Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:126155012-126748583

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3d21 4 126150602 to 126163491 12889 - protein coding gene SH3 domain containing 21
Cpgi14809 4 126162219 to 126163441 1222 CpG island CpG island 14809
Tssr43348 4 126162619 to 126162637 18 - TSS region transcription start site region 43348
Tssr43349 4 126162644 to 126162655 11 - TSS region transcription start site region 43349
Tssr43350 4 126163275 to 126163296 21 - TSS region transcription start site region 43350
Tssr43351 4 126163307 to 126163332 25 - TSS region transcription start site region 43351
Tssr43352 4 126163470 to 126163486 16 - TSS region transcription start site region 43352
Thrap3 4 126164082 to 126202710 38628 - protein coding gene thyroid hormone receptor associated protein 3
Tssr43353 4 126168999 to 126169004 5 - TSS region transcription start site region 43353
Tssr43354 4 126195157 to 126195162 5 - TSS region transcription start site region 43354
Tssr43355 4 126198728 to 126198737 9 - TSS region transcription start site region 43355
Tssr43356 4 126201150 to 126201165 15 - TSS region transcription start site region 43356
Gm25323 4 126201175 to 126201277 102 - snRNA gene predicted gene, 25323
Cpgi14810 4 126202202 to 126203213 1011 CpG island CpG island 14810
Tssr43357 4 126202335 to 126202401 66 - TSS region transcription start site region 43357
Tssr43358 4 126202583 to 126202698 115 - TSS region transcription start site region 43358
Tssr43359 4 126202757 to 126202762 5 - TSS region transcription start site region 43359
D730050C22Rik 4 126202877 to 126203923 1046 unclassified gene RIKEN cDNA D730050C22 gene
Tssr38983 4 126202995 to 126203012 17 + TSS region transcription start site region 38983
Tssr38984 4 126227622 to 126227650 28 + TSS region transcription start site region 38984
Map7d1 4 126232167 to 126256343 24176 - protein coding gene MAP7 domain containing 1
Tssr43360 4 126236584 to 126236632 48 - TSS region transcription start site region 43360
Cpgi14811 4 126236604 to 126237416 812 CpG island CpG island 14811
Tssr43361 4 126237805 to 126237845 40 - TSS region transcription start site region 43361
Tssr43362 4 126242056 to 126242077 21 - TSS region transcription start site region 43362
Tssr43363 4 126242081 to 126242096 15 - TSS region transcription start site region 43363
Tssr43364 4 126242115 to 126242126 11 - TSS region transcription start site region 43364
Tssr43365 4 126242178 to 126242193 15 - TSS region transcription start site region 43365
Tssr43366 4 126242258 to 126242286 28 - TSS region transcription start site region 43366
Tssr43367 4 126242292 to 126242330 38 - TSS region transcription start site region 43367
Tssr43368 4 126249497 to 126249502 5 - TSS region transcription start site region 43368
Cpgi14812 4 126255321 to 126256705 1384 CpG island CpG island 14812
Tssr43369 4 126256073 to 126256101 28 - TSS region transcription start site region 43369
Tssr43370 4 126256226 to 126256370 144 - TSS region transcription start site region 43370
Tssr38985 4 126256656 to 126256662 6 + TSS region transcription start site region 38985
Tssr38986 4 126260384 to 126260390 6 + TSS region transcription start site region 38986
Cpgi14813 4 126262090 to 126262785 695 CpG island CpG island 14813
Tssr38987 4 126262369 to 126262380 11 + TSS region transcription start site region 38987
Tssr38988 4 126262382 to 126262402 20 + TSS region transcription start site region 38988
Trappc3 4 126262405 to 126275883 13478 + protein coding gene trafficking protein particle complex 3
Tssr38989 4 126273958 to 126273968 10 + TSS region transcription start site region 38989
