Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:126524848-128426840

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216 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ago4 4 126489541 to 126533472 43931 - protein coding gene argonaute RISC catalytic subunit 4
Cpgi14822 4 126532760 to 126534075 1315 CpG island CpG island 14822
Tssr43385 4 126533273 to 126533321 48 - TSS region transcription start site region 43385
Tssr43386 4 126533397 to 126533423 26 - TSS region transcription start site region 43386
Tssr43387 4 126533441 to 126533479 38 - TSS region transcription start site region 43387
Tssr43388 4 126533561 to 126533613 52 - TSS region transcription start site region 43388
Cpgi14823 4 126556714 to 126557538 824 CpG island CpG island 14823
Clspn 4 126556935 to 126593903 36968 + protein coding gene claspin
Tssr39002 4 126556956 to 126556957 1 + TSS region transcription start site region 39002
Tssr39003 4 126556963 to 126556966 3 + TSS region transcription start site region 39003
Tssr39004 4 126556971 to 126556992 21 + TSS region transcription start site region 39004
Tssr39005 4 126556994 to 126557020 26 + TSS region transcription start site region 39005
Tssr39006 4 126557039 to 126557048 9 + TSS region transcription start site region 39006
Mir7119 4 126559860 to 126559918 58 + miRNA gene microRNA 7119
Gm12936 4 126584509 to 126584809 300 - pseudogene predicted gene 12936
Cpgi14824 4 126609511 to 126610191 680 CpG island CpG island 14824
Tssr39007 4 126609819 to 126609896 77 + TSS region transcription start site region 39007
5730409E04Rik 4 126609854 to 126614371 4517 + protein coding gene RIKEN cDNA 5730409E04Rik gene
Tssr39008 4 126609899 to 126609911 12 + TSS region transcription start site region 39008
Tssr39009 4 126609934 to 126609941 7 + TSS region transcription start site region 39009
Tssr39010 4 126609945 to 126609952 7 + TSS region transcription start site region 39010
Tssr39011 4 126613037 to 126613072 35 + TSS region transcription start site region 39011
Gm40250 4 126614367 to 126614787 420 - lncRNA gene predicted gene, 40250
Gm46870 4 126616374 to 126620297 3923 - lncRNA gene predicted gene, 46870
Cpgi14825 4 126619838 to 126620378 540 CpG island CpG island 14825
Tssr39012 4 126665226 to 126665227 1 + TSS region transcription start site region 39012
Gm12933 4 126665254 to 126666125 871 + pseudogene predicted gene 12933
Cpgi14826 4 126677420 to 126677952 532 CpG island CpG island 14826
Psmb2 4 126677634 to 126709715 32081 + protein coding gene proteasome (prosome, macropain) subunit, beta type 2
Tssr39013 4 126677641 to 126677646 5 + TSS region transcription start site region 39013
Tssr39014 4 126677659 to 126677673 14 + TSS region transcription start site region 39014
Tssr39015 4 126677678 to 126677689 11 + TSS region transcription start site region 39015
Tssr39016 4 126677696 to 126677702 6 + TSS region transcription start site region 39016
E330021A06Rik 4 126699535 to 126704028 4493 unclassified gene RIKEN cDNA E330021A06 gene
Tssr39017 4 126706051 to 126706083 32 + TSS region transcription start site region 39017
Tfap2e 4 126716006 to 126736240 20234 - protein coding gene transcription factor AP-2, epsilon
Cpgi14827 4 126732247 to 126732914 667 CpG island CpG island 14827
Cpgi14828 4 126734400 to 126736434 2034 CpG island CpG island 14828
Tssr43389 4 126736236 to 126736245 9 - TSS region transcription start site region 43389
Ncdn 4 126743750 to 126753438 9688 - protein coding gene neurochondrin
Tssr43390 4 126744110 to 126744121 11 - TSS region transcription start site region 43390
Tssr43391 4 126744122 to 126744137 15 - TSS region transcription start site region 43391
Tssr43392 4 126744230 to 126744244 14 - TSS region transcription start site region 43392
Cpgi14829 4 126744862 to 126745124 262 CpG island CpG island 14829
Cpgi14830 4 126749822 to 126750630 808 CpG island CpG island 14830
Tssr43393 4 126752015 to 126752022 7 - TSS region transcription start site region 43393
Tssr43394 4 126752077 to 126752109 32 - TSS region transcription start site region 43394
Tssr43395 4 126752111 to 126752118 7 - TSS region transcription start site region 43395
Tssr43396 4 126752590 to 126752602 12 - TSS region transcription start site region 43396
