Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:123638232-125733612

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312 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmtg2 4 116413782 to 124161387 7747605 QTL modifier of mammary tumor growth 2
Macf1 4 123349633 to 123684360 334727 - protein coding gene microtubule-actin crosslinking factor 1
Gm35241 4 123644650 to 123647879 3229 - pseudogene predicted gene, 35241
Cpgi14755 4 123663703 to 123665561 1858 CpG island CpG island 14755
Tssr43288 4 123664725 to 123664805 80 - TSS region transcription start site region 43288
Tssr38865 4 123664808 to 123664832 24 + TSS region transcription start site region 38865
Tssr43289 4 123665468 to 123665488 20 - TSS region transcription start site region 43289
Tssr43290 4 123665501 to 123665513 12 - TSS region transcription start site region 43290
Gm12925 4 123665881 to 123671210 5329 + antisense lncRNA gene predicted gene 12925
Cpgi14756 4 123686257 to 123687791 1534 CpG island CpG island 14756
Tssr43291 4 123686707 to 123686729 22 - TSS region transcription start site region 43291
Tssr43292 4 123687237 to 123687307 70 - TSS region transcription start site region 43292
Tssr43293 4 123687319 to 123687356 37 - TSS region transcription start site region 43293
Gm12922 4 123709219 to 123710027 808 - pseudogene predicted gene 12922
Ndufs5 4 123712710 to 123718186 5476 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S5
Cpgi14757 4 123717733 to 123718485 752 CpG island CpG island 14757
Tssr43294 4 123718115 to 123718145 30 - TSS region transcription start site region 43294
Tssr43295 4 123718181 to 123718195 14 - TSS region transcription start site region 43295
Tssr43296 4 123718198 to 123718209 11 - TSS region transcription start site region 43296
Akirin1 4 123735195 to 123750299 15104 - protein coding gene akirin 1
Cpgi14758 4 123749500 to 123750619 1119 CpG island CpG island 14758
Tssr43297 4 123750230 to 123750235 5 - TSS region transcription start site region 43297
Tssr43298 4 123750236 to 123750293 57 - TSS region transcription start site region 43298
Tssr43299 4 123750298 to 123750309 11 - TSS region transcription start site region 43299
Tssr38866 4 123787843 to 123787855 12 + TSS region transcription start site region 38866
Tssr38867 4 123787857 to 123787886 29 + TSS region transcription start site region 38867
Rhbdl2 4 123787874 to 123829904 42030 + protein coding gene rhomboid like 2
Gm12904 4 123838098 to 123839242 1144 + pseudogene predicted gene 12904
Tssr43300 4 123841967 to 123841980 13 - TSS region transcription start site region 43300
Tssr43301 4 123841987 to 123841995 8 - TSS region transcription start site region 43301
Tssr43302 4 123842019 to 123842026 7 - TSS region transcription start site region 43302
Gm46860 4 123845999 to 123849513 3514 - pseudogene predicted gene, 46860
1700121C08Rik 4 123852457 to 123859409 6952 - antisense lncRNA gene RIKEN cDNA 1700121C08 gene
Tssr38868 4 123858342 to 123858353 11 + TSS region transcription start site region 38868
Tssr43303 4 123859520 to 123859558 38 - TSS region transcription start site region 43303
Tssr38869 4 123859651 to 123859700 49 + TSS region transcription start site region 38869
4933427I04Rik 4 123859679 to 123863165 3486 + protein coding gene Riken cDNA 4933427I04 gene
Gm31309 4 123877164 to 123880582 3418 + protein coding gene predicted gene, 31309
Tssr43304 4 123892803 to 123892807 4 - TSS region transcription start site region 43304
Tssr43305 4 123896592 to 123896604 12 - TSS region transcription start site region 43305
Tssr43306 4 123896616 to 123896625 9 - TSS region transcription start site region 43306
Gm40240 4 123897862 to 123901214 3352 - lncRNA gene predicted gene, 40240
Gm26606 4 123898633 to 123904842 6209 - lincRNA gene predicted gene, 26606
D130007C19Rik 4 123902129 to 123903634 1505 - pseudogene RIKEN cDNA D130007C19 gene
Gm12903 4 123902422 to 123902965 543 + pseudogene predicted gene 12903
Cpgi14759 4 123904625 to 123905576 951 CpG island CpG island 14759
Tssr43307 4 123904826 to 123904844 18 - TSS region transcription start site region 43307
Tssr38870 4 123904836 to 123904851 15 + TSS region transcription start site region 38870
