Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:12644356-14844599

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37985 4 12597388 to 12671843 74455 + unclassified gene predicted gene, 37985
n-R5s182 4 12812706 to 12812812 106 + rRNA gene nuclear encoded rRNA 5S 182
Tssr40954 4 12865470 to 12865472 2 - TSS region transcription start site region 40954
Cpgi14046 4 12906752 to 12907315 563 CpG island CpG island 14046
Tssr36508 4 12906785 to 12906817 32 + TSS region transcription start site region 36508
Triqk 4 12906837 to 12981485 74648 + protein coding gene triple QxxK/R motif containing
Tssr36509 4 12906840 to 12906881 41 + TSS region transcription start site region 36509
Gm42256 4 12981670 to 13025788 44118 + lncRNA gene predicted gene, 42256
Tssr36510 4 13037963 to 13037965 2 + TSS region transcription start site region 36510
Gm11820 4 13091351 to 13108752 17401 + lincRNA gene predicted gene 11820
Tssr36511 4 13096490 to 13096501 11 + TSS region transcription start site region 36511
Gm46847 4 13108782 to 13117434 8652 + lncRNA gene predicted gene, 46847
Gm26250 4 13266985 to 13267050 65 - miRNA gene predicted gene, 26250
Gm46880 4 13282641 to 13307489 24848 + lncRNA gene predicted gene, 46880
D4Mit100 4 13406590 to 13406771 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 100
Gm20032 4 13444763 to 13447593 2830 - pseudogene predicted gene, 20032
Gm11819 4 13444770 to 13445141 371 + pseudogene predicted gene 11819
Gm11826 4 13482755 to 13483192 437 - pseudogene predicted gene 11826
Tssr40955 4 13483227 to 13483237 10 - TSS region transcription start site region 40955
Gm46881 4 13515142 to 13519253 4111 - lncRNA gene predicted gene, 46881
Tssr36512 4 13517176 to 13517184 8 + TSS region transcription start site region 36512
Gm36488 4 13561170 to 13586612 25442 - lncRNA gene predicted gene, 36488
Gm36438 4 13585545 to 13595709 10164 + lncRNA gene predicted gene, 36438
Gm11825 4 13606034 to 13606769 735 + pseudogene predicted gene 11825
0610009K14Rik 4 13609844 to 13668729 58885 unclassified gene RIKEN cDNA 0610009K14 gene
Gm23162 4 13622643 to 13622763 120 - miRNA gene predicted gene, 23162
Cpgi14047 4 13742749 to 13744002 1253 CpG island CpG island 14047
Tssr36513 4 13742775 to 13742810 35 + TSS region transcription start site region 36513
Tssr36514 4 13743294 to 13743316 22 + TSS region transcription start site region 36514
Tssr36515 4 13743352 to 13743379 27 + TSS region transcription start site region 36515
Tssr36516 4 13743424 to 13743478 54 + TSS region transcription start site region 36516
Runx1t1 4 13743436 to 13893649 150213 + protein coding gene RUNX1 translocation partner 1
Tssr36517 4 13743479 to 13743510 31 + TSS region transcription start site region 36517
Tssr36518 4 13743514 to 13743534 20 + TSS region transcription start site region 36518
Cpgi14048 4 13744356 to 13744599 243 CpG island CpG island 14048
Cpgi14049 4 13750933 to 13751759 826 CpG island CpG island 14049
Tssr36519 4 13751335 to 13751358 23 + TSS region transcription start site region 36519
Tssr36520 4 13751367 to 13751392 25 + TSS region transcription start site region 36520
Tssr36521 4 13751537 to 13751557 20 + TSS region transcription start site region 36521
Tssr36522 4 13751576 to 13751592 16 + TSS region transcription start site region 36522
C130062D02Rik 4 13773906 to 13780278 6372 unclassified gene RIKEN cDNA C130062D02 gene
Tssr1122 4 13784749 to 13784791 42 + TSS region transcription start site region 1122
Cpgi14050 4 13784969 to 13785224 255 CpG island CpG island 14050
