Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:125022757-127382762

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397 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq6 4 111000000 to 126000000 15000000 QTL body mass index QTL 6
Cpgi14795 4 125029821 to 125030501 680 CpG island CpG island 14795
Gnl2 4 125029989 to 125055382 25393 + protein coding gene guanine nucleotide binding protein-like 2 (nucleolar)
Tssr38928 4 125030006 to 125030070 64 + TSS region transcription start site region 38928
Tssr38929 4 125030072 to 125030084 12 + TSS region transcription start site region 38929
Tssr38930 4 125052749 to 125052778 29 + TSS region transcription start site region 38930
Dnali1 4 125055339 to 125065657 10318 - protein coding gene dynein, axonemal, light intermediate polypeptide 1
Tssr43330 4 125065603 to 125065672 69 - TSS region transcription start site region 43330
Cpgi14796 4 125066340 to 125067270 930 CpG island CpG island 14796
Tssr43331 4 125066585 to 125066596 11 - TSS region transcription start site region 43331
Tssr43332 4 125066634 to 125066648 14 - TSS region transcription start site region 43332
Tssr38931 4 125066672 to 125066715 43 + TSS region transcription start site region 38931
Snip1 4 125066672 to 125074042 7370 + protein coding gene Smad nuclear interacting protein 1
Tssr38932 4 125066723 to 125066732 9 + TSS region transcription start site region 38932
Gm18480 4 125075509 to 125076480 971 + pseudogene predicted gene, 18480
Gm12932 4 125082857 to 125084947 2090 - antisense lncRNA gene predicted gene 12932
Cpgi14797 4 125084455 to 125085816 1361 CpG island CpG island 14797
Tssr38933 4 125085111 to 125085122 11 + TSS region transcription start site region 38933
Meaf6 4 125085132 to 125110070 24938 + protein coding gene MYST/Esa1-associated factor 6
Tssr38934 4 125085136 to 125085173 37 + TSS region transcription start site region 38934
Tssr38935 4 125109601 to 125109631 30 + TSS region transcription start site region 38935
Tssr43333 4 125116671 to 125116714 43 - TSS region transcription start site region 43333
Zc3h12a 4 125118423 to 125127840 9417 - protein coding gene zinc finger CCCH type containing 12A
Tssr43334 4 125122460 to 125122469 9 - TSS region transcription start site region 43334
Tssr43335 4 125122505 to 125122532 27 - TSS region transcription start site region 43335
Tssr43336 4 125122539 to 125122563 24 - TSS region transcription start site region 43336
Tssr43337 4 125122577 to 125122588 11 - TSS region transcription start site region 43337
Tssr43338 4 125124948 to 125124961 13 - TSS region transcription start site region 43338
Tssr38936 4 125125000 to 125125021 21 + TSS region transcription start site region 38936
Tssr43339 4 125125021 to 125125036 15 - TSS region transcription start site region 43339
Tssr38937 4 125125109 to 125125143 34 + TSS region transcription start site region 38937
Tssr43340 4 125127150 to 125127171 21 - TSS region transcription start site region 43340
Cpgi14798 4 125127188 to 125128191 1003 CpG island CpG island 14798
Tssr43341 4 125127286 to 125127307 21 - TSS region transcription start site region 43341
Tssr38938 4 125127451 to 125127463 12 + TSS region transcription start site region 38938
Tssr43342 4 125127817 to 125127843 26 - TSS region transcription start site region 43342
Tssr43343 4 125127848 to 125127891 43 - TSS region transcription start site region 43343
Gm40246 4 125137545 to 125147719 10174 - lncRNA gene predicted gene, 40246
Gm32611 4 125145206 to 125290415 145209 + protein coding gene predicted gene, 32611
Tssr1294 4 125145527 to 125145545 18 + TSS region transcription start site region 1294
Tssr38939 4 125146225 to 125146237 12 + TSS region transcription start site region 38939
Tssr1295 4 125146254 to 125146270 16 + TSS region transcription start site region 1295
Gm40245 4 125150043 to 125187052 37009 + lncRNA gene predicted gene, 40245
Tssr38940 4 125150790 to 125150817 27 + TSS region transcription start site region 38940
Tssr38941 4 125158285 to 125158320 35 + TSS region transcription start site region 38941
Cpgi14799 4 125160441 to 125160699 258 CpG island CpG island 14799
Tssr38942 4 125176521 to 125176541 20 + TSS region transcription start site region 38942
Tssr38943 4 125176551 to 125176561 10 + TSS region transcription start site region 38943
