4 129379844 to 129380179 335 + pseudogene predicted gene 12980
Tssr39145 4 129381415 to 129381438 23 + TSS region transcription start site region 39145
C330020E22Rik 4 129382546 to 129407475 24929 + lncRNA gene RIKEN cDNA C330020E22 gene
Tssr39146 4 129382685 to 129382706 21 + TSS region transcription start site region 39146
Tssr39147 4 129382721 to 129382767 46 + TSS region transcription start site region 39147
Cpgi14891 4 129406491 to 129406825 334 CpG island CpG island 14891
Zbtb8b 4 129425765 to 129440853 15088 - protein coding gene zinc finger and BTB domain containing 8b
Cpgi14892 4 129440541 to 129440871 330 CpG island CpG island 14892
Tssr43501 4 129440800 to 129440823 23 - TSS region transcription start site region 43501
Tssr43502 4 129446966 to 129446971 5 - TSS region transcription start site region 43502
Tssr39148 4 129458350 to 129458351 1 + TSS region transcription start site region 39148
Gm24621 4 129458351 to 129458490 139 + snRNA gene predicted gene, 24621
4921504P20Rik 4 129460171 to 129461523 1352 unclassified gene RIKEN cDNA 4921504P20 gene
Cpgi14893 4 129461336 to 129462066 730 CpG island CpG island 14893
Tssr39149 4 129461661 to 129461689 28 + TSS region transcription start site region 39149
Bsdc1 4 129461679 to 129488498 26819 + protein coding gene BSD domain containing 1
Tssr39150 4 129464538 to 129464550 12 + TSS region transcription start site region 39150
Tssr39151 4 129474068 to 129474084 16 + TSS region transcription start site region 39151
Tssr39152 4 129487087 to 129487098 11 + TSS region transcription start site region 39152
Tssr39153 4 129487158 to 129487172 14 + TSS region transcription start site region 39153
Tssk3 4 129489008 to 129490770 1762 - protein coding gene testis-specific serine kinase 3
Tssr43503 4 129490760 to 129490776 16 - TSS region transcription start site region 43503
Tssr39154 4 129490860 to 129490878 18 + TSS region transcription start site region 39154
Cpgi14894 4 129490930 to 129492020 1090 CpG island CpG island 14894
Tssr43504 4 129491059 to 129491060 1 - TSS region transcription start site region 43504
Tssr43505 4 129491085 to 129491095 10 - TSS region transcription start site region 43505
Tssr43506 4 129491108 to 129491119 11 - TSS region transcription start site region 43506
Tssr43507 4 129491130 to 129491131 1 - TSS region transcription start site region 43507
Fam229a 4 129491190 to 129491956 766 + protein coding gene family with sequence similarity 229, member A
Tssr39155 4 129491192 to 129491220 28 + TSS region transcription start site region 39155
Tssr39156 4 129491231 to 129491246 15 + TSS region transcription start site region 39156
Tssr1306 4 129491266 to 129491274 8 + TSS region transcription start site region 1306
Tssr39157 4 129491293 to 129491300 7 + TSS region transcription start site region 39157
Gm12979 4 129491969 to 129509746 17777 - antisense lncRNA gene predicted gene 12979
Cpgi14895 4 129500518 to 129501037 519 CpG island CpG island 14895
Tssr43508 4 129500770 to 129500784 14 - TSS region transcription start site region 43508
Tssr43509 4 129500799 to 129500838 39 - TSS region transcription start site region 43509
Tssr39158 4 129512494 to 129512520 26 + TSS region transcription start site region 39158
Tssr39159 4 129512551 to 129512567 16 + TSS region transcription start site region 39159
Cpgi14896 4 129513269 to 129514794 1525 CpG island CpG island 14896
Tssr39160 4 129513397 to 129513409 12 + TSS region transcription start site region 39160
Tssr39161 4 129513432 to 129513444 12 + TSS region transcription start site region 39161
Marcksl1 4 129513581 to 129515981 2400 + protein coding gene MARCKS-like 1
Tssr39162 4 129513624 to 129513644 20 + TSS region transcription start site region 39162
Tssr39163 4 129514757 to 129514774 17 + TSS region transcription start site region 39163
