Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:125499701-126549737

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq6 4 111000000 to 126000000 15000000 QTL body mass index QTL 6
Grik3 4 125490700 to 125714173 223473 + protein coding gene glutamate receptor, ionotropic, kainate 3
Tssr38949 4 125504076 to 125504078 2 + TSS region transcription start site region 38949
Ftl2-ps 4 125504288 to 125504839 551 + pseudogene ferritin light polypeptide 2, pseudogene
Tssr38950 4 125504634 to 125504653 19 + TSS region transcription start site region 38950
Mir692-2 4 125504749 to 125504857 108 + miRNA gene microRNA 692-2
Gm32807 4 125550236 to 125556079 5843 - lncRNA gene predicted gene, 32807
Rbc1 4 125583899 to 125583899 0 QTL red blood cell count 1
Hgb1 4 125583899 to 125583899 0 QTL hemoglobin 1
Hct1 4 125583899 to 125583899 0 QTL hematocrit 1
D4Dcr24 4 125597011 to 125597107 96 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 24
Tssr38951 4 125607630 to 125607633 3 + TSS region transcription start site region 38951
Tssr38952 4 125609946 to 125609962 16 + TSS region transcription start site region 38952
D4Mit280 4 125616150 to 125616274 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 280
Cpgi14802 4 125729513 to 125729965 452 CpG island CpG island 14802
D4Mit249 4 125763908 to 125764139 231 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 249
Cpgi14803 4 125814419 to 125814626 207 CpG island CpG island 14803
Gm40249 4 125829719 to 125836808 7089 - lncRNA gene predicted gene, 40249
Tssr38953 4 125836910 to 125836940 30 + TSS region transcription start site region 38953
2610028E06Rik 4 125887851 to 125922310 34459 - lincRNA gene RIKEN cDNA 2610028E06 gene
Tssr38954 4 125948131 to 125948135 4 + TSS region transcription start site region 38954
Tssr38955 4 125949982 to 125950006 24 + TSS region transcription start site region 38955
Gm32908 4 126011163 to 126024517 13354 - lncRNA gene predicted gene, 32908
Tssr38956 4 126017906 to 126017914 8 + TSS region transcription start site region 38956
Tssr38957 4 126018222 to 126018229 7 + TSS region transcription start site region 38957
Tssr38958 4 126023420 to 126023431 11 + TSS region transcription start site region 38958
Tssr38959 4 126023449 to 126023470 21 + TSS region transcription start site region 38959
Tssr38960 4 126023483 to 126023494 11 + TSS region transcription start site region 38960
Tssr38961 4 126024506 to 126024550 44 + TSS region transcription start site region 38961
Csf3r 4 126024550 to 126044440 19890 + protein coding gene colony stimulating factor 3 receptor (granulocyte)
Tssr38962 4 126024701 to 126024737 36 + TSS region transcription start site region 38962
Tssr38963 4 126024824 to 126024837 13 + TSS region transcription start site region 38963
Tssr38964 4 126025520 to 126025531 11 + TSS region transcription start site region 38964
Tssr38965 4 126031795 to 126031816 21 + TSS region transcription start site region 38965
Tssr38966 4 126035175 to 126035214 39 + TSS region transcription start site region 38966
Cpgi14804 4 126046787 to 126047655 868 CpG island CpG island 14804
Tssr38967 4 126046903 to 126047023 120 + TSS region transcription start site region 38967
Mrps15 4 126046925 to 126055532 8607 + protein coding gene mitochondrial ribosomal protein S15
Tssr38968 4 126047026 to 126047037 11 + TSS region transcription start site region 38968
Tssr38969 4 126047157 to 126047168 11 + TSS region transcription start site region 38969
Tssr1296 4 126047207 to 126047225 18 + TSS region transcription start site region 1296
Tssr38970 4 126054950 to 126054971 21 + TSS region transcription start site region 38970
Tssr38971 4 126057950 to 126057954 4 + TSS region transcription start site region 38971
Cpgi14805 4 126058049 to 126058912 863 CpG island CpG island 14805
Tssr43347 4 126058408 to 126058436 28 - TSS region transcription start site region 43347
Tssr38972 4 126058557 to 126058613 56 + TSS region transcription start site region 38972
Oscp1 4 126058565 to 126092195 33630 + protein coding gene organic solute carrier partner 1
Tssr38973 4 126058615 to 126058624 9 + TSS region transcription start site region 38973
Tssr1297 4 126058630 to 126058635 5 + TSS region transcription start site region 1297
Tssr38974 4 126058651 to 126058660 9 + TSS region transcription start site region 38974
Rpl28-ps3 4 126069867 to 126070259 392 - pseudogene ribosomal protein L28, pseudogene 3
Cpgi14806 4 126096431 to 126096944 513 CpG island CpG island 14806
Lsm10 4 126096623 to 126098584 1961 + protein coding gene U7 snRNP-specific Sm-like protein LSM10