Tssr38871 4 123904907 to 123904916 9 + TSS region transcription start site region 38871
Tssr38872 4 123904975 to 123904984 9 + TSS region transcription start site region 38872
Tssr38873 4 123904989 to 123905051 62 + TSS region transcription start site region 38873
Mycbp 4 123905013 to 123912250 7237 + protein coding gene MYC binding protein
Gm12905 4 123905062 to 123917269 12207 - antisense lncRNA gene predicted gene 12905
Tssr38874 4 123905130 to 123905150 20 + TSS region transcription start site region 38874
Tssr43308 4 123907440 to 123907444 4 - TSS region transcription start site region 43308
Cpgi14760 4 123916968 to 123918237 1269 CpG island CpG island 14760
Tssr43309 4 123917226 to 123917318 92 - TSS region transcription start site region 43309
Tssr38875 4 123917420 to 123917510 90 + TSS region transcription start site region 38875
Rragc 4 123917446 to 123936997 19551 + protein coding gene Ras-related GTP binding C
4930535I16Rik 4 123917504 to 123918022 518 - protein coding gene RIKEN cDNA 4930535I16 gene
Tssr38876 4 123921502 to 123921508 6 + TSS region transcription start site region 38876
Gm12902 4 123926234 to 123926555 321 + pseudogene predicted gene 12902
Tssr38877 4 123928298 to 123928319 21 + TSS region transcription start site region 38877
Tssr1290 4 123947977 to 123947985 8 + TSS region transcription start site region 1290
Cpgi14761 4 123957132 to 123957472 340 CpG island CpG island 14761
Cpgi14762 4 123972356 to 123972737 381 CpG island CpG island 14762
Tssr1291 4 123983388 to 123983397 9 + TSS region transcription start site region 1291
Cpgi14763 4 123990711 to 123991282 571 CpG island CpG island 14763
Gm40241 4 124053958 to 124070115 16157 + lncRNA gene predicted gene, 40241
Tssr43310 4 124120520 to 124120542 22 - TSS region transcription start site region 43310
Shali2 4 124161300 to 141845481 17684181 QTL survival time to hyperoxic acute lung injury 2
D4Mit308 4 124161300 to 124161387 87 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 308
Gasa1 4 124161300 to 142711450 18550150 QTL gastritis type A susceptibility locus 1
Tgq3 4 124161300 to 124161387 87 QTL triglyceride QTL 3
Skts-fp1 4 124161387 to 53550839 -70610548 QTL skin tumor susceptibility in FVB and PWK 1
Cpgi14764 4 124178369 to 124179166 797 CpG island CpG island 14764
Cpgi14765 4 124189402 to 124189570 168 CpG island CpG island 14765
Cpgi14766 4 124189999 to 124190169 170 CpG island CpG island 14766
D4Ucl1 4 124230728 to 124230784 56 DNA segment DNA segment, Chr 4, University College London 1
Cpgi14767 4 124236589 to 124236790 201 CpG island CpG island 14767
Gm40242 4 124271428 to 124272407 979 - lncRNA gene predicted gene, 40242
Cpgi14768 4 124277611 to 124278108 497 CpG island CpG island 14768
Gm37667 4 124277777 to 124279177 1400 - unclassified gene predicted gene, 37667
Gm12916 4 124293693 to 124299848 6155 - lincRNA gene predicted gene 12916
Tssr43311 4 124299861 to 124299877 16 - TSS region transcription start site region 43311
1700021L23Rik 4 124302837 to 124311461 8624 - lincRNA gene RIKEN cDNA 1700021L23 gene
D4Mit124 4 124315322 to 124315476 154 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 124
4933435F18Rik 4 124326308 to 124332508 6200 - lincRNA gene RIKEN cDNA 4933435F18 gene
Gm22983 4 124335578 to 124335681 103 - snRNA gene predicted gene, 22983
D4Mit12 4 124371164 to 124371360 196 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 12
Ccrs2 4 124371164 to 124371360 196 QTL corpus callosum hemisphere surface size 2
Tlsr2 4 124371164 to 142504390 18133226 QTL thymic lymphoma suppressor region 2
Lith8 4 124371164 to 124371360 196 QTL lithogenic gene 8
Lmb1 4 124371164 to 150592401 26221237 QTL lupus in MRL and B6 F2 cross, QTL 1
Start2 4 124371164 to 124371360 196 QTL startle response 2
D4Dcr22 4 124371179 to 124371281 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 22
Tssr38878 4 124377636 to 124377642 6 + TSS region transcription start site region 38878
Tssr1292 4 124397634 to 124397641 7 + TSS region transcription start site region 1292
1700057H15Rik 4 124449626 to 124485959 36333 - lincRNA gene RIKEN cDNA 1700057H15 gene
Tssr43312 4 124451286 to 124451311 25 - TSS region transcription start site region 43312