Cpgi14831 4 126752642 to 126754316 1674 CpG island CpG island 14831
Tssr43397 4 126752777 to 126752788 11 - TSS region transcription start site region 43397
Tssr43398 4 126752987 to 126753054 67 - TSS region transcription start site region 43398
Tssr1300 4 126753294 to 126753307 13 - TSS region transcription start site region 1300
Tssr43399 4 126753349 to 126753361 12 - TSS region transcription start site region 43399
Tssr43400 4 126753372 to 126753440 68 - TSS region transcription start site region 43400
AU040320 4 126753555 to 126869694 116139 + protein coding gene expressed sequence AU040320
Tssr43401 4 126753630 to 126753644 14 - TSS region transcription start site region 43401
Tssr43402 4 126753666 to 126753680 14 - TSS region transcription start site region 43402
Tssr43403 4 126753710 to 126753729 19 - TSS region transcription start site region 43403
Tssr43404 4 126753746 to 126753782 36 - TSS region transcription start site region 43404
Tssr39018 4 126753788 to 126753835 47 + TSS region transcription start site region 39018
Tssr39019 4 126753870 to 126753880 10 + TSS region transcription start site region 39019
Tssr39020 4 126756548 to 126756580 32 + TSS region transcription start site region 39020
Tssr39021 4 126756983 to 126757004 21 + TSS region transcription start site region 39021
Tssr39022 4 126757006 to 126757013 7 + TSS region transcription start site region 39022
Tssr39023 4 126764566 to 126764586 20 + TSS region transcription start site region 39023
Gm12937 4 126795473 to 126796415 942 - pseudogene predicted gene 12937
Tssr1301 4 126808584 to 126808588 4 + TSS region transcription start site region 1301
Gm24161 4 126818016 to 126818145 129 - snoRNA gene predicted gene, 24161
D4Mit73 4 126820691 to 126820839 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 73
Tssr39024 4 126830661 to 126830665 4 + TSS region transcription start site region 39024
Tssr39025 4 126850393 to 126850404 11 + TSS region transcription start site region 39025
Gm25604 4 126860980 to 126861112 132 - snoRNA gene predicted gene, 25604
Zmym4 4 126861939 to 126968135 106196 - protein coding gene zinc finger, MYM-type 4
A730059M13Rik 4 126916975 to 126920029 3054 unclassified gene RIKEN cDNA A730059M13 gene
Cpgi14832 4 126967225 to 126968410 1185 CpG island CpG island 14832
Tssr43405 4 126967992 to 126967999 7 - TSS region transcription start site region 43405
Tssr43406 4 126968050 to 126968114 64 - TSS region transcription start site region 43406
Tssr43407 4 126968124 to 126968154 30 - TSS region transcription start site region 43407
4933424C08Rik 4 126968131 to 126969378 1247 unclassified gene RIKEN cDNA 4933424C08 gene
Tssr43408 4 126968159 to 126968177 18 - TSS region transcription start site region 43408
Tssr43409 4 126968180 to 126968198 18 - TSS region transcription start site region 43409
Tssr43410 4 126968200 to 126968236 36 - TSS region transcription start site region 43410
Tssr39026 4 126968427 to 126968436 9 + TSS region transcription start site region 39026
Tssr43411 4 126968843 to 126968853 10 - TSS region transcription start site region 43411
Gm12939 4 126983439 to 126983603 164 + pseudogene predicted gene 12939
Cpgi14833 4 127021198 to 127022549 1351 CpG island CpG island 14833
Tssr39027 4 127021285 to 127021292 7 + TSS region transcription start site region 39027
Tssr39028 4 127021294 to 127021299 5 + TSS region transcription start site region 39028
Tssr39029 4 127021311 to 127021339 28 + TSS region transcription start site region 39029
Sfpq 4 127021324 to 127037013 15689 + protein coding gene splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Tssr39030 4 127021978 to 127021992 14 + TSS region transcription start site region 39030
Tssr39031 4 127023332 to 127023354 22 + TSS region transcription start site region 39031
Tssr39032 4 127023406 to 127023434 28 + TSS region transcription start site region 39032
Tssr39033 4 127023439 to 127023460 21 + TSS region transcription start site region 39033
Tssr39034 4 127023478 to 127023509 31 + TSS region transcription start site region 39034
Tssr39035 4 127023658 to 127023740 82 + TSS region transcription start site region 39035
Tssr39036 4 127025849 to 127025914 65 + TSS region transcription start site region 39036