Tssr38944 4 125176571 to 125176598 27 + TSS region transcription start site region 38944
D4Mit125 4 125180353 to 125180498 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 125
Gm40244 4 125218444 to 125219892 1448 + lncRNA gene predicted gene, 40244
1700041M05Rik 4 125228597 to 125242052 13455 + lincRNA gene RIKEN cDNA 1700041M05 gene
Cpgi14800 4 125275344 to 125275554 210 CpG island CpG island 14800
D4Mit335 4 125281408 to 125281529 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 335
Gm46869 4 125290536 to 125301544 11008 + lncRNA gene predicted gene, 46869
Gm32696 4 125312310 to 125313514 1204 - lncRNA gene predicted gene, 32696
D4Mit338 4 125340410 to 125340510 100 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 338
D4Dcr23 4 125340410 to 125340505 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 23
Tssr43344 4 125346951 to 125346961 10 - TSS region transcription start site region 43344
Tssr43345 4 125346963 to 125346975 12 - TSS region transcription start site region 43345
Tssr43346 4 125346986 to 125346996 10 - TSS region transcription start site region 43346
Gm40247 4 125381681 to 125394495 12814 + lncRNA gene predicted gene, 40247
Tssr38945 4 125445355 to 125445358 3 + TSS region transcription start site region 38945
Gm32756 4 125451074 to 125477201 26127 + lncRNA gene predicted gene, 32756
Cpgi14801 4 125489659 to 125492086 2427 CpG island CpG island 14801
Tssr38946 4 125490408 to 125490456 48 + TSS region transcription start site region 38946
Tssr38947 4 125490468 to 125490493 25 + TSS region transcription start site region 38947
Tssr38948 4 125490688 to 125490704 16 + TSS region transcription start site region 38948
Grik3 4 125490700 to 125714173 223473 + protein coding gene glutamate receptor, ionotropic, kainate 3
Tssr38949 4 125504076 to 125504078 2 + TSS region transcription start site region 38949
Ftl2-ps 4 125504288 to 125504839 551 + pseudogene ferritin light polypeptide 2, pseudogene
Tssr38950 4 125504634 to 125504653 19 + TSS region transcription start site region 38950
Mir692-2 4 125504749 to 125504857 108 + miRNA gene microRNA 692-2
Gm32807 4 125550236 to 125556079 5843 - lncRNA gene predicted gene, 32807
Hct1 4 125583899 to 125583899 0 QTL hematocrit 1
Hgb1 4 125583899 to 125583899 0 QTL hemoglobin 1
Rbc1 4 125583899 to 125583899 0 QTL red blood cell count 1
D4Dcr24 4 125597011 to 125597107 96 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 24
Tssr38951 4 125607630 to 125607633 3 + TSS region transcription start site region 38951
Tssr38952 4 125609946 to 125609962 16 + TSS region transcription start site region 38952
D4Mit280 4 125616150 to 125616274 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 280
Cpgi14802 4 125729513 to 125729965 452 CpG island CpG island 14802
D4Mit249 4 125763908 to 125764139 231 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 249
Cpgi14803 4 125814419 to 125814626 207 CpG island CpG island 14803
Gm40249 4 125829719 to 125836808 7089 - lncRNA gene predicted gene, 40249
Tssr38953 4 125836910 to 125836940 30 + TSS region transcription start site region 38953
2610028E06Rik 4 125887851 to 125922310 34459 - lincRNA gene RIKEN cDNA 2610028E06 gene
Tssr38954 4 125948131 to 125948135 4 + TSS region transcription start site region 38954
Tssr38955 4 125949982 to 125950006 24 + TSS region transcription start site region 38955
Gm32908 4 126011163 to 126024517 13354 - lncRNA gene predicted gene, 32908
Tssr38956 4 126017906 to 126017914 8 + TSS region transcription start site region 38956
Tssr38957 4 126018222 to 126018229 7 + TSS region transcription start site region 38957
Tssr38958 4 126023420 to 126023431 11 + TSS region transcription start site region 38958
Tssr38959 4 126023449 to 126023470 21 + TSS region transcription start site region 38959
Tssr38960 4 126023483 to 126023494 11 + TSS region transcription start site region 38960
Tssr38961 4 126024506 to 126024550 44 + TSS region transcription start site region 38961
Csf3r 4 126024550 to 126044440 19890 + protein coding gene colony stimulating factor 3 receptor (granulocyte)
Tssr38962 4 126024701 to 126024737 36 + TSS region transcription start site region 38962
Tssr38963 4 126024824 to 126024837 13 + TSS region transcription start site region 38963
