Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:124796852-125076924

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Inpp5b 4 124741850 to 124801511 59661 + protein coding gene inositol polyphosphate-5-phosphatase B
Tssr38916 4 124798848 to 124798862 14 + TSS region transcription start site region 38916
Cpgi14781 4 124802025 to 124802762 737 CpG island CpG island 14781
Tssr38917 4 124802543 to 124802588 45 + TSS region transcription start site region 38917
Mtf1 4 124802549 to 124849800 47251 + protein coding gene metal response element binding transcription factor 1
Tssr1293 4 124802601 to 124802610 9 + TSS region transcription start site region 1293
Tssr38918 4 124802811 to 124802818 7 + TSS region transcription start site region 38918
Tssr38919 4 124802833 to 124802844 11 + TSS region transcription start site region 38919
Tssr38920 4 124804551 to 124804561 10 + TSS region transcription start site region 38920
n-R5s192 4 124820821 to 124820939 118 + rRNA gene nuclear encoded rRNA 5S 192
Tssr38921 4 124839957 to 124839961 4 + TSS region transcription start site region 38921
1110065P20Rik 4 124849485 to 124850730 1245 - protein coding gene RIKEN cDNA 1110065P20 gene
Cpgi14782 4 124849697 to 124851821 2124 CpG island CpG island 14782
Tssr43321 4 124850615 to 124850640 25 - TSS region transcription start site region 43321
Tssr43322 4 124850652 to 124850664 12 - TSS region transcription start site region 43322
Tssr43323 4 124850670 to 124850691 21 - TSS region transcription start site region 43323
Tssr38922 4 124850738 to 124850786 48 + TSS region transcription start site region 38922
Yrdc 4 124850759 to 124855242 4483 + protein coding gene yrdC domain containing (E.coli)
Tssr38923 4 124850790 to 124850809 19 + TSS region transcription start site region 38923
Tssr43324 4 124851119 to 124851147 28 - TSS region transcription start site region 43324
Tssr43325 4 124851152 to 124851203 51 - TSS region transcription start site region 43325
Maneal 4 124855239 to 124862171 6932 - protein coding gene mannosidase, endo-alpha-like
Cpgi14783 4 124861220 to 124862747 1527 CpG island CpG island 14783
Tssr43326 4 124862207 to 124862261 54 - TSS region transcription start site region 43326
Tssr43327 4 124862263 to 124862300 37 - TSS region transcription start site region 43327
Cpgi14784 4 124881289 to 124881987 698 CpG island CpG island 14784
Epha10 4 124881785 to 124917800 36015 + protein coding gene Eph receptor A10
Tssr38924 4 124881785 to 124881836 51 + TSS region transcription start site region 38924
Cpgi14785 4 124882240 to 124882806 566 CpG island CpG island 14785
Cpgi14786 4 124885444 to 124886254 810 CpG island CpG island 14786
1700125G02Rik 4 124890888 to 124894782 3894 - antisense lncRNA gene RIKEN cDNA 1700125G02 gene
Cpgi14787 4 124894118 to 124895467 1349 CpG island CpG island 14787
D4Mit147 4 124897771 to 124897963 192 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 147
Arvm2 4 124897771 to 124897963 192 QTL autoimmune renal vasculitis 2
Cpgi14788 4 124899716 to 124899985 269 CpG island CpG island 14788
Cpgi14789 4 124906175 to 124906515 340 CpG island CpG island 14789
D4Mit279 4 124911598 to 124911707 109 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 279
Cpgi14790 4 124912039 to 124912260 221 CpG island CpG island 14790
Cdca8 4 124918465 to 124936917 18452 - protein coding gene cell division cycle associated 8
Cpgi14791 4 124936315 to 124937274 959 CpG island CpG island 14791
Tssr43328 4 124936833 to 124936844 11 - TSS region transcription start site region 43328
Tssr43329 4 124936852 to 124936924 72 - TSS region transcription start site region 43329
Tssr38925 4 124937042 to 124937074 32 + TSS region transcription start site region 38925
9930104L06Rik 4 124937048 to 124944656 7608 + protein coding gene RIKEN cDNA 9930104L06 gene
Tssr38926 4 124937077 to 124937108 31 + TSS region transcription start site region 38926
Gm40243 4 124945664 to 124962828 17164 + lncRNA gene predicted gene, 40243
Gm12930 4 124957647 to 124987009 29362 - antisense lncRNA gene predicted gene 12930
Gm32371 4 124967638 to 124974608 6970 - lncRNA gene predicted gene, 32371
Cpgi14792 4 124985506 to 124987302 1796 CpG island CpG island 14792
Rspo1 4 124986430 to 125009099 22669 + protein coding gene R-spondin 1
Tssr38927 4 124986457 to 124986490 33 + TSS region transcription start site region 38927
Cpgi14793 4 124990050 to 124990469 419 CpG island CpG island 14793
Cpgi14794 4 125007597 to 125007890 293 CpG island CpG island 14794
Gm38472 4 125017675 to 125021008 3333 + lncRNA gene predicted gene, 38472
Gm12931 4 125019500 to 125019823 323 + pseudogene predicted gene 12931
Cpgi14795 4 125029821 to 125030501 680 CpG island CpG island 14795
Gnl2 4 125029989 to 125055382 25393 + protein coding gene guanine nucleotide binding protein-like 2 (nucleolar)
Tssr38928 4 125030006 to 125030070 64 + TSS region transcription start site region 38928
Tssr38929 4 125030072 to 125030084 12 + TSS region transcription start site region 38929
Tssr38930 4 125052749 to 125052778 29 + TSS region transcription start site region 38930
Dnali1 4 125055339 to 125065657 10318 - protein coding gene dynein, axonemal, light intermediate polypeptide 1
Tssr43330 4 125065603 to 125065672 69 - TSS region transcription start site region 43330
Cpgi14796 4 125066340 to 125067270 930 CpG island CpG island 14796
Tssr43331 4 125066585 to 125066596 11 - TSS region transcription start site region 43331
Tssr43332 4 125066634 to 125066648 14 - TSS region transcription start site region 43332
Snip1 4 125066672 to 125074042 7370 + protein coding gene Smad nuclear interacting protein 1
Tssr38931 4 125066672 to 125066715 43 + TSS region transcription start site region 38931
Tssr38932 4 125066723 to 125066732 9 + TSS region transcription start site region 38932
Gm18480 4 125075509 to 125076480 971 + pseudogene predicted gene, 18480