Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:129011570-129222036

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr43453 4 129032701 to 129032730 29 - TSS region transcription start site region 43453
Tssr39098 4 129033434 to 129033447 13 + TSS region transcription start site region 39098
Tssr1304 4 129033783 to 129033798 15 - TSS region transcription start site region 1304
Tssr39099 4 129035376 to 129035399 23 + TSS region transcription start site region 39099
Tssr39100 4 129035658 to 129035664 6 + TSS region transcription start site region 39100
Cpgi14872 4 129048644 to 129049322 678 CpG island CpG island 14872
1700086P04Rik 4 129050097 to 129057983 7886 - lincRNA gene RIKEN cDNA 1700086P04 gene
Cpgi14873 4 129057801 to 129059422 1621 CpG island CpG island 14873
Tssr43454 4 129057957 to 129057988 31 - TSS region transcription start site region 43454
Tssr39101 4 129058075 to 129058091 16 + TSS region transcription start site region 39101
Tssr39102 4 129058098 to 129058122 24 + TSS region transcription start site region 39102
Tssr39103 4 129058133 to 129058152 19 + TSS region transcription start site region 39103
Rnf19b 4 129058146 to 129084526 26380 + protein coding gene ring finger protein 19B
Tssr39104 4 129058318 to 129058342 24 + TSS region transcription start site region 39104
Tssr43455 4 129058622 to 129058654 32 - TSS region transcription start site region 43455
D4Ertd179e 4 129060512 to 129060711 199 DNA segment DNA segment, Chr 4, ERATO Doi 179, expressed
Tssr39105 4 129066118 to 129066121 3 + TSS region transcription start site region 39105
Tssr39106 4 129070487 to 129070500 13 + TSS region transcription start site region 39106
Tssr39107 4 129070504 to 129070517 13 + TSS region transcription start site region 39107
Tssr39108 4 129070544 to 129070569 25 + TSS region transcription start site region 39108
Tssr39109 4 129072161 to 129072165 4 + TSS region transcription start site region 39109
Tssr39110 4 129077466 to 129077469 3 + TSS region transcription start site region 39110
Tssr39111 4 129080494 to 129080506 12 + TSS region transcription start site region 39111
Tssr39112 4 129080507 to 129080521 14 + TSS region transcription start site region 39112
Tssr39113 4 129082740 to 129082760 20 + TSS region transcription start site region 39113
Tssr39114 4 129082832 to 129082846 14 + TSS region transcription start site region 39114
Tssr39115 4 129083881 to 129083905 24 + TSS region transcription start site region 39115
Tssr39116 4 129084047 to 129084065 18 + TSS region transcription start site region 39116
Tssr43456 4 129084519 to 129084527 8 - TSS region transcription start site region 43456
Cpgi14874 4 129095300 to 129095490 190 CpG island CpG island 14874
Cpgi14875 4 129105258 to 129105789 531 CpG island CpG island 14875
Tssr39117 4 129105504 to 129105528 24 + TSS region transcription start site region 39117
Tssr39118 4 129105532 to 129105622 90 + TSS region transcription start site region 39118
Tmem54 4 129105548 to 129111626 6078 + protein coding gene transmembrane protein 54
Tssr39119 4 129105627 to 129105641 14 + TSS region transcription start site region 39119
Tssr39120 4 129106769 to 129106779 10 + TSS region transcription start site region 39120
Tssr39121 4 129106790 to 129106803 13 + TSS region transcription start site region 39121
Tssr39122 4 129106807 to 129106817 10 + TSS region transcription start site region 39122
Tssr39123 4 129107772 to 129107794 22 + TSS region transcription start site region 39123
Hpca 4 129111570 to 129122036 10466 - protein coding gene hippocalcin
Tssr43457 4 129111794 to 129111830 36 - TSS region transcription start site region 43457
Tssr43458 4 129111839 to 129111852 13 - TSS region transcription start site region 43458
Tssr43459 4 129111864 to 129111881 17 - TSS region transcription start site region 43459
Tssr43460 4 129111975 to 129111991 16 - TSS region transcription start site region 43460
Tssr43461 4 129112089 to 129112101 12 - TSS region transcription start site region 43461
Cpgi14876 4 129113106 to 129113447 341 CpG island CpG island 14876
Tssr43462 4 129118709 to 129118716 7 - TSS region transcription start site region 43462
Tssr43463 4 129118726 to 129118732 6 - TSS region transcription start site region 43463
Cpgi14877 4 129120656 to 129121971 1315 CpG island CpG island 14877
Tssr43464 4 129121234 to 129121315 81 - TSS region transcription start site region 43464
Tssr43465 4 129121581 to 129121600 19 - TSS region transcription start site region 43465
Tssr43466 4 129121601 to 129121624 23 - TSS region transcription start site region 43466
Tssr43467 4 129121647 to 129121662 15 - TSS region transcription start site region 43467
Tssr43468 4 129121699 to 129121734 35 - TSS region transcription start site region 43468
Tssr43469 4 129122052 to 129122063 11 - TSS region transcription start site region 43469
Tssr43470 4 129122064 to 129122095 31 - TSS region transcription start site region 43470
Cpgi14878 4 129125904 to 129126134 230 CpG island CpG island 14878
Gm15906 4 129135091 to 129136910 1819 + lincRNA gene predicted gene 15906
Cpgi14879 4 129136206 to 129137682 1476 CpG island CpG island 14879
Tssr39124 4 129136684 to 129136704 20 + TSS region transcription start site region 39124
Tssr39125 4 129136859 to 129136876 17 + TSS region transcription start site region 39125
Tssr39126 4 129136877 to 129136903 26 + TSS region transcription start site region 39126
Tssr39127 4 129136920 to 129136941 21 + TSS region transcription start site region 39127
Tssr39128 4 129136948 to 129136973 25 + TSS region transcription start site region 39128
Fndc5 4 129136999 to 129144593 7594 + protein coding gene fibronectin type III domain containing 5
S100pbp 4 129148005 to 129189727 41722 - protein coding gene S100P binding protein
Cpgi14880 4 129188779 to 129190354 1575 CpG island CpG island 14880
Tssr43471 4 129189431 to 129189448 17 - TSS region transcription start site region 43471
Tssr1305 4 129189458 to 129189483 25 - TSS region transcription start site region 1305
Tssr43472 4 129189569 to 129189594 25 - TSS region transcription start site region 43472
Tssr43473 4 129189600 to 129189631 31 - TSS region transcription start site region 43473
Tssr43474 4 129189646 to 129189697 51 - TSS region transcription start site region 43474
Yars 4 129189765 to 129219607 29842 + protein coding gene tyrosyl-tRNA synthetase
Tssr39129 4 129189863 to 129189956 93 + TSS region transcription start site region 39129
D4Ertd100e 4 129206668 to 129206900 232 DNA segment DNA segment, Chr 4, ERATO Doi 100, expressed
C77080 4 129219578 to 129261404 41826 - protein coding gene expressed sequence C77080