Tssr38990 4 126274015 to 126274027 12 + TSS region transcription start site region 38990
Cpgi14814 4 126286312 to 126287231 919 CpG island CpG island 14814
Tssr38991 4 126286765 to 126286770 5 + TSS region transcription start site region 38991
Tssr38992 4 126286775 to 126286778 3 + TSS region transcription start site region 38992
Tssr38993 4 126286779 to 126286790 11 + TSS region transcription start site region 38993
Tssr38994 4 126286792 to 126286803 11 + TSS region transcription start site region 38994
Col8a2 4 126286794 to 126314330 27536 + protein coding gene collagen, type VIII, alpha 2
Tssr38995 4 126286812 to 126286827 15 + TSS region transcription start site region 38995
Tssr38996 4 126296171 to 126296174 3 + TSS region transcription start site region 38996
Gm8505 4 126296173 to 126297595 1422 unclassified gene predicted gene 8505
Cpgi14815 4 126296682 to 126297229 547 CpG island CpG island 14815
Cpgi14816 4 126300780 to 126302214 1434 CpG island CpG island 14816
Tssr43371 4 126301081 to 126301095 14 - TSS region transcription start site region 43371
Tssr43372 4 126301104 to 126301113 9 - TSS region transcription start site region 43372
Tssr38997 4 126314135 to 126314139 4 + TSS region transcription start site region 38997
Adprhl2 4 126316351 to 126321703 5352 - protein coding gene ADP-ribosylhydrolase like 2
Cpgi14817 4 126320935 to 126322439 1504 CpG island CpG island 14817
Tssr38998 4 126321145 to 126321158 13 + TSS region transcription start site region 38998
Tssr43373 4 126321669 to 126321704 35 - TSS region transcription start site region 43373
Tekt2 4 126322121 to 126325688 3567 - protein coding gene tektin 2
Gm12945 4 126323599 to 126325237 1638 + unclassified non-coding RNA gene predicted gene 12945
Tssr43374 4 126323704 to 126323737 33 - TSS region transcription start site region 43374
Cpgi14818 4 126324834 to 126324987 153 CpG island CpG island 14818
Tssr43375 4 126325641 to 126325653 12 - TSS region transcription start site region 43375
Cpgi14819 4 126325646 to 126325815 169 CpG island CpG island 14819
Tssr43376 4 126325672 to 126325707 35 - TSS region transcription start site region 43376
Tssr43377 4 126325711 to 126325715 4 - TSS region transcription start site region 43377
Ago3 4 126331704 to 126429556 97852 - protein coding gene argonaute RISC catalytic subunit 3
Tssr43378 4 126338612 to 126338616 4 - TSS region transcription start site region 43378
Tssr38999 4 126412816 to 126412824 8 + TSS region transcription start site region 38999
Cpgi14820 4 126429045 to 126430109 1064 CpG island CpG island 14820
Tssr43379 4 126429405 to 126429416 11 - TSS region transcription start site region 43379
Tssr43380 4 126429421 to 126429474 53 - TSS region transcription start site region 43380
Tssr43381 4 126429501 to 126429513 12 - TSS region transcription start site region 43381
Tssr39000 4 126429700 to 126429763 63 + TSS region transcription start site region 39000
Ago1 4 126435012 to 126468583 33571 - protein coding gene argonaute RISC catalytic subunit 1
Tssr43382 4 126440782 to 126440795 13 - TSS region transcription start site region 43382
Tssr39001 4 126466115 to 126466162 47 + TSS region transcription start site region 39001
Cpgi14821 4 126467816 to 126469165 1349 CpG island CpG island 14821
Tssr43383 4 126468580 to 126468653 73 - TSS region transcription start site region 43383
Tssr43384 4 126468696 to 126468705 9 - TSS region transcription start site region 43384
Gm12929 4 126476302 to 126476671 369 - pseudogene predicted gene 12929
Gm12928 4 126476727 to 126477299 572 - pseudogene predicted gene 12928
Ago4 4 126489541 to 126533472 43931 - protein coding gene argonaute RISC catalytic subunit 4
Tssr1299 4 126495847 to 126495849 2 + TSS region transcription start site region 1299
