Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:124449947-124701328

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700057H15Rik 4 124449626 to 124485959 36333 - lincRNA gene RIKEN cDNA 1700057H15 gene
Tssr43312 4 124451286 to 124451311 25 - TSS region transcription start site region 43312
Tssr43313 4 124451319 to 124451320 1 - TSS region transcription start site region 43313
Gm31830 4 124451447 to 124456444 4997 + lncRNA gene predicted gene, 31830
Gm31769 4 124465276 to 124468075 2799 - lncRNA gene predicted gene, 31769
Tssr38879 4 124474436 to 124474441 5 + TSS region transcription start site region 38879
Cpgi14769 4 124511864 to 124512141 277 CpG island CpG island 14769
Gm2164 4 124528924 to 124657169 128245 - antisense lncRNA gene predicted gene 2164
4933407E24Rik 4 124569190 to 124574645 5455 + lincRNA gene RIKEN cDNA 4933407E24 gene
Cpgi14770 4 124574947 to 124576328 1381 CpG island CpG island 14770
3100002H09Rik 4 124609931 to 124610803 872 - unclassified gene RIKEN cDNA 3100002H09 gene
1110007E10Rik 4 124639917 to 124640836 919 unclassified gene RIKEN cDNA 1110007E10 gene
Cpgi14771 4 124656445 to 124659622 3177 CpG island CpG island 14771
Pou3f1 4 124657646 to 124660655 3009 + protein coding gene POU domain, class 3, transcription factor 1
Tssr38880 4 124657651 to 124657656 5 + TSS region transcription start site region 38880
Tssr38881 4 124659548 to 124659561 13 + TSS region transcription start site region 38881
Tssr38882 4 124659673 to 124659689 16 + TSS region transcription start site region 38882
Cpgi14772 4 124659902 to 124660153 251 CpG island CpG island 14772
Gm38545 4 124664294 to 124668677 4383 - lncRNA gene predicted gene, 38545
Tssr43314 4 124668187 to 124668201 14 - TSS region transcription start site region 43314
Cpgi14773 4 124672252 to 124672444 192 CpG island CpG island 14773
Utp11 4 124678232 to 124693612 15380 - protein coding gene UTP11 small subunit processome component
Cpgi14774 4 124693069 to 124693856 787 CpG island CpG island 14774
Tssr43315 4 124693547 to 124693565 18 - TSS region transcription start site region 43315
Tssr43316 4 124693568 to 124693606 38 - TSS region transcription start site region 43316
Tssr38883 4 124695828 to 124695835 7 + TSS region transcription start site region 38883
Tssr38884 4 124695842 to 124695861 19 + TSS region transcription start site region 38884
Tssr38885 4 124695909 to 124695920 11 + TSS region transcription start site region 38885
Tssr38886 4 124695941 to 124695985 44 + TSS region transcription start site region 38886
Tssr38887 4 124696001 to 124696014 13 + TSS region transcription start site region 38887
Tssr38888 4 124696017 to 124696027 10 + TSS region transcription start site region 38888
Tssr38889 4 124696833 to 124696868 35 + TSS region transcription start site region 38889
Gm24480 4 124697505 to 124697607 102 - snRNA gene predicted gene, 24480
Tssr38890 4 124698212 to 124698243 31 + TSS region transcription start site region 38890
Tssr43317 4 124699512 to 124699518 6 - TSS region transcription start site region 43317
Cpgi14775 4 124700233 to 124701240 1007 CpG island CpG island 14775
Tssr38891 4 124700371 to 124700384 13 + TSS region transcription start site region 38891
Tssr38892 4 124700671 to 124700698 27 + TSS region transcription start site region 38892
Tssr38893 4 124700700 to 124700728 28 + TSS region transcription start site region 38893
Fhl3 4 124700701 to 124708611 7910 + protein coding gene four and a half LIM domains 3