Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:124836408-125726529

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mtf1 4 124802549 to 124849800 47251 + protein coding gene metal response element binding transcription factor 1
Tssr38921 4 124839957 to 124839961 4 + TSS region transcription start site region 38921
1110065P20Rik 4 124849485 to 124850730 1245 - protein coding gene RIKEN cDNA 1110065P20 gene
Cpgi14782 4 124849697 to 124851821 2124 CpG island CpG island 14782
Tssr43321 4 124850615 to 124850640 25 - TSS region transcription start site region 43321
Tssr43322 4 124850652 to 124850664 12 - TSS region transcription start site region 43322
Tssr43323 4 124850670 to 124850691 21 - TSS region transcription start site region 43323
Tssr38922 4 124850738 to 124850786 48 + TSS region transcription start site region 38922
Yrdc 4 124850759 to 124855242 4483 + protein coding gene yrdC domain containing (E.coli)
Tssr38923 4 124850790 to 124850809 19 + TSS region transcription start site region 38923
Tssr43324 4 124851119 to 124851147 28 - TSS region transcription start site region 43324
Tssr43325 4 124851152 to 124851203 51 - TSS region transcription start site region 43325
Maneal 4 124855239 to 124862171 6932 - protein coding gene mannosidase, endo-alpha-like
Cpgi14783 4 124861220 to 124862747 1527 CpG island CpG island 14783
Tssr43326 4 124862207 to 124862261 54 - TSS region transcription start site region 43326
Tssr43327 4 124862263 to 124862300 37 - TSS region transcription start site region 43327
Cpgi14784 4 124881289 to 124881987 698 CpG island CpG island 14784
Epha10 4 124881785 to 124917800 36015 + protein coding gene Eph receptor A10
Tssr38924 4 124881785 to 124881836 51 + TSS region transcription start site region 38924
Cpgi14785 4 124882240 to 124882806 566 CpG island CpG island 14785
Cpgi14786 4 124885444 to 124886254 810 CpG island CpG island 14786
1700125G02Rik 4 124890888 to 124894782 3894 - antisense lncRNA gene RIKEN cDNA 1700125G02 gene
Cpgi14787 4 124894118 to 124895467 1349 CpG island CpG island 14787
Arvm2 4 124897771 to 124897963 192 QTL autoimmune renal vasculitis 2
D4Mit147 4 124897771 to 124897963 192 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 147
Cpgi14788 4 124899716 to 124899985 269 CpG island CpG island 14788
Cpgi14789 4 124906175 to 124906515 340 CpG island CpG island 14789
D4Mit279 4 124911598 to 124911707 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 279
Cpgi14790 4 124912039 to 124912260 221 CpG island CpG island 14790
Cdca8 4 124918465 to 124936917 18452 - protein coding gene cell division cycle associated 8
Cpgi14791 4 124936315 to 124937274 959 CpG island CpG island 14791
Tssr43328 4 124936833 to 124936844 11 - TSS region transcription start site region 43328
Tssr43329 4 124936852 to 124936924 72 - TSS region transcription start site region 43329
Tssr38925 4 124937042 to 124937074 32 + TSS region transcription start site region 38925
9930104L06Rik 4 124937048 to 124944656 7608 + protein coding gene RIKEN cDNA 9930104L06 gene
Tssr38926 4 124937077 to 124937108 31 + TSS region transcription start site region 38926
Gm40243 4 124945664 to 124962828 17164 + lncRNA gene predicted gene, 40243
Gm12930 4 124957647 to 124987009 29362 - antisense lncRNA gene predicted gene 12930
Gm32371 4 124967638 to 124974608 6970 - lncRNA gene predicted gene, 32371
Cpgi14792 4 124985506 to 124987302 1796 CpG island CpG island 14792
Rspo1 4 124986430 to 125009099 22669 + protein coding gene R-spondin 1
Tssr38927 4 124986457 to 124986490 33 + TSS region transcription start site region 38927