Gm12935 4 126521669 to 126522087 418 + pseudogene predicted gene 12935
Gm12934 4 126524330 to 126524672 342 - pseudogene predicted gene 12934
Cpgi14822 4 126532760 to 126534075 1315 CpG island CpG island 14822
Tssr43385 4 126533273 to 126533321 48 - TSS region transcription start site region 43385
Tssr43386 4 126533397 to 126533423 26 - TSS region transcription start site region 43386
Tssr43387 4 126533441 to 126533479 38 - TSS region transcription start site region 43387
Tssr43388 4 126533561 to 126533613 52 - TSS region transcription start site region 43388
Cpgi14823 4 126556714 to 126557538 824 CpG island CpG island 14823
Clspn 4 126556935 to 126593903 36968 + protein coding gene claspin
Tssr39002 4 126556956 to 126556957 1 + TSS region transcription start site region 39002
Tssr39003 4 126556963 to 126556966 3 + TSS region transcription start site region 39003
Tssr39004 4 126556971 to 126556992 21 + TSS region transcription start site region 39004
Tssr39005 4 126556994 to 126557020 26 + TSS region transcription start site region 39005
Tssr39006 4 126557039 to 126557048 9 + TSS region transcription start site region 39006
Mir7119 4 126559860 to 126559918 58 + miRNA gene microRNA 7119
Gm12936 4 126584509 to 126584809 300 - pseudogene predicted gene 12936
Cpgi14824 4 126609511 to 126610191 680 CpG island CpG island 14824
Tssr39007 4 126609819 to 126609896 77 + TSS region transcription start site region 39007
5730409E04Rik 4 126609854 to 126614371 4517 + protein coding gene RIKEN cDNA 5730409E04Rik gene
Tssr39008 4 126609899 to 126609911 12 + TSS region transcription start site region 39008
Tssr39009 4 126609934 to 126609941 7 + TSS region transcription start site region 39009
Tssr39010 4 126609945 to 126609952 7 + TSS region transcription start site region 39010
Tssr39011 4 126613037 to 126613072 35 + TSS region transcription start site region 39011
Gm40250 4 126614367 to 126614787 420 - lncRNA gene predicted gene, 40250
Gm46870 4 126616374 to 126620297 3923 - lncRNA gene predicted gene, 46870
Cpgi14825 4 126619838 to 126620378 540 CpG island CpG island 14825
Tssr39012 4 126665226 to 126665227 1 + TSS region transcription start site region 39012
Gm12933 4 126665254 to 126666125 871 + pseudogene predicted gene 12933
Cpgi14826 4 126677420 to 126677952 532 CpG island CpG island 14826
Psmb2 4 126677634 to 126709715 32081 + protein coding gene proteasome (prosome, macropain) subunit, beta type 2
Tssr39013 4 126677641 to 126677646 5 + TSS region transcription start site region 39013
Tssr39014 4 126677659 to 126677673 14 + TSS region transcription start site region 39014
Tssr39015 4 126677678 to 126677689 11 + TSS region transcription start site region 39015
Tssr39016 4 126677696 to 126677702 6 + TSS region transcription start site region 39016
E330021A06Rik 4 126699535 to 126704028 4493 unclassified gene RIKEN cDNA E330021A06 gene
Tssr39017 4 126706051 to 126706083 32 + TSS region transcription start site region 39017
Tfap2e 4 126716006 to 126736240 20234 - protein coding gene transcription factor AP-2, epsilon
Cpgi14827 4 126732247 to 126732914 667 CpG island CpG island 14827
Cpgi14828 4 126734400 to 126736434 2034 CpG island CpG island 14828
Tssr43389 4 126736236 to 126736245 9 - TSS region transcription start site region 43389
Ncdn 4 126743750 to 126753438 9688 - protein coding gene neurochondrin
Tssr43390 4 126744110 to 126744121 11 - TSS region transcription start site region 43390
Tssr43391 4 126744122 to 126744137 15 - TSS region transcription start site region 43391
Tssr43392 4 126744230 to 126744244 14 - TSS region transcription start site region 43392
Cpgi14829 4 126744862 to 126745124 262 CpG island CpG island 14829