Tssr38975 4 126096666 to 126096708 42 + TSS region transcription start site region 38975
Tssr38976 4 126096710 to 126096728 18 + TSS region transcription start site region 38976
Tssr38977 4 126096750 to 126096767 17 + TSS region transcription start site region 38977
1520401O13Rik 4 126100490 to 126104658 4168 unclassified gene RIKEN cDNA 1520401O13 gene
Tssr1298 4 126103216 to 126103239 23 - TSS region transcription start site region 1298
Cpgi14807 4 126103705 to 126104839 1134 CpG island CpG island 14807
Tssr38978 4 126103940 to 126104020 80 + TSS region transcription start site region 38978
Stk40 4 126103957 to 126141029 37072 + protein coding gene serine/threonine kinase 40
Tssr38979 4 126117154 to 126117158 4 + TSS region transcription start site region 38979
Tssr38980 4 126139345 to 126139362 17 + TSS region transcription start site region 38980
Tssr38981 4 126140829 to 126140850 21 + TSS region transcription start site region 38981
Gm12946 4 126145979 to 126147735 1756 + antisense lncRNA gene predicted gene 12946
Eva1b 4 126147744 to 126149875 2131 + protein coding gene eva-1 homolog B (C. elegans)
Cpgi14808 4 126148157 to 126149697 1540 CpG island CpG island 14808
Tssr38982 4 126148457 to 126148527 70 + TSS region transcription start site region 38982
Sh3d21 4 126150602 to 126163491 12889 - protein coding gene SH3 domain containing 21
Cpgi14809 4 126162219 to 126163441 1222 CpG island CpG island 14809
Tssr43348 4 126162619 to 126162637 18 - TSS region transcription start site region 43348
Tssr43349 4 126162644 to 126162655 11 - TSS region transcription start site region 43349
Tssr43350 4 126163275 to 126163296 21 - TSS region transcription start site region 43350
Tssr43351 4 126163307 to 126163332 25 - TSS region transcription start site region 43351
Tssr43352 4 126163470 to 126163486 16 - TSS region transcription start site region 43352
Thrap3 4 126164082 to 126202710 38628 - protein coding gene thyroid hormone receptor associated protein 3
Tssr43353 4 126168999 to 126169004 5 - TSS region transcription start site region 43353
Tssr43354 4 126195157 to 126195162 5 - TSS region transcription start site region 43354
Tssr43355 4 126198728 to 126198737 9 - TSS region transcription start site region 43355
Tssr43356 4 126201150 to 126201165 15 - TSS region transcription start site region 43356
Gm25323 4 126201175 to 126201277 102 - snRNA gene predicted gene, 25323
Cpgi14810 4 126202202 to 126203213 1011 CpG island CpG island 14810
Tssr43357 4 126202335 to 126202401 66 - TSS region transcription start site region 43357
Tssr43358 4 126202583 to 126202698 115 - TSS region transcription start site region 43358
Tssr43359 4 126202757 to 126202762 5 - TSS region transcription start site region 43359
D730050C22Rik 4 126202877 to 126203923 1046 unclassified gene RIKEN cDNA D730050C22 gene
Tssr38983 4 126202995 to 126203012 17 + TSS region transcription start site region 38983
Tssr38984 4 126227622 to 126227650 28 + TSS region transcription start site region 38984
Map7d1 4 126232167 to 126256343 24176 - protein coding gene MAP7 domain containing 1
Tssr43360 4 126236584 to 126236632 48 - TSS region transcription start site region 43360
Cpgi14811 4 126236604 to 126237416 812 CpG island CpG island 14811
Tssr43361 4 126237805 to 126237845 40 - TSS region transcription start site region 43361
Tssr43362 4 126242056 to 126242077 21 - TSS region transcription start site region 43362
Tssr43363 4 126242081 to 126242096 15 - TSS region transcription start site region 43363
Tssr43364 4 126242115 to 126242126 11 - TSS region transcription start site region 43364
Tssr43365 4 126242178 to 126242193 15 - TSS region transcription start site region 43365
Tssr43366 4 126242258 to 126242286 28 - TSS region transcription start site region 43366
Tssr43367 4 126242292 to 126242330 38 - TSS region transcription start site region 43367
Tssr43368 4 126249497 to 126249502 5 - TSS region transcription start site region 43368
Cpgi14812 4 126255321 to 126256705 1384 CpG island CpG island 14812
Tssr43369 4 126256073 to 126256101 28 - TSS region transcription start site region 43369
Tssr43370 4 126256226 to 126256370 144 - TSS region transcription start site region 43370
Tssr38985 4 126256656 to 126256662 6 + TSS region transcription start site region 38985
Tssr38986 4 126260384 to 126260390 6 + TSS region transcription start site region 38986
Cpgi14813 4 126262090 to 126262785 695 CpG island CpG island 14813
Tssr38987 4 126262369 to 126262380 11 + TSS region transcription start site region 38987