Tssr39164 4 129514964 to 129514981 17 + TSS region transcription start site region 39164
Tssr39165 4 129515135 to 129515180 45 + TSS region transcription start site region 39165
Tssr39166 4 129515340 to 129515350 10 + TSS region transcription start site region 39166
Tssr39167 4 129515496 to 129515508 12 + TSS region transcription start site region 39167
Tssr39168 4 129515590 to 129515605 15 + TSS region transcription start site region 39168
Tssr39169 4 129515619 to 129515642 23 + TSS region transcription start site region 39169
Tssr39170 4 129515684 to 129515689 5 + TSS region transcription start site region 39170
Tssr39171 4 129515805 to 129515844 39 + TSS region transcription start site region 39171
Tssr39172 4 129515875 to 129515912 37 + TSS region transcription start site region 39172
Hdac1 4 129516104 to 129542646 26542 - protein coding gene histone deacetylase 1
Cpgi14897 4 129541934 to 129542117 183 CpG island CpG island 14897
Cpgi14898 4 129542300 to 129543068 768 CpG island CpG island 14898
Tssr43510 4 129542674 to 129542707 33 - TSS region transcription start site region 43510
Tssr43511 4 129542710 to 129542727 17 - TSS region transcription start site region 43511
Lck 4 129548344 to 129573641 25297 - protein coding gene lymphocyte protein tyrosine kinase
Tssr43512 4 129550796 to 129550801 5 - TSS region transcription start site region 43512
Cpgi14899 4 129555488 to 129555752 264 CpG island CpG island 14899
Tssr43513 4 129555784 to 129555815 31 - TSS region transcription start site region 43513
Cpgi14900 4 129556136 to 129556764 628 CpG island CpG island 14900
Tssr43514 4 129556475 to 129556549 74 - TSS region transcription start site region 43514
Tssr39173 4 129556636 to 129556659 23 + TSS region transcription start site region 39173
Tssr39174 4 129556812 to 129556816 4 + TSS region transcription start site region 39174
Mir8119 4 129557683 to 129557811 128 - miRNA gene microRNA 8119
Tssr43515 4 129558253 to 129558258 5 - TSS region transcription start site region 43515
Tssr43516 4 129558334 to 129558345 11 - TSS region transcription start site region 43516
Tssr43517 4 129558355 to 129558378 23 - TSS region transcription start site region 43517
Tssr43518 4 129558387 to 129558398 11 - TSS region transcription start site region 43518
Tssr43519 4 129558749 to 129558760 11 - TSS region transcription start site region 43519
Tssr43520 4 129558776 to 129558792 16 - TSS region transcription start site region 43520
Tssr43521 4 129558808 to 129558821 13 - TSS region transcription start site region 43521
Tssr43522 4 129558830 to 129558841 11 - TSS region transcription start site region 43522
Tssr39175 4 129570264 to 129570306 42 + TSS region transcription start site region 39175
D4Mit203 4 129572018 to 129572122 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 203
Lrdg2 4 129572018 to 151570093 21998075 QTL light induced retinal degeneration 2
Tlsr3 4 129572018 to 137137225 7565207 QTL thymic lymphoma suppressor region 3
Tssr43523 4 129572375 to 129572385 10 - TSS region transcription start site region 43523
Tssr43524 4 129572410 to 129572416 6 - TSS region transcription start site region 43524
Tssr39176 4 129572569 to 129572587 18 + TSS region transcription start site region 39176
Tssr43525 4 129573570 to 129573598 28 - TSS region transcription start site region 43525
Tssr43526 4 129573599 to 129573629 30 - TSS region transcription start site region 43526
Tssr43527 4 129573637 to 129573652 15 - TSS region transcription start site region 43527
Tssr39177 4 129573757 to 129573768 11 + TSS region transcription start site region 39177
Tssr43528 4 129575196 to 129575201 5 - TSS region transcription start site region 43528
Tssr43529 4 129575286 to 129575297 11 - TSS region transcription start site region 43529