Tssr38964 4 126025520 to 126025531 11 + TSS region transcription start site region 38964
Tssr38965 4 126031795 to 126031816 21 + TSS region transcription start site region 38965
Tssr38966 4 126035175 to 126035214 39 + TSS region transcription start site region 38966
Cpgi14804 4 126046787 to 126047655 868 CpG island CpG island 14804
Tssr38967 4 126046903 to 126047023 120 + TSS region transcription start site region 38967
Mrps15 4 126046925 to 126055532 8607 + protein coding gene mitochondrial ribosomal protein S15
Tssr38968 4 126047026 to 126047037 11 + TSS region transcription start site region 38968
Tssr38969 4 126047157 to 126047168 11 + TSS region transcription start site region 38969
Tssr1296 4 126047207 to 126047225 18 + TSS region transcription start site region 1296
Tssr38970 4 126054950 to 126054971 21 + TSS region transcription start site region 38970
Tssr38971 4 126057950 to 126057954 4 + TSS region transcription start site region 38971
Cpgi14805 4 126058049 to 126058912 863 CpG island CpG island 14805
Tssr43347 4 126058408 to 126058436 28 - TSS region transcription start site region 43347
Tssr38972 4 126058557 to 126058613 56 + TSS region transcription start site region 38972
Oscp1 4 126058565 to 126092195 33630 + protein coding gene organic solute carrier partner 1
Tssr38973 4 126058615 to 126058624 9 + TSS region transcription start site region 38973
Tssr1297 4 126058630 to 126058635 5 + TSS region transcription start site region 1297
Tssr38974 4 126058651 to 126058660 9 + TSS region transcription start site region 38974
Rpl28-ps3 4 126069867 to 126070259 392 - pseudogene ribosomal protein L28, pseudogene 3
Cpgi14806 4 126096431 to 126096944 513 CpG island CpG island 14806
Lsm10 4 126096623 to 126098584 1961 + protein coding gene U7 snRNP-specific Sm-like protein LSM10
Tssr38975 4 126096666 to 126096708 42 + TSS region transcription start site region 38975
Tssr38976 4 126096710 to 126096728 18 + TSS region transcription start site region 38976
Tssr38977 4 126096750 to 126096767 17 + TSS region transcription start site region 38977
1520401O13Rik 4 126100490 to 126104658 4168 unclassified gene RIKEN cDNA 1520401O13 gene
Tssr1298 4 126103216 to 126103239 23 - TSS region transcription start site region 1298
Cpgi14807 4 126103705 to 126104839 1134 CpG island CpG island 14807
Tssr38978 4 126103940 to 126104020 80 + TSS region transcription start site region 38978
Stk40 4 126103957 to 126141029 37072 + protein coding gene serine/threonine kinase 40
Tssr38979 4 126117154 to 126117158 4 + TSS region transcription start site region 38979
Tssr38980 4 126139345 to 126139362 17 + TSS region transcription start site region 38980
Tssr38981 4 126140829 to 126140850 21 + TSS region transcription start site region 38981
Gm12946 4 126145979 to 126147735 1756 + antisense lncRNA gene predicted gene 12946
Eva1b 4 126147744 to 126149875 2131 + protein coding gene eva-1 homolog B (C. elegans)
Cpgi14808 4 126148157 to 126149697 1540 CpG island CpG island 14808
Tssr38982 4 126148457 to 126148527 70 + TSS region transcription start site region 38982
Sh3d21 4 126150602 to 126163491 12889 - protein coding gene SH3 domain containing 21
Cpgi14809 4 126162219 to 126163441 1222 CpG island CpG island 14809
Tssr43348 4 126162619 to 126162637 18 - TSS region transcription start site region 43348
Tssr43349 4 126162644 to 126162655 11 - TSS region transcription start site region 43349
Tssr43350 4 126163275 to 126163296 21 - TSS region transcription start site region 43350
Tssr43351 4 126163307 to 126163332 25 - TSS region transcription start site region 43351
Tssr43352 4 126163470 to 126163486 16 - TSS region transcription start site region 43352
Thrap3 4 126164082 to 126202710 38628 - protein coding gene thyroid hormone receptor associated protein 3
Tssr43353 4 126168999 to 126169004 5 - TSS region transcription start site region 43353
Tssr43354 4 126195157 to 126195162 5 - TSS region transcription start site region 43354
Tssr43355 4 126198728 to 126198737 9 - TSS region transcription start site region 43355
Tssr43356 4 126201150 to 126201165 15 - TSS region transcription start site region 43356
Gm25323 4 126201175 to 126201277 102 - snRNA gene predicted gene, 25323
Cpgi14810 4 126202202 to 126203213 1011 CpG island CpG island 14810