Tssr43313 4 124451319 to 124451320 1 - TSS region transcription start site region 43313
Gm31830 4 124451447 to 124456444 4997 + lncRNA gene predicted gene, 31830
Gm31769 4 124465276 to 124468075 2799 - lncRNA gene predicted gene, 31769
Tssr38879 4 124474436 to 124474441 5 + TSS region transcription start site region 38879
Cpgi14769 4 124511864 to 124512141 277 CpG island CpG island 14769
Gm2164 4 124528924 to 124657169 128245 - antisense lncRNA gene predicted gene 2164
4933407E24Rik 4 124569190 to 124574645 5455 + lincRNA gene RIKEN cDNA 4933407E24 gene
Cpgi14770 4 124574947 to 124576328 1381 CpG island CpG island 14770
3100002H09Rik 4 124609931 to 124610803 872 - unclassified gene RIKEN cDNA 3100002H09 gene
1110007E10Rik 4 124639917 to 124640836 919 unclassified gene RIKEN cDNA 1110007E10 gene
Cpgi14771 4 124656445 to 124659622 3177 CpG island CpG island 14771
Pou3f1 4 124657646 to 124660655 3009 + protein coding gene POU domain, class 3, transcription factor 1
Tssr38880 4 124657651 to 124657656 5 + TSS region transcription start site region 38880
Tssr38881 4 124659548 to 124659561 13 + TSS region transcription start site region 38881
Tssr38882 4 124659673 to 124659689 16 + TSS region transcription start site region 38882
Cpgi14772 4 124659902 to 124660153 251 CpG island CpG island 14772
Gm38545 4 124664294 to 124668677 4383 - lncRNA gene predicted gene, 38545
Tssr43314 4 124668187 to 124668201 14 - TSS region transcription start site region 43314
Cpgi14773 4 124672252 to 124672444 192 CpG island CpG island 14773
Utp11 4 124678232 to 124693612 15380 - protein coding gene UTP11 small subunit processome component
Cpgi14774 4 124693069 to 124693856 787 CpG island CpG island 14774
Tssr43315 4 124693547 to 124693565 18 - TSS region transcription start site region 43315
Tssr43316 4 124693568 to 124693606 38 - TSS region transcription start site region 43316
Tssr38883 4 124695828 to 124695835 7 + TSS region transcription start site region 38883
Tssr38884 4 124695842 to 124695861 19 + TSS region transcription start site region 38884
Tssr38885 4 124695909 to 124695920 11 + TSS region transcription start site region 38885
Tssr38886 4 124695941 to 124695985 44 + TSS region transcription start site region 38886
Tssr38887 4 124696001 to 124696014 13 + TSS region transcription start site region 38887
Tssr38888 4 124696017 to 124696027 10 + TSS region transcription start site region 38888
Tssr38889 4 124696833 to 124696868 35 + TSS region transcription start site region 38889
Gm24480 4 124697505 to 124697607 102 - snRNA gene predicted gene, 24480
Tssr38890 4 124698212 to 124698243 31 + TSS region transcription start site region 38890
Tssr43317 4 124699512 to 124699518 6 - TSS region transcription start site region 43317
Cpgi14775 4 124700233 to 124701240 1007 CpG island CpG island 14775
Tssr38891 4 124700371 to 124700384 13 + TSS region transcription start site region 38891
Tssr38892 4 124700671 to 124700698 27 + TSS region transcription start site region 38892
Tssr38893 4 124700700 to 124700728 28 + TSS region transcription start site region 38893
Fhl3 4 124700701 to 124708611 7910 + protein coding gene four and a half LIM domains 3
Tssr38894 4 124701385 to 124701418 33 + TSS region transcription start site region 38894
Tssr38895 4 124703601 to 124703640 39 + TSS region transcription start site region 38895
Tssr38896 4 124703648 to 124703665 17 + TSS region transcription start site region 38896
Tssr38897 4 124703716 to 124703726 10 + TSS region transcription start site region 38897
Tssr38898 4 124703737 to 124703740 3 + TSS region transcription start site region 38898
Tssr38899 4 124707887 to 124707916 29 + TSS region transcription start site region 38899
Tssr38900 4 124708350 to 124708354 4 + TSS region transcription start site region 38900
Tssr43318 4 124708632 to 124708656 24 - TSS region transcription start site region 43318
Cpgi14776 4 124708897 to 124709309 412 CpG island CpG island 14776
Tssr38901 4 124709167 to 124709192 25 + TSS region transcription start site region 38901
Cpgi14777 4 124710248 to 124710406 158 CpG island CpG island 14777
Cpgi14778 4 124714530 to 124715397 867 CpG island CpG island 14778