Tssr36523 4 13785021 to 13785071 50 + TSS region transcription start site region 36523
Tssr36524 4 13785081 to 13785120 39 + TSS region transcription start site region 36524
Tssr36525 4 13790749 to 13790750 1 + TSS region transcription start site region 36525
Tssr36526 4 13797059 to 13797064 5 + TSS region transcription start site region 36526
Tssr36527 4 13804137 to 13804158 21 + TSS region transcription start site region 36527
Tssr36528 4 13827940 to 13827949 9 + TSS region transcription start site region 36528
4833406L22Rik 4 13854781 to 13855749 968 unclassified gene RIKEN cDNA 4833406L22 gene
Tssr36529 4 13854804 to 13854808 4 + TSS region transcription start site region 36529
Tssr36530 4 13890079 to 13890082 3 + TSS region transcription start site region 36530
Tssr36531 4 13892204 to 13892212 8 + TSS region transcription start site region 36531
Gm11823 4 13919954 to 13995193 75239 - lincRNA gene predicted gene 11823
D4Mit18 4 14010457 to 14010682 225 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 18
Lyr2 4 14010457 to 63365441 49354984 QTL lymphoma resistance 2
Gm24068 4 14079809 to 14079940 131 - snoRNA gene predicted gene, 24068
Tssr36532 4 14169975 to 14169984 9 + TSS region transcription start site region 36532
Gm11824 4 14170066 to 14170911 845 + pseudogene predicted gene 11824
Gm2560 4 14212012 to 14291309 79297 - lncRNA gene predicted gene 2560
1700120G11Rik 4 14219496 to 14237450 17954 - lincRNA gene RIKEN cDNA 1700120G11 gene
Gm24908 4 14239618 to 14239744 126 + snoRNA gene predicted gene, 24908
Tssr36533 4 14240198 to 14240209 11 + TSS region transcription start site region 36533
Tssr36534 4 14284434 to 14284435 1 + TSS region transcription start site region 36534
Tssr36535 4 14433842 to 14433848 6 + TSS region transcription start site region 36535
Gm11836 4 14433891 to 14434331 440 + pseudogene predicted gene 11836
Slc26a7 4 14502430 to 14621805 119375 - protein coding gene solute carrier family 26, member 7
Tssr40956 4 14516367 to 14516378 11 - TSS region transcription start site region 40956
2310046G18Rik 4 14525863 to 14526196 333 unclassified gene RIKEN cDNA 2310046G18 gene
Tssr40957 4 14544214 to 14544231 17 - TSS region transcription start site region 40957
Tssr40958 4 14621494 to 14621506 12 - TSS region transcription start site region 40958
Tssr40959 4 14621770 to 14621786 16 - TSS region transcription start site region 40959
Tssr40960 4 14621792 to 14621797 5 - TSS region transcription start site region 40960
Tssr40961 4 14621808 to 14621819 11 - TSS region transcription start site region 40961
Lrrc69 4 14623620 to 14796060 172440 - protein coding gene leucine rich repeat containing 69
Gm11838 4 14766335 to 14766565 230 + pseudogene predicted gene 11838
Tssr40962 4 14796033 to 14796045 12 - TSS region transcription start site region 40962
Tssr40963 4 14796053 to 14796065 12 - TSS region transcription start site region 40963
Otud6b 4 14809505 to 14826587 17082 - protein coding gene OTU domain containing 6B
Cpgi14051 4 14825937 to 14826771 834 CpG island CpG island 14051
Tssr40964 4 14826390 to 14826447 57 - TSS region transcription start site region 40964
Tssr40965 4 14826544 to 14826555 11 - TSS region transcription start site region 40965
Tssr40966 4 14826582 to 14826589 7 - TSS region transcription start site region 40966
Tssr40967 4 14826597 to 14826606 9 - TSS region transcription start site region 40967
Mvwf3 4 117215009 to 14010457 -103204552 QTL modifier of von Willebrand factor 3