Tssr43530 4 129575345 to 129575352 7 - TSS region transcription start site region 43530
Tssr43531 4 129575388 to 129575401 13 - TSS region transcription start site region 43531
Tssr39178 4 129575635 to 129575651 16 + TSS region transcription start site region 39178
Fam167b 4 129576815 to 129578549 1734 - protein coding gene family with sequence similarity 167, member B
Tssr43532 4 129578512 to 129578517 5 - TSS region transcription start site region 43532
Tssr43533 4 129578521 to 129578532 11 - TSS region transcription start site region 43533
Tssr43534 4 129578535 to 129578560 25 - TSS region transcription start site region 43534
Cpgi14901 4 129584907 to 129585454 547 CpG island CpG island 14901
Eif3i 4 129591974 to 129600648 8674 - protein coding gene eukaryotic translation initiation factor 3, subunit I
Tssr43535 4 129595109 to 129595113 4 - TSS region transcription start site region 43535
Tssr43536 4 129595168 to 129595193 25 - TSS region transcription start site region 43536
Cpgi14902 4 129600117 to 129601193 1076 CpG island CpG island 14902
Tssr43537 4 129600586 to 129600595 9 - TSS region transcription start site region 43537
Tssr43538 4 129600608 to 129600639 31 - TSS region transcription start site region 43538
Tssr43539 4 129600642 to 129600653 11 - TSS region transcription start site region 43539
Tssr39179 4 129600670 to 129600715 45 + TSS region transcription start site region 39179
Tmem234 4 129600691 to 129608533 7842 + protein coding gene transmembrane protein 234
Dcdc2b 4 129608331 to 129614257 5926 - protein coding gene doublecortin domain containing 2b
Tssr43540 4 129614261 to 129614280 19 - TSS region transcription start site region 43540
Iqcc 4 129615617 to 129619107 3490 - protein coding gene IQ motif containing C
Cpgi14903 4 129618786 to 129619480 694 CpG island CpG island 14903
Tssr43541 4 129619052 to 129619063 11 - TSS region transcription start site region 43541
Tssr43542 4 129619069 to 129619118 49 - TSS region transcription start site region 43542
Ccdc28b 4 129619274 to 129623908 4634 - protein coding gene coiled coil domain containing 28B
Tssr43543 4 129621392 to 129621427 35 - TSS region transcription start site region 43543
Tssr43544 4 129622945 to 129622952 7 - TSS region transcription start site region 43544
Gm34305 4 129623106 to 129624060 954 + lncRNA gene predicted gene, 34305
Tssr43545 4 129623870 to 129623925 55 - TSS region transcription start site region 43545
2810452K05Rik 4 129624253 to 129625071 818 unclassified gene RIKEN cDNA 2810452K05 gene
Txlna 4 129626078 to 129641065 14987 - protein coding gene taxilin alpha
Tgq17 4 129629696 to 129629696 0 QTL triglyceride QTL 17
Cpgi14904 4 129640509 to 129641243 734 CpG island CpG island 14904
Tssr43546 4 129640614 to 129640660 46 - TSS region transcription start site region 43546
Tssr43547 4 129640691 to 129640725 34 - TSS region transcription start site region 43547
Tssr1307 4 129640967 to 129640978 11 - TSS region transcription start site region 1307
Tssr43548 4 129640991 to 129641051 60 - TSS region transcription start site region 43548
Tssr43549 4 129641060 to 129641080 20 - TSS region transcription start site region 43549
Kpna6 4 129643980 to 129672767 28787 - protein coding gene karyopherin (importin) alpha 6
Tssr43550 4 129647491 to 129647518 27 - TSS region transcription start site region 43550
Tssr39180 4 129650240 to 129650243 3 + TSS region transcription start site region 39180
Tssr43551 4 129662442 to 129662485 43 - TSS region transcription start site region 43551
Cpgi14905 4 129672097 to 129673101 1004 CpG island CpG island 14905
Tssr43552 4 129672697 to 129672708 11 - TSS region transcription start site region 43552
Tssr43553 4 129672712 to 129672774 62 - TSS region transcription start site region 43553
Tssr43554 4 129672782 to 129672793 11 - TSS region transcription start site region 43554