Tssr38902 4 124714809 to 124714879 70 + TSS region transcription start site region 38902
Sf3a3 4 124714861 to 124732423 17562 + protein coding gene splicing factor 3a, subunit 3
Gm12917 4 124718999 to 124719634 635 + pseudogene predicted gene 12917
Tssr38903 4 124724755 to 124724790 35 + TSS region transcription start site region 38903
Mir697 4 124731694 to 124731802 108 + miRNA gene microRNA 697
Gm12915 4 124735267 to 124745479 10212 - lncRNA gene predicted gene 12915
Gm24721 4 124735839 to 124735948 109 + miRNA gene predicted gene, 24721
Gm32117 4 124737406 to 124740105 2699 + lncRNA gene predicted gene, 32117
Tssr38904 4 124737648 to 124737659 11 + TSS region transcription start site region 38904
Tssr38905 4 124737694 to 124737706 12 + TSS region transcription start site region 38905
Tssr38906 4 124737742 to 124737759 17 + TSS region transcription start site region 38906
Tssr38907 4 124737798 to 124737806 8 + TSS region transcription start site region 38907
Tssr43319 4 124738776 to 124738805 29 - TSS region transcription start site region 43319
Tssr38908 4 124739021 to 124739055 34 + TSS region transcription start site region 38908
Cpgi14779 4 124741700 to 124741856 156 CpG island CpG island 14779
Tssr38909 4 124741844 to 124741884 40 + TSS region transcription start site region 38909
Inpp5b 4 124741850 to 124801511 59661 + protein coding gene inositol polyphosphate-5-phosphatase B
Tssr38910 4 124742917 to 124742929 12 + TSS region transcription start site region 38910
Tssr38911 4 124742932 to 124742943 11 + TSS region transcription start site region 38911
Mir698 4 124743781 to 124743889 108 + miRNA gene microRNA 698
Cpgi14780 4 124751206 to 124752221 1015 CpG island CpG island 14780
Tssr38912 4 124751595 to 124751604 9 + TSS region transcription start site region 38912
Tssr38913 4 124751608 to 124751649 41 + TSS region transcription start site region 38913
Tssr43320 4 124752163 to 124752193 30 - TSS region transcription start site region 43320
D4Nds2 4 124761871 to 124761969 98 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 2
Tssr38914 4 124791411 to 124791417 6 + TSS region transcription start site region 38914
Tssr38915 4 124791422 to 124791452 30 + TSS region transcription start site region 38915
Tssr38916 4 124798848 to 124798862 14 + TSS region transcription start site region 38916
Cpgi14781 4 124802025 to 124802762 737 CpG island CpG island 14781
Tssr38917 4 124802543 to 124802588 45 + TSS region transcription start site region 38917
Mtf1 4 124802549 to 124849800 47251 + protein coding gene metal response element binding transcription factor 1
Tssr1293 4 124802601 to 124802610 9 + TSS region transcription start site region 1293
Tssr38918 4 124802811 to 124802818 7 + TSS region transcription start site region 38918
Tssr38919 4 124802833 to 124802844 11 + TSS region transcription start site region 38919
Tssr38920 4 124804551 to 124804561 10 + TSS region transcription start site region 38920
n-R5s192 4 124820821 to 124820939 118 + rRNA gene nuclear encoded rRNA 5S 192
Tssr38921 4 124839957 to 124839961 4 + TSS region transcription start site region 38921
1110065P20Rik 4 124849485 to 124850730 1245 - protein coding gene RIKEN cDNA 1110065P20 gene
Cpgi14782 4 124849697 to 124851821 2124 CpG island CpG island 14782
Tssr43321 4 124850615 to 124850640 25 - TSS region transcription start site region 43321
Tssr43322 4 124850652 to 124850664 12 - TSS region transcription start site region 43322
Tssr43323 4 124850670 to 124850691 21 - TSS region transcription start site region 43323
Tssr38922 4 124850738 to 124850786 48 + TSS region transcription start site region 38922
Yrdc 4 124850759 to 124855242 4483 + protein coding gene yrdC domain containing (E.coli)
Tssr38923 4 124850790 to 124850809 19 + TSS region transcription start site region 38923
Tssr43324 4 124851119 to 124851147 28 - TSS region transcription start site region 43324
Tssr43325 4 124851152 to 124851203 51 - TSS region transcription start site region 43325
Maneal 4 124855239 to 124862171 6932 - protein coding gene mannosidase, endo-alpha-like
Cpgi14783 4 124861220 to 124862747 1527 CpG island CpG island 14783
Tssr43326 4 124862207 to 124862261 54 - TSS region transcription start site region 43326