Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:123928693-124664848

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmtg2 4 116413782 to 124161387 7747605 QTL modifier of mammary tumor growth 2
Rragc 4 123917446 to 123936997 19551 + protein coding gene Ras-related GTP binding C
Tssr1290 4 123947977 to 123947985 8 + TSS region transcription start site region 1290
Cpgi14761 4 123957132 to 123957472 340 CpG island CpG island 14761
Cpgi14762 4 123972356 to 123972737 381 CpG island CpG island 14762
Tssr1291 4 123983388 to 123983397 9 + TSS region transcription start site region 1291
Cpgi14763 4 123990711 to 123991282 571 CpG island CpG island 14763
Gm40241 4 124053958 to 124070115 16157 + lncRNA gene predicted gene, 40241
Tssr43310 4 124120520 to 124120542 22 - TSS region transcription start site region 43310
Gasa1 4 124161300 to 142711450 18550150 QTL gastritis type A susceptibility locus 1
D4Mit308 4 124161300 to 124161387 87 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 308
Tgq3 4 124161300 to 124161387 87 QTL triglyceride QTL 3
Shali2 4 124161300 to 141845481 17684181 QTL survival time to hyperoxic acute lung injury 2
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1
Cpgi14764 4 124178369 to 124179166 797 CpG island CpG island 14764
Cpgi14765 4 124189402 to 124189570 168 CpG island CpG island 14765
Cpgi14766 4 124189999 to 124190169 170 CpG island CpG island 14766
D4Ucl1 4 124230728 to 124230784 56 DNA segment DNA segment, Chr 4, University College London 1
Cpgi14767 4 124236589 to 124236790 201 CpG island CpG island 14767
Gm40242 4 124271428 to 124272407 979 - lncRNA gene predicted gene, 40242
Cpgi14768 4 124277611 to 124278108 497 CpG island CpG island 14768
Gm37667 4 124277777 to 124279177 1400 - unclassified gene predicted gene, 37667
Gm12916 4 124293693 to 124299848 6155 - lincRNA gene predicted gene 12916
Tssr43311 4 124299861 to 124299877 16 - TSS region transcription start site region 43311
1700021L23Rik 4 124302837 to 124311461 8624 - lincRNA gene RIKEN cDNA 1700021L23 gene
D4Mit124 4 124315322 to 124315476 154 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 124
4933435F18Rik 4 124326308 to 124332508 6200 - lincRNA gene RIKEN cDNA 4933435F18 gene
Gm22983 4 124335578 to 124335681 103 - snRNA gene predicted gene, 22983
Start2 4 124371164 to 124371360 196 QTL startle response 2
Tlsr2 4 124371164 to 142504390 18133226 QTL thymic lymphoma suppressor region 2
Ccrs2 4 124371164 to 124371360 196 QTL corpus callosum hemisphere surface size 2
D4Mit12 4 124371164 to 124371360 196 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 12
Lmb1 4 124371164 to 150592401 26221237 QTL lupus in MRL and B6 F2 cross, QTL 1
Lith8 4 124371164 to 124371360 196 QTL lithogenic gene 8
D4Dcr22 4 124371179 to 124371281 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 22
Tssr38878 4 124377636 to 124377642 6 + TSS region transcription start site region 38878
Tssr1292 4 124397634 to 124397641 7 + TSS region transcription start site region 1292
1700057H15Rik 4 124449626 to 124485959 36333 - lincRNA gene RIKEN cDNA 1700057H15 gene
Tssr43312 4 124451286 to 124451311 25 - TSS region transcription start site region 43312
Tssr43313 4 124451319 to 124451320 1 - TSS region transcription start site region 43313
Gm31830 4 124451447 to 124456444 4997 + lncRNA gene predicted gene, 31830
Gm31769 4 124465276 to 124468075 2799 - lncRNA gene predicted gene, 31769
Tssr38879 4 124474436 to 124474441 5 + TSS region transcription start site region 38879
Cpgi14769 4 124511864 to 124512141 277 CpG island CpG island 14769
Gm2164 4 124528924 to 124657169 128245 - antisense lncRNA gene predicted gene 2164
4933407E24Rik 4 124569190 to 124574645 5455 + lincRNA gene RIKEN cDNA 4933407E24 gene
Cpgi14770 4 124574947 to 124576328 1381 CpG island CpG island 14770
3100002H09Rik 4 124609931 to 124610803 872 - unclassified gene RIKEN cDNA 3100002H09 gene
1110007E10Rik 4 124639917 to 124640836 919 unclassified gene RIKEN cDNA 1110007E10 gene
Cpgi14771 4 124656445 to 124659622 3177 CpG island CpG island 14771
Pou3f1 4 124657646 to 124660655 3009 + protein coding gene POU domain, class 3, transcription factor 1
Tssr38880 4 124657651 to 124657656 5 + TSS region transcription start site region 38880
Tssr38881 4 124659548 to 124659561 13 + TSS region transcription start site region 38881
Tssr38882 4 124659673 to 124659689 16 + TSS region transcription start site region 38882
Cpgi14772 4 124659902 to 124660153 251 CpG island CpG island 14772
Gm38545 4 124664294 to 124668677 4383 - lncRNA gene predicted gene, 38545