Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129246829-129508079

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C77080 4 129219578 to 129261404 41826 - protein coding gene expressed sequence C77080
Cpgi14885 4 129247741 to 129248911 1170 CpG island CpG island 14885
Tssr43486 4 129248415 to 129248430 15 - TSS region transcription start site region 43486
Tssr43487 4 129248431 to 129248498 67 - TSS region transcription start site region 43487
Tssr43488 4 129261394 to 129261406 12 - TSS region transcription start site region 43488
Gm12976 4 129261965 to 129265010 3045 + lincRNA gene predicted gene 12976
Tssr43489 4 129263475 to 129263482 7 - TSS region transcription start site region 43489
Tssr43490 4 129268770 to 129268828 58 - TSS region transcription start site region 43490
Cpgi14886 4 129276557 to 129276900 343 CpG island CpG island 14886
Gm22994 4 129282865 to 129282946 81 - miRNA gene predicted gene, 22994
Cpgi14887 4 129286937 to 129288231 1294 CpG island CpG island 14887
Tssr39133 4 129287614 to 129287644 30 + TSS region transcription start site region 39133
Sync 4 129287617 to 129308559 20942 + protein coding gene syncoilin
Tssr39134 4 129287646 to 129287666 20 + TSS region transcription start site region 39134
Tssr39135 4 129287673 to 129287685 12 + TSS region transcription start site region 39135
Tssr39136 4 129287698 to 129287713 15 + TSS region transcription start site region 39136
Tssr39137 4 129287722 to 129287738 16 + TSS region transcription start site region 39137
Cpgi14888 4 129293403 to 129294159 756 CpG island CpG island 14888
Rbbp4 4 129307100 to 129335370 28270 - protein coding gene retinoblastoma binding protein 4, chromatin remodeling factor
Tssr39138 4 129308413 to 129308418 5 + TSS region transcription start site region 39138
Gm26722 4 129309081 to 129318443 9362 + lincRNA gene predicted gene, 26722
Tssr43491 4 129309872 to 129309886 14 - TSS region transcription start site region 43491
Tssr39139 4 129312574 to 129312578 4 + TSS region transcription start site region 39139
Tssr39140 4 129327184 to 129327189 5 + TSS region transcription start site region 39140
Cpgi14889 4 129334606 to 129336004 1398 CpG island CpG island 14889
Tssr43492 4 129335243 to 129335264 21 - TSS region transcription start site region 43492
Tssr43493 4 129335297 to 129335317 20 - TSS region transcription start site region 43493
Tssr43494 4 129335324 to 129335377 53 - TSS region transcription start site region 43494
Zbtb8os 4 129335592 to 129347083 11491 + protein coding gene zinc finger and BTB domain containing 8 opposite strand
Tssr39141 4 129335593 to 129335645 52 + TSS region transcription start site region 39141
Tssr39142 4 129335962 to 129335987 25 + TSS region transcription start site region 39142
Tssr39143 4 129336016 to 129336041 25 + TSS region transcription start site region 39143
Zbtb8a 4 129353632 to 129378028 24396 - protein coding gene zinc finger and BTB domain containing 8a
Tssr43495 4 129374285 to 129374327 42 - TSS region transcription start site region 43495
Tssr39144 4 129375328 to 129375346 18 + TSS region transcription start site region 39144
Tssr43496 4 129376012 to 129376026 14 - TSS region transcription start site region 43496
Cpgi14890 4 129376829 to 129378079 1250 CpG island CpG island 14890
Tssr43497 4 129377826 to 129377838 12 - TSS region transcription start site region 43497
Tssr43498 4 129377847 to 129377924 77 - TSS region transcription start site region 43498
Tssr43499 4 129377933 to 129377950 17 - TSS region transcription start site region 43499
Tssr43500 4 129378996 to 129379006 10 - TSS region transcription start site region 43500
Gm12980 4 129379844 to 129380179 335 + pseudogene predicted gene 12980
Tssr39145 4 129381415 to 129381438 23 + TSS region transcription start site region 39145
C330020E22Rik 4 129382546 to 129407475 24929 + lncRNA gene RIKEN cDNA C330020E22 gene
Tssr39146 4 129382685 to 129382706 21 + TSS region transcription start site region 39146
Tssr39147 4 129382721 to 129382767 46 + TSS region transcription start site region 39147
Cpgi14891 4 129406491 to 129406825 334 CpG island CpG island 14891
Zbtb8b 4 129425765 to 129440853 15088 - protein coding gene zinc finger and BTB domain containing 8b
Cpgi14892 4 129440541 to 129440871 330 CpG island CpG island 14892
Tssr43501 4 129440800 to 129440823 23 - TSS region transcription start site region 43501
Tssr43502 4 129446966 to 129446971 5 - TSS region transcription start site region 43502
Tssr39148 4 129458350 to 129458351 1 + TSS region transcription start site region 39148
Gm24621 4 129458351 to 129458490 139 + snRNA gene predicted gene, 24621
4921504P20Rik 4 129460171 to 129461523 1352 unclassified gene RIKEN cDNA 4921504P20 gene
Cpgi14893 4 129461336 to 129462066 730 CpG island CpG island 14893
Tssr39149 4 129461661 to 129461689 28 + TSS region transcription start site region 39149
Bsdc1 4 129461679 to 129488498 26819 + protein coding gene BSD domain containing 1
Tssr39150 4 129464538 to 129464550 12 + TSS region transcription start site region 39150
Tssr39151 4 129474068 to 129474084 16 + TSS region transcription start site region 39151
Tssr39152 4 129487087 to 129487098 11 + TSS region transcription start site region 39152
Tssr39153 4 129487158 to 129487172 14 + TSS region transcription start site region 39153
Tssk3 4 129489008 to 129490770 1762 - protein coding gene testis-specific serine kinase 3
Tssr43503 4 129490760 to 129490776 16 - TSS region transcription start site region 43503
Tssr39154 4 129490860 to 129490878 18 + TSS region transcription start site region 39154
Cpgi14894 4 129490930 to 129492020 1090 CpG island CpG island 14894
Tssr43504 4 129491059 to 129491060 1 - TSS region transcription start site region 43504
Tssr43505 4 129491085 to 129491095 10 - TSS region transcription start site region 43505
Tssr43506 4 129491108 to 129491119 11 - TSS region transcription start site region 43506
Tssr43507 4 129491130 to 129491131 1 - TSS region transcription start site region 43507
Fam229a 4 129491190 to 129491956 766 + protein coding gene family with sequence similarity 229, member A
Tssr39155 4 129491192 to 129491220 28 + TSS region transcription start site region 39155
Tssr39156 4 129491231 to 129491246 15 + TSS region transcription start site region 39156
Tssr1306 4 129491266 to 129491274 8 + TSS region transcription start site region 1306
Tssr39157 4 129491293 to 129491300 7 + TSS region transcription start site region 39157
Gm12979 4 129491969 to 129509746 17777 - antisense lncRNA gene predicted gene 12979
Cpgi14895 4 129500518 to 129501037 519 CpG island CpG island 14895
Tssr43508 4 129500770 to 129500784 14 - TSS region transcription start site region 43508
Tssr43509 4 129500799 to 129500838 39 - TSS region transcription start site region 43509