Tssr39037 4 127029846 to 127029899 53 + TSS region transcription start site region 39037
Tssr39038 4 127030167 to 127030178 11 + TSS region transcription start site region 39038
Gm12940 4 127033731 to 127049398 15667 + unclassified non-coding RNA gene predicted gene 12940
Tssr39039 4 127035099 to 127035115 16 + TSS region transcription start site region 39039
Tssr39040 4 127035668 to 127035678 10 + TSS region transcription start site region 39040
Gm12941 4 127046383 to 127046602 219 + pseudogene predicted gene 12941
Zmym1 4 127047094 to 127061152 14058 - protein coding gene zinc finger, MYM domain containing 1
Gm12944 4 127056262 to 127056724 462 + pseudogene predicted gene 12944
Cpgi14834 4 127060878 to 127061275 397 CpG island CpG island 14834
Tssr43412 4 127061085 to 127061125 40 - TSS region transcription start site region 43412
Tssr43413 4 127061126 to 127061143 17 - TSS region transcription start site region 43413
Cpgi14835 4 127076976 to 127077660 684 CpG island CpG island 14835
Tssr39041 4 127077374 to 127077461 87 + TSS region transcription start site region 39041
Zmym6 4 127077383 to 127124372 46989 + protein coding gene zinc finger, MYM-type 6
Gm25600 4 127108466 to 127108571 105 - snRNA gene predicted gene, 25600
Tssr39042 4 127109808 to 127109813 5 + TSS region transcription start site region 39042
Cpgi14836 4 127125838 to 127126351 513 CpG island CpG island 14836
Tssr39043 4 127126034 to 127126081 47 + TSS region transcription start site region 39043
Tmem35b 4 127126043 to 127129660 3617 + protein coding gene transmembrane protein 35B
Gm12943 4 127141279 to 127141488 209 - pseudogene predicted gene 12943
Tssr43414 4 127141483 to 127141511 28 - TSS region transcription start site region 43414
Cpgi14837 4 127150159 to 127150326 167 CpG island CpG island 14837
Cpgi14838 4 127168177 to 127170077 1900 CpG island CpG island 14838
Tssr39044 4 127168291 to 127168304 13 + TSS region transcription start site region 39044
Tssr39045 4 127168310 to 127168348 38 + TSS region transcription start site region 39045
Tssr39046 4 127168351 to 127168361 10 + TSS region transcription start site region 39046
Tssr39047 4 127168531 to 127168551 20 + TSS region transcription start site region 39047
Tssr39048 4 127168627 to 127168652 25 + TSS region transcription start site region 39048
Tssr39049 4 127168655 to 127168682 27 + TSS region transcription start site region 39049
Tssr39050 4 127168758 to 127168779 21 + TSS region transcription start site region 39050
Tssr39051 4 127168956 to 127168969 13 + TSS region transcription start site region 39051
Tssr39052 4 127169131 to 127169230 99 + TSS region transcription start site region 39052
Dlgap3 4 127169204 to 127237022 67818 + protein coding gene DLG associated protein 3
Tssr39053 4 127172866 to 127172898 32 + TSS region transcription start site region 39053
Tssr39054 4 127173220 to 127173233 13 + TSS region transcription start site region 39054
Cpgi14839 4 127195004 to 127195209 205 CpG island CpG island 14839
Tssr39055 4 127195231 to 127195262 31 + TSS region transcription start site region 39055
Cpgi14840 4 127199637 to 127199903 266 CpG island CpG island 14840
Tssr39056 4 127208291 to 127208303 12 + TSS region transcription start site region 39056
Tssr39057 4 127210307 to 127210329 22 + TSS region transcription start site region 39057
Cpgi14841 4 127214292 to 127215019 727 CpG island CpG island 14841
Tssr39058 4 127214745 to 127214777 32 + TSS region transcription start site region 39058
Cpgi14842 4 127233496 to 127233994 498 CpG island CpG island 14842
Cpgi14843 4 127235390 to 127236944 1554 CpG island CpG island 14843
Cpgi14844 4 127243546 to 127244336 790 CpG island CpG island 14844
Smim12 4 127243784 to 127247809 4025 + protein coding gene small integral membrane protein 12
Tssr39059 4 127243788 to 127243856 68 + TSS region transcription start site region 39059
Gm33269 4 127248669 to 127313366 64697 + lncRNA gene predicted gene, 33269
Cpgi14845 4 127251798 to 127252279 481 CpG island CpG island 14845
Tssr43415 4 127252367 to 127252390 23 - TSS region transcription start site region 43415
Tssr39060 4 127262313 to 127262318 5 + TSS region transcription start site region 39060
