Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:128228539-128965098

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csmd2 4 127987857 to 128567656 579799 + protein coding gene CUB and Sushi multiple domains 2
Hmgb4 4 128260212 to 128260895 683 - protein coding gene high-mobility group box 4
Tssr43435 4 128260888 to 128260900 12 - TSS region transcription start site region 43435
Tssr43436 4 128260917 to 128260922 5 - TSS region transcription start site region 43436
Hmgb4os 4 128261044 to 128262990 1946 + antisense lncRNA gene high-mobility group box 4, opposite strand
Tssr39067 4 128318974 to 128319011 37 + TSS region transcription start site region 39067
Gm33656 4 128506211 to 128533358 27147 - lncRNA gene predicted gene, 33656
Cpgi14854 4 128546602 to 128546861 259 CpG island CpG island 14854
Zscan20 4 128583539 to 128610098 26559 - protein coding gene zinc finger and SCAN domains 20
Cpgi14855 4 128609667 to 128610276 609 CpG island CpG island 14855
Tlr12 4 128615446 to 128618619 3173 - protein coding gene toll-like receptor 12
Tssr43437 4 128618316 to 128618327 11 - TSS region transcription start site region 43437
Tssr43438 4 128618572 to 128618597 25 - TSS region transcription start site region 43438
Tssr43439 4 128618609 to 128618625 16 - TSS region transcription start site region 43439
Tssr43440 4 128618628 to 128618646 18 - TSS region transcription start site region 43440
Cpgi14856 4 128630146 to 128630585 439 CpG island CpG island 14856
Gm12958 4 128637471 to 128638447 976 + lincRNA gene predicted gene 12958
Cpgi14857 4 128654453 to 128655415 962 CpG island CpG island 14857
Tssr39068 4 128654686 to 128654729 43 + TSS region transcription start site region 39068
Phc2 4 128654702 to 128752881 98179 + protein coding gene polyhomeotic 2
Tssr39069 4 128688726 to 128688750 24 + TSS region transcription start site region 39069
Cpgi14858 4 128711599 to 128711807 208 CpG island CpG island 14858
Tssr39070 4 128711843 to 128711879 36 + TSS region transcription start site region 39070
Tssr39071 4 128722181 to 128722191 10 + TSS region transcription start site region 39071
Cpgi14859 4 128726941 to 128728425 1484 CpG island CpG island 14859
Tssr39072 4 128727568 to 128727579 11 + TSS region transcription start site region 39072
Tssr39073 4 128727589 to 128727644 55 + TSS region transcription start site region 39073
Tssr39074 4 128743433 to 128743452 19 + TSS region transcription start site region 39074
Tssr39075 4 128744990 to 128745009 19 + TSS region transcription start site region 39075
Tssr39076 4 128745049 to 128745067 18 + TSS region transcription start site region 39076
Tssr43441 4 128745084 to 128745128 44 - TSS region transcription start site region 43441
Tssr39077 4 128747124 to 128747144 20 + TSS region transcription start site region 39077
Cpgi14860 4 128747920 to 128748234 314 CpG island CpG island 14860
Tssr39078 4 128752054 to 128752091 37 + TSS region transcription start site region 39078
A3galt2 4 128759258 to 128770201 10943 + protein coding gene alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)
Cpgi14861 4 128766947 to 128767629 682 CpG island CpG island 14861
Zfp362 4 128773088 to 128806045 32957 - protein coding gene zinc finger protein 362
Tssr43442 4 128786216 to 128786227 11 - TSS region transcription start site region 43442
Tssr43443 4 128786456 to 128786485 29 - TSS region transcription start site region 43443
Tssr43444 4 128787211 to 128787214 3 - TSS region transcription start site region 43444
Cpgi14862 4 128789824 to 128790074 250 CpG island CpG island 14862
Cpgi14863 4 128805468 to 128807202 1734 CpG island CpG island 14863
Tssr39079 4 128805763 to 128805779 16 + TSS region transcription start site region 39079
Tssr43445 4 128806103 to 128806167 64 - TSS region transcription start site region 43445
Tssr43446 4 128806178 to 128806186 8 - TSS region transcription start site region 43446
Tssr43447 4 128806290 to 128806369 79 - TSS region transcription start site region 43447
Tssr43448 4 128806436 to 128806471 35 - TSS region transcription start site region 43448
Tssr43449 4 128806487 to 128806513 26 - TSS region transcription start site region 43449
Tssr39080 4 128808379 to 128808386 7 + TSS region transcription start site region 39080
Tssr39081 4 128846163 to 128846166 3 + TSS region transcription start site region 39081
Gm12968 4 128846197 to 128873698 27501 + lincRNA gene predicted gene 12968
D4Dcr26 4 128855509 to 128855604 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 26
Gm12969 4 128868393 to 128869396 1003 - pseudogene predicted gene 12969
Gm33814 4 128871998 to 128877440 5442 - lncRNA gene predicted gene, 33814
Cpgi14864 4 128873044 to 128873281 237 CpG island CpG island 14864
Cpgi14865 4 128874101 to 128874266 165 CpG island CpG island 14865
Cpgi14866 4 128883332 to 128884831 1499 CpG island CpG island 14866
Tssr39082 4 128883549 to 128883611 62 + TSS region transcription start site region 39082
Trim62 4 128883580 to 128911328 27748 + protein coding gene tripartite motif-containing 62
Tssr39083 4 128884039 to 128884050 11 + TSS region transcription start site region 39083
Tssr39084 4 128884098 to 128884114 16 + TSS region transcription start site region 39084
Tssr39085 4 128902206 to 128902211 5 + TSS region transcription start site region 39085
Cpgi14867 4 128909091 to 128909589 498 CpG island CpG island 14867
Gm33901 4 128917334 to 128922263 4929 + lncRNA gene predicted gene, 33901
Cpgi14868 4 128924885 to 128925307 422 CpG island CpG island 14868
Azin2 4 128930233 to 128962442 32209 - protein coding gene antizyme inhibitor 2
Tssr1302 4 128935906 to 128935912 6 - TSS region transcription start site region 1302
Tssr39086 4 128935999 to 128936012 13 + TSS region transcription start site region 39086
Gm15904 4 128936005 to 128940195 4190 + antisense lncRNA gene predicted gene 15904
Cpgi14869 4 128947487 to 128947740 253 CpG island CpG island 14869
Tssr43450 4 128947704 to 128947748 44 - TSS region transcription start site region 43450
D4Mit72 4 128952986 to 128953189 203 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 72
Tssr39087 4 128960976 to 128960992 16 + TSS region transcription start site region 39087
Tssr43451 4 128961880 to 128961884 4 - TSS region transcription start site region 43451
Cpgi14870 4 128961973 to 128962815 842 CpG island CpG island 14870
Tssr43452 4 128962428 to 128962449 21 - TSS region transcription start site region 43452
Tssr39088 4 128962596 to 128962601 5 + TSS region transcription start site region 39088