Tssr43357 4 126202335 to 126202401 66 - TSS region transcription start site region 43357
Tssr43358 4 126202583 to 126202698 115 - TSS region transcription start site region 43358
Tssr43359 4 126202757 to 126202762 5 - TSS region transcription start site region 43359
D730050C22Rik 4 126202877 to 126203923 1046 unclassified gene RIKEN cDNA D730050C22 gene
Tssr38983 4 126202995 to 126203012 17 + TSS region transcription start site region 38983
Tssr38984 4 126227622 to 126227650 28 + TSS region transcription start site region 38984
Map7d1 4 126232167 to 126256343 24176 - protein coding gene MAP7 domain containing 1
Tssr43360 4 126236584 to 126236632 48 - TSS region transcription start site region 43360
Cpgi14811 4 126236604 to 126237416 812 CpG island CpG island 14811
Tssr43361 4 126237805 to 126237845 40 - TSS region transcription start site region 43361
Tssr43362 4 126242056 to 126242077 21 - TSS region transcription start site region 43362
Tssr43363 4 126242081 to 126242096 15 - TSS region transcription start site region 43363
Tssr43364 4 126242115 to 126242126 11 - TSS region transcription start site region 43364
Tssr43365 4 126242178 to 126242193 15 - TSS region transcription start site region 43365
Tssr43366 4 126242258 to 126242286 28 - TSS region transcription start site region 43366
Tssr43367 4 126242292 to 126242330 38 - TSS region transcription start site region 43367
Tssr43368 4 126249497 to 126249502 5 - TSS region transcription start site region 43368
Cpgi14812 4 126255321 to 126256705 1384 CpG island CpG island 14812
Tssr43369 4 126256073 to 126256101 28 - TSS region transcription start site region 43369
Tssr43370 4 126256226 to 126256370 144 - TSS region transcription start site region 43370
Tssr38985 4 126256656 to 126256662 6 + TSS region transcription start site region 38985
Tssr38986 4 126260384 to 126260390 6 + TSS region transcription start site region 38986
Cpgi14813 4 126262090 to 126262785 695 CpG island CpG island 14813
Tssr38987 4 126262369 to 126262380 11 + TSS region transcription start site region 38987
Tssr38988 4 126262382 to 126262402 20 + TSS region transcription start site region 38988
Trappc3 4 126262405 to 126275883 13478 + protein coding gene trafficking protein particle complex 3
Tssr38989 4 126273958 to 126273968 10 + TSS region transcription start site region 38989
Tssr38990 4 126274015 to 126274027 12 + TSS region transcription start site region 38990
Cpgi14814 4 126286312 to 126287231 919 CpG island CpG island 14814
Tssr38991 4 126286765 to 126286770 5 + TSS region transcription start site region 38991
Tssr38992 4 126286775 to 126286778 3 + TSS region transcription start site region 38992
Tssr38993 4 126286779 to 126286790 11 + TSS region transcription start site region 38993
Tssr38994 4 126286792 to 126286803 11 + TSS region transcription start site region 38994
Col8a2 4 126286794 to 126314330 27536 + protein coding gene collagen, type VIII, alpha 2
Tssr38995 4 126286812 to 126286827 15 + TSS region transcription start site region 38995
Tssr38996 4 126296171 to 126296174 3 + TSS region transcription start site region 38996
Gm8505 4 126296173 to 126297595 1422 unclassified gene predicted gene 8505
Cpgi14815 4 126296682 to 126297229 547 CpG island CpG island 14815
Cpgi14816 4 126300780 to 126302214 1434 CpG island CpG island 14816
Tssr43371 4 126301081 to 126301095 14 - TSS region transcription start site region 43371
Tssr43372 4 126301104 to 126301113 9 - TSS region transcription start site region 43372
Tssr38997 4 126314135 to 126314139 4 + TSS region transcription start site region 38997
Adprhl2 4 126316351 to 126321703 5352 - protein coding gene ADP-ribosylhydrolase like 2
Cpgi14817 4 126320935 to 126322439 1504 CpG island CpG island 14817
Tssr38998 4 126321145 to 126321158 13 + TSS region transcription start site region 38998
Tssr43373 4 126321669 to 126321704 35 - TSS region transcription start site region 43373
Tekt2 4 126322121 to 126325688 3567 - protein coding gene tektin 2
Gm12945 4 126323599 to 126325237 1638 + unclassified non-coding RNA gene predicted gene 12945
Tssr43374 4 126323704 to 126323737 33 - TSS region transcription start site region 43374
Cpgi14818 4 126324834 to 126324987 153 CpG island CpG island 14818
Tssr43375 4 126325641 to 126325653 12 - TSS region transcription start site region 43375