Cpgi14793 4 124990050 to 124990469 419 CpG island CpG island 14793
Cpgi14794 4 125007597 to 125007890 293 CpG island CpG island 14794
Gm38472 4 125017675 to 125021008 3333 + lncRNA gene predicted gene, 38472
Gm12931 4 125019500 to 125019823 323 + pseudogene predicted gene 12931
Cpgi14795 4 125029821 to 125030501 680 CpG island CpG island 14795
Gnl2 4 125029989 to 125055382 25393 + protein coding gene guanine nucleotide binding protein-like 2 (nucleolar)
Tssr38928 4 125030006 to 125030070 64 + TSS region transcription start site region 38928
Tssr38929 4 125030072 to 125030084 12 + TSS region transcription start site region 38929
Tssr38930 4 125052749 to 125052778 29 + TSS region transcription start site region 38930
Dnali1 4 125055339 to 125065657 10318 - protein coding gene dynein, axonemal, light intermediate polypeptide 1
Tssr43330 4 125065603 to 125065672 69 - TSS region transcription start site region 43330
Cpgi14796 4 125066340 to 125067270 930 CpG island CpG island 14796
Tssr43331 4 125066585 to 125066596 11 - TSS region transcription start site region 43331
Tssr43332 4 125066634 to 125066648 14 - TSS region transcription start site region 43332
Snip1 4 125066672 to 125074042 7370 + protein coding gene Smad nuclear interacting protein 1
Tssr38931 4 125066672 to 125066715 43 + TSS region transcription start site region 38931
Tssr38932 4 125066723 to 125066732 9 + TSS region transcription start site region 38932
Gm18480 4 125075509 to 125076480 971 + pseudogene predicted gene, 18480
Gm12932 4 125082857 to 125084947 2090 - antisense lncRNA gene predicted gene 12932
Cpgi14797 4 125084455 to 125085816 1361 CpG island CpG island 14797
Tssr38933 4 125085111 to 125085122 11 + TSS region transcription start site region 38933
Meaf6 4 125085132 to 125110070 24938 + protein coding gene MYST/Esa1-associated factor 6
Tssr38934 4 125085136 to 125085173 37 + TSS region transcription start site region 38934
Tssr38935 4 125109601 to 125109631 30 + TSS region transcription start site region 38935
Tssr43333 4 125116671 to 125116714 43 - TSS region transcription start site region 43333
Zc3h12a 4 125118423 to 125127840 9417 - protein coding gene zinc finger CCCH type containing 12A
Tssr43334 4 125122460 to 125122469 9 - TSS region transcription start site region 43334
Tssr43335 4 125122505 to 125122532 27 - TSS region transcription start site region 43335
Tssr43336 4 125122539 to 125122563 24 - TSS region transcription start site region 43336
Tssr43337 4 125122577 to 125122588 11 - TSS region transcription start site region 43337
Tssr43338 4 125124948 to 125124961 13 - TSS region transcription start site region 43338
Tssr38936 4 125125000 to 125125021 21 + TSS region transcription start site region 38936
Tssr43339 4 125125021 to 125125036 15 - TSS region transcription start site region 43339
Tssr38937 4 125125109 to 125125143 34 + TSS region transcription start site region 38937
Tssr43340 4 125127150 to 125127171 21 - TSS region transcription start site region 43340
Cpgi14798 4 125127188 to 125128191 1003 CpG island CpG island 14798
Tssr43341 4 125127286 to 125127307 21 - TSS region transcription start site region 43341
Tssr38938 4 125127451 to 125127463 12 + TSS region transcription start site region 38938
Tssr43342 4 125127817 to 125127843 26 - TSS region transcription start site region 43342
Tssr43343 4 125127848 to 125127891 43 - TSS region transcription start site region 43343
Gm40246 4 125137545 to 125147719 10174 - lncRNA gene predicted gene, 40246