Tssr38988 4 126262382 to 126262402 20 + TSS region transcription start site region 38988
Trappc3 4 126262405 to 126275883 13478 + protein coding gene trafficking protein particle complex 3
Tssr38989 4 126273958 to 126273968 10 + TSS region transcription start site region 38989
Tssr38990 4 126274015 to 126274027 12 + TSS region transcription start site region 38990
Cpgi14814 4 126286312 to 126287231 919 CpG island CpG island 14814
Tssr38991 4 126286765 to 126286770 5 + TSS region transcription start site region 38991
Tssr38992 4 126286775 to 126286778 3 + TSS region transcription start site region 38992
Tssr38993 4 126286779 to 126286790 11 + TSS region transcription start site region 38993
Tssr38994 4 126286792 to 126286803 11 + TSS region transcription start site region 38994
Col8a2 4 126286794 to 126314330 27536 + protein coding gene collagen, type VIII, alpha 2
Tssr38995 4 126286812 to 126286827 15 + TSS region transcription start site region 38995
Tssr38996 4 126296171 to 126296174 3 + TSS region transcription start site region 38996
Gm8505 4 126296173 to 126297595 1422 unclassified gene predicted gene 8505
Cpgi14815 4 126296682 to 126297229 547 CpG island CpG island 14815
Cpgi14816 4 126300780 to 126302214 1434 CpG island CpG island 14816
Tssr43371 4 126301081 to 126301095 14 - TSS region transcription start site region 43371
Tssr43372 4 126301104 to 126301113 9 - TSS region transcription start site region 43372
Tssr38997 4 126314135 to 126314139 4 + TSS region transcription start site region 38997
Adprhl2 4 126316351 to 126321703 5352 - protein coding gene ADP-ribosylhydrolase like 2
Cpgi14817 4 126320935 to 126322439 1504 CpG island CpG island 14817
Tssr38998 4 126321145 to 126321158 13 + TSS region transcription start site region 38998
Tssr43373 4 126321669 to 126321704 35 - TSS region transcription start site region 43373
Tekt2 4 126322121 to 126325688 3567 - protein coding gene tektin 2
Gm12945 4 126323599 to 126325237 1638 + unclassified non-coding RNA gene predicted gene 12945
Tssr43374 4 126323704 to 126323737 33 - TSS region transcription start site region 43374
Cpgi14818 4 126324834 to 126324987 153 CpG island CpG island 14818
Tssr43375 4 126325641 to 126325653 12 - TSS region transcription start site region 43375
Cpgi14819 4 126325646 to 126325815 169 CpG island CpG island 14819
Tssr43376 4 126325672 to 126325707 35 - TSS region transcription start site region 43376
Tssr43377 4 126325711 to 126325715 4 - TSS region transcription start site region 43377
Ago3 4 126331704 to 126429556 97852 - protein coding gene argonaute RISC catalytic subunit 3
Tssr43378 4 126338612 to 126338616 4 - TSS region transcription start site region 43378
Tssr38999 4 126412816 to 126412824 8 + TSS region transcription start site region 38999
Cpgi14820 4 126429045 to 126430109 1064 CpG island CpG island 14820
Tssr43379 4 126429405 to 126429416 11 - TSS region transcription start site region 43379
Tssr43380 4 126429421 to 126429474 53 - TSS region transcription start site region 43380
Tssr43381 4 126429501 to 126429513 12 - TSS region transcription start site region 43381
Tssr39000 4 126429700 to 126429763 63 + TSS region transcription start site region 39000
Ago1 4 126435012 to 126468583 33571 - protein coding gene argonaute RISC catalytic subunit 1
Tssr43382 4 126440782 to 126440795 13 - TSS region transcription start site region 43382
Tssr39001 4 126466115 to 126466162 47 + TSS region transcription start site region 39001
Cpgi14821 4 126467816 to 126469165 1349 CpG island CpG island 14821
Tssr43383 4 126468580 to 126468653 73 - TSS region transcription start site region 43383
Tssr43384 4 126468696 to 126468705 9 - TSS region transcription start site region 43384
Gm12929 4 126476302 to 126476671 369 - pseudogene predicted gene 12929
Gm12928 4 126476727 to 126477299 572 - pseudogene predicted gene 12928
Ago4 4 126489541 to 126533472 43931 - protein coding gene argonaute RISC catalytic subunit 4
Tssr1299 4 126495847 to 126495849 2 + TSS region transcription start site region 1299
Gm12935 4 126521669 to 126522087 418 + pseudogene predicted gene 12935
Gm12934 4 126524330 to 126524672 342 - pseudogene predicted gene 12934
Cpgi14822 4 126532760 to 126534075 1315 CpG island CpG island 14822
Tssr43385 4 126533273 to 126533321 48 - TSS region transcription start site region 43385
Tssr43386 4 126533397 to 126533423 26 - TSS region transcription start site region 43386
Tssr43387 4 126533441 to 126533479 38 - TSS region transcription start site region 43387
Tssr43388 4 126533561 to 126533613 52 - TSS region transcription start site region 43388