Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:124945206-125490415

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40243 4 124945664 to 124962828 17164 + lncRNA gene predicted gene, 40243
Gm12930 4 124957647 to 124987009 29362 - antisense lncRNA gene predicted gene 12930
Gm32371 4 124967638 to 124974608 6970 - lncRNA gene predicted gene, 32371
Cpgi14792 4 124985506 to 124987302 1796 CpG island CpG island 14792
Rspo1 4 124986430 to 125009099 22669 + protein coding gene R-spondin 1
Tssr38927 4 124986457 to 124986490 33 + TSS region transcription start site region 38927
Cpgi14793 4 124990050 to 124990469 419 CpG island CpG island 14793
Cpgi14794 4 125007597 to 125007890 293 CpG island CpG island 14794
Gm38472 4 125017675 to 125021008 3333 + lncRNA gene predicted gene, 38472
Gm12931 4 125019500 to 125019823 323 + pseudogene predicted gene 12931
Cpgi14795 4 125029821 to 125030501 680 CpG island CpG island 14795
Gnl2 4 125029989 to 125055382 25393 + protein coding gene guanine nucleotide binding protein-like 2 (nucleolar)
Tssr38928 4 125030006 to 125030070 64 + TSS region transcription start site region 38928
Tssr38929 4 125030072 to 125030084 12 + TSS region transcription start site region 38929
Tssr38930 4 125052749 to 125052778 29 + TSS region transcription start site region 38930
Dnali1 4 125055339 to 125065657 10318 - protein coding gene dynein, axonemal, light intermediate polypeptide 1
Tssr43330 4 125065603 to 125065672 69 - TSS region transcription start site region 43330
Cpgi14796 4 125066340 to 125067270 930 CpG island CpG island 14796
Tssr43331 4 125066585 to 125066596 11 - TSS region transcription start site region 43331
Tssr43332 4 125066634 to 125066648 14 - TSS region transcription start site region 43332
Tssr38931 4 125066672 to 125066715 43 + TSS region transcription start site region 38931
Snip1 4 125066672 to 125074042 7370 + protein coding gene Smad nuclear interacting protein 1
Tssr38932 4 125066723 to 125066732 9 + TSS region transcription start site region 38932
Gm18480 4 125075509 to 125076480 971 + pseudogene predicted gene, 18480
Gm12932 4 125082857 to 125084947 2090 - antisense lncRNA gene predicted gene 12932
Cpgi14797 4 125084455 to 125085816 1361 CpG island CpG island 14797
Tssr38933 4 125085111 to 125085122 11 + TSS region transcription start site region 38933
Meaf6 4 125085132 to 125110070 24938 + protein coding gene MYST/Esa1-associated factor 6
Tssr38934 4 125085136 to 125085173 37 + TSS region transcription start site region 38934
Tssr38935 4 125109601 to 125109631 30 + TSS region transcription start site region 38935
Tssr43333 4 125116671 to 125116714 43 - TSS region transcription start site region 43333
Zc3h12a 4 125118423 to 125127840 9417 - protein coding gene zinc finger CCCH type containing 12A
Tssr43334 4 125122460 to 125122469 9 - TSS region transcription start site region 43334
Tssr43335 4 125122505 to 125122532 27 - TSS region transcription start site region 43335
Tssr43336 4 125122539 to 125122563 24 - TSS region transcription start site region 43336
Tssr43337 4 125122577 to 125122588 11 - TSS region transcription start site region 43337
Tssr43338 4 125124948 to 125124961 13 - TSS region transcription start site region 43338
Tssr38936 4 125125000 to 125125021 21 + TSS region transcription start site region 38936
Tssr43339 4 125125021 to 125125036 15 - TSS region transcription start site region 43339
Tssr38937 4 125125109 to 125125143 34 + TSS region transcription start site region 38937
Tssr43340 4 125127150 to 125127171 21 - TSS region transcription start site region 43340
Cpgi14798 4 125127188 to 125128191 1003 CpG island CpG island 14798
Tssr43341 4 125127286 to 125127307 21 - TSS region transcription start site region 43341
Tssr38938 4 125127451 to 125127463 12 + TSS region transcription start site region 38938
Tssr43342 4 125127817 to 125127843 26 - TSS region transcription start site region 43342
Tssr43343 4 125127848 to 125127891 43 - TSS region transcription start site region 43343
Gm40246 4 125137545 to 125147719 10174 - lncRNA gene predicted gene, 40246
Gm32611 4 125145206 to 125290415 145209 + protein coding gene predicted gene, 32611
Tssr1294 4 125145527 to 125145545 18 + TSS region transcription start site region 1294
Tssr38939 4 125146225 to 125146237 12 + TSS region transcription start site region 38939
Tssr1295 4 125146254 to 125146270 16 + TSS region transcription start site region 1295
Gm40245 4 125150043 to 125187052 37009 + lncRNA gene predicted gene, 40245
Tssr38940 4 125150790 to 125150817 27 + TSS region transcription start site region 38940
Tssr38941 4 125158285 to 125158320 35 + TSS region transcription start site region 38941
Cpgi14799 4 125160441 to 125160699 258 CpG island CpG island 14799
Tssr38942 4 125176521 to 125176541 20 + TSS region transcription start site region 38942
Tssr38943 4 125176551 to 125176561 10 + TSS region transcription start site region 38943
Tssr38944 4 125176571 to 125176598 27 + TSS region transcription start site region 38944
D4Mit125 4 125180353 to 125180498 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 125
Gm40244 4 125218444 to 125219892 1448 + lncRNA gene predicted gene, 40244
1700041M05Rik 4 125228597 to 125242052 13455 + lincRNA gene RIKEN cDNA 1700041M05 gene
Cpgi14800 4 125275344 to 125275554 210 CpG island CpG island 14800
D4Mit335 4 125281408 to 125281529 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 335
Gm46869 4 125290536 to 125301544 11008 + lncRNA gene predicted gene, 46869
Gm32696 4 125312310 to 125313514 1204 - lncRNA gene predicted gene, 32696
D4Dcr23 4 125340410 to 125340505 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 23
D4Mit338 4 125340410 to 125340510 100 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 338
Tssr43344 4 125346951 to 125346961 10 - TSS region transcription start site region 43344
Tssr43345 4 125346963 to 125346975 12 - TSS region transcription start site region 43345
Tssr43346 4 125346986 to 125346996 10 - TSS region transcription start site region 43346
Gm40247 4 125381681 to 125394495 12814 + lncRNA gene predicted gene, 40247
Tssr38945 4 125445355 to 125445358 3 + TSS region transcription start site region 38945
Gm32756 4 125451074 to 125477201 26127 + lncRNA gene predicted gene, 32756
Cpgi14801 4 125489659 to 125492086 2427 CpG island CpG island 14801
Tssr38946 4 125490408 to 125490456 48 + TSS region transcription start site region 38946