Gm22221 4 127284731 to 127284833 102 - snRNA gene predicted gene, 22221
Gm12948 4 127296916 to 127297475 559 - pseudogene predicted gene 12948
Gja4 4 127311421 to 127314039 2618 - protein coding gene gap junction protein, alpha 4
Cpgi14846 4 127313777 to 127314223 446 CpG island CpG island 14846
Tssr43416 4 127313980 to 127313998 18 - TSS region transcription start site region 43416
Gjb3 4 127325235 to 127330836 5601 - protein coding gene gap junction protein, beta 3
Cpgi14847 4 127326117 to 127326714 597 CpG island CpG island 14847
Tssr43417 4 127326219 to 127326246 27 - TSS region transcription start site region 43417
Tssr43418 4 127329098 to 127329155 57 - TSS region transcription start site region 43418
Gm40251 4 127329245 to 127343262 14017 + lncRNA gene predicted gene, 40251
Cpgi14848 4 127330196 to 127330997 801 CpG island CpG island 14848
Tssr43419 4 127330547 to 127330626 79 - TSS region transcription start site region 43419
Tssr43420 4 127330775 to 127330786 11 - TSS region transcription start site region 43420
Tssr43421 4 127330799 to 127330845 46 - TSS region transcription start site region 43421
Cpgi14849 4 127342172 to 127342489 317 CpG island CpG island 14849
Tssr43422 4 127350699 to 127350710 11 - TSS region transcription start site region 43422
Gjb4 4 127351086 to 127354081 2995 - protein coding gene gap junction protein, beta 4
Tssr43423 4 127354074 to 127354086 12 - TSS region transcription start site region 43423
Tssr43424 4 127354209 to 127354219 10 - TSS region transcription start site region 43424
Gjb5 4 127354809 to 127358164 3355 - protein coding gene gap junction protein, beta 5
Tssr43425 4 127358104 to 127358107 3 - TSS region transcription start site region 43425
Tssr43426 4 127358109 to 127358120 11 - TSS region transcription start site region 43426
Tssr43427 4 127358124 to 127358187 63 - TSS region transcription start site region 43427
Tssr43428 4 127358195 to 127358208 13 - TSS region transcription start site region 43428
D4Mit336 4 127361763 to 127361884 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 336
Tssr39061 4 127371756 to 127371759 3 + TSS region transcription start site region 39061
D4Mit223 4 127388478 to 127388625 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 223
Gm12947 4 127408379 to 127408798 419 - pseudogene predicted gene 12947
Tssr43429 4 127408818 to 127408820 2 - TSS region transcription start site region 43429
Gm40252 4 127417126 to 127424822 7696 + lncRNA gene predicted gene, 40252
4930471C06Rik 4 127474848 to 127476840 1992 + lincRNA gene RIKEN cDNA 4930471C06 gene
Tssr39062 4 127522439 to 127522450 11 + TSS region transcription start site region 39062
D4Mit337 4 127524621 to 127524883 262 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 337
1700080G11Rik 4 127531622 to 127532885 1263 + lincRNA gene RIKEN cDNA 1700080G11 gene
Tssr43430 4 127534653 to 127534670 17 - TSS region transcription start site region 43430
Tssr43431 4 127534673 to 127534679 6 - TSS region transcription start site region 43431
A630031M04Rik 4 127545101 to 127570502 25401 + lincRNA gene RIKEN cDNA A630031M04 gene
Gm40255 4 127618745 to 127619853 1108 + lncRNA gene predicted gene, 40255
Cpgi14850 4 127620009 to 127620164 155 CpG island CpG island 14850
1700112K13Rik 4 127810638 to 127812173 1535 - lincRNA gene RIKEN cDNA 1700112K13 gene
Gm40256 4 127913883 to 127916424 2541 + lncRNA gene predicted gene, 40256
CK137956 4 127927592 to 127970951 43359 - protein coding gene cDNA sequence CK137956
Tssr39063 4 127968486 to 127968496 10 + TSS region transcription start site region 39063
Cpgi14851 4 127971208 to 127972003 795 CpG island CpG island 14851
Gm38571 4 127971645 to 127972450 805 + lncRNA gene predicted gene, 38571
Tssr43432 4 127971666 to 127971709 43 - TSS region transcription start site region 43432
Tssr43433 4 127971714 to 127971723 9 - TSS region transcription start site region 43433
Cpgi14852 4 127986502 to 127986988 486 CpG island CpG island 14852
Cpgi14853 4 127987339 to 127989354 2015 CpG island CpG island 14853
Csmd2 4 127987857 to 128567656 579799 + protein coding gene CUB and Sushi multiple domains 2
Tssr39064 4 127987888 to 127987910 22 + TSS region transcription start site region 39064