Gm32611 4 125145206 to 125290415 145209 + protein coding gene predicted gene, 32611
Tssr1294 4 125145527 to 125145545 18 + TSS region transcription start site region 1294
Tssr38939 4 125146225 to 125146237 12 + TSS region transcription start site region 38939
Tssr1295 4 125146254 to 125146270 16 + TSS region transcription start site region 1295
Gm40245 4 125150043 to 125187052 37009 + lncRNA gene predicted gene, 40245
Tssr38940 4 125150790 to 125150817 27 + TSS region transcription start site region 38940
Tssr38941 4 125158285 to 125158320 35 + TSS region transcription start site region 38941
Cpgi14799 4 125160441 to 125160699 258 CpG island CpG island 14799
Tssr38942 4 125176521 to 125176541 20 + TSS region transcription start site region 38942
Tssr38943 4 125176551 to 125176561 10 + TSS region transcription start site region 38943
Tssr38944 4 125176571 to 125176598 27 + TSS region transcription start site region 38944
D4Mit125 4 125180353 to 125180498 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 125
Gm40244 4 125218444 to 125219892 1448 + lncRNA gene predicted gene, 40244
1700041M05Rik 4 125228597 to 125242052 13455 + lincRNA gene RIKEN cDNA 1700041M05 gene
Cpgi14800 4 125275344 to 125275554 210 CpG island CpG island 14800
D4Mit335 4 125281408 to 125281529 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 335
Gm46869 4 125290536 to 125301544 11008 + lncRNA gene predicted gene, 46869
Gm32696 4 125312310 to 125313514 1204 - lncRNA gene predicted gene, 32696
D4Mit338 4 125340410 to 125340510 100 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 338
D4Dcr23 4 125340410 to 125340505 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 23
Tssr43344 4 125346951 to 125346961 10 - TSS region transcription start site region 43344
Tssr43345 4 125346963 to 125346975 12 - TSS region transcription start site region 43345
Tssr43346 4 125346986 to 125346996 10 - TSS region transcription start site region 43346
Gm40247 4 125381681 to 125394495 12814 + lncRNA gene predicted gene, 40247
Tssr38945 4 125445355 to 125445358 3 + TSS region transcription start site region 38945
Gm32756 4 125451074 to 125477201 26127 + lncRNA gene predicted gene, 32756
Cpgi14801 4 125489659 to 125492086 2427 CpG island CpG island 14801
Tssr38946 4 125490408 to 125490456 48 + TSS region transcription start site region 38946
Tssr38947 4 125490468 to 125490493 25 + TSS region transcription start site region 38947
Tssr38948 4 125490688 to 125490704 16 + TSS region transcription start site region 38948
Grik3 4 125490700 to 125714173 223473 + protein coding gene glutamate receptor, ionotropic, kainate 3
Tssr38949 4 125504076 to 125504078 2 + TSS region transcription start site region 38949
Ftl2-ps 4 125504288 to 125504839 551 + pseudogene ferritin light polypeptide 2, pseudogene
Tssr38950 4 125504634 to 125504653 19 + TSS region transcription start site region 38950
Mir692-2 4 125504749 to 125504857 108 + miRNA gene microRNA 692-2
Gm32807 4 125550236 to 125556079 5843 - lncRNA gene predicted gene, 32807
Hgb1 4 125583899 to 125583899 0 QTL hemoglobin 1
Rbc1 4 125583899 to 125583899 0 QTL red blood cell count 1
Hct1 4 125583899 to 125583899 0 QTL hematocrit 1
D4Dcr24 4 125597011 to 125597107 96 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 24
Tssr38951 4 125607630 to 125607633 3 + TSS region transcription start site region 38951
Tssr38952 4 125609946 to 125609962 16 + TSS region transcription start site region 38952
D4Mit280 4 125616150 to 125616274 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 280