Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:123134625-123994632

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Ppie 4 123127115 to 123139951 12836 - protein coding gene peptidylprolyl isomerase E (cyclophilin E)
Tssr43233 4 123138729 to 123138748 19 - TSS region transcription start site region 43233
Cpgi14745 4 123139345 to 123139995 650 CpG island CpG island 14745
Tssr43234 4 123139929 to 123139960 31 - TSS region transcription start site region 43234
Cpgi14746 4 123182389 to 123183895 1506 CpG island CpG island 14746
Tssr38849 4 123183456 to 123183601 145 + TSS region transcription start site region 38849
Hpcal4 4 123183504 to 123194699 11195 + protein coding gene hippocalcin-like 4
Tssr38850 4 123183722 to 123183738 16 + TSS region transcription start site region 38850
Cpgi14747 4 123188917 to 123189320 403 CpG island CpG island 14747
Tssr38851 4 123190941 to 123190949 8 + TSS region transcription start site region 38851
Cpgi14748 4 123201065 to 123202060 995 CpG island CpG island 14748
Tssr38852 4 123201225 to 123201270 45 + TSS region transcription start site region 38852
Tssr38853 4 123201416 to 123201431 15 + TSS region transcription start site region 38853
Tssr38854 4 123201450 to 123201493 43 + TSS region transcription start site region 38854
Tssr38855 4 123201503 to 123201529 26 + TSS region transcription start site region 38855
Nt5c1a 4 123201504 to 123216275 14771 + protein coding gene 5'-nucleotidase, cytosolic IA
D4Mit11 4 123233277 to 123233418 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 11
Cpgi14749 4 123233395 to 123234180 785 CpG island CpG island 14749
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43
Heyl 4 123233556 to 123249870 16314 + protein coding gene hairy/enhancer-of-split related with YRPW motif-like
Tssr38856 4 123233813 to 123233822 9 + TSS region transcription start site region 38856
Tssr38857 4 123233843 to 123233869 26 + TSS region transcription start site region 38857
Cpgi14750 4 123239127 to 123240298 1171 CpG island CpG island 14750
Tssr38858 4 123248351 to 123248354 3 + TSS region transcription start site region 38858
Gm12901 4 123258046 to 123258904 858 + pseudogene predicted gene 12901
Gm12900 4 123274900 to 123275472 572 - pseudogene predicted gene 12900
Cpgi14751 4 123282634 to 123282816 182 CpG island CpG island 14751
Tssr38859 4 123282678 to 123282734 56 + TSS region transcription start site region 38859
Pabpc4 4 123282716 to 123298832 16116 + protein coding gene poly(A) binding protein, cytoplasmic 4
Tssr38860 4 123282751 to 123282762 11 + TSS region transcription start site region 38860
Tssr38861 4 123282778 to 123282795 17 + TSS region transcription start site region 38861
Tssr38862 4 123283798 to 123283810 12 + TSS region transcription start site region 38862
Tssr43235 4 123286884 to 123286911 27 - TSS region transcription start site region 43235
Gm25788 4 123291344 to 123291474 130 + snoRNA gene predicted gene, 25788
Gm22154 4 123293152 to 123293282 130 + snoRNA gene predicted gene, 22154
D4Mit47 4 123304374 to 123304473 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 47
D4Mit221 4 123306211 to 123306355 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 221
Bmp8a 4 123312645 to 123343252 30607 - protein coding gene bone morphogenetic protein 8a
Oxct2a 4 123321875 to 123323634 1759 - protein coding gene 3-oxoacid CoA transferase 2A
Cpgi14752 4 123322794 to 123323909 1115 CpG island CpG island 14752
Tssr43236 4 123323596 to 123323601 5 - TSS region transcription start site region 43236
Tssr43237 4 123323603 to 123323639 36 - TSS region transcription start site region 43237
Cpgi14753 4 123342109 to 123343461 1352 CpG island CpG island 14753
Tssr43238 4 123342893 to 123342918 25 - TSS region transcription start site region 43238
Macf1 4 123349633 to 123684360 334727 - protein coding gene microtubule-actin crosslinking factor 1
Tssr43239 4 123350065 to 123350069 4 - TSS region transcription start site region 43239
Tssr43240 4 123350984 to 123350998 14 - TSS region transcription start site region 43240
Tssr43241 4 123379969 to 123379973 4 - TSS region transcription start site region 43241
Tssr43242 4 123387350 to 123387363 13 - TSS region transcription start site region 43242
Tssr43243 4 123399020 to 123399024 4 - TSS region transcription start site region 43243
D830031N03Rik 4 123403601 to 123411911 8310 - protein coding gene RIKEN cDNA D830031N03 gene
Cpgi14754 4 123411324 to 123412526 1202 CpG island CpG island 14754
Tssr43244 4 123411806 to 123411825 19 - TSS region transcription start site region 43244
Tssr43245 4 123411864 to 123411871 7 - TSS region transcription start site region 43245
Tssr43246 4 123411881 to 123411932 51 - TSS region transcription start site region 43246
Tssr43247 4 123411982 to 123411987 5 - TSS region transcription start site region 43247
Tssr43248 4 123412002 to 123412017 15 - TSS region transcription start site region 43248
Tssr43249 4 123415744 to 123415755 11 - TSS region transcription start site region 43249
Tssr43250 4 123432236 to 123432245 9 - TSS region transcription start site region 43250
Gm12924 4 123435617 to 123435934 317 + pseudogene predicted gene 12924
Tssr43251 4 123442885 to 123442891 6 - TSS region transcription start site region 43251
Tssr43252 4 123444886 to 123444899 13 - TSS region transcription start site region 43252
Tssr43253 4 123444903 to 123444916 13 - TSS region transcription start site region 43253
D4Mit169 4 123455268 to 123455370 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 169
Tssr43254 4 123471801 to 123471806 5 - TSS region transcription start site region 43254
Tssr43255 4 123472379 to 123472410 31 - TSS region transcription start site region 43255
Tssr43256 4 123472520 to 123472532 12 - TSS region transcription start site region 43256
Tssr43257 4 123473132 to 123473157 25 - TSS region transcription start site region 43257
Tssr43258 4 123479153 to 123479195 42 - TSS region transcription start site region 43258
Tssr43259 4 123486403 to 123486433 30 - TSS region transcription start site region 43259
Gm23548 4 123490231 to 123490336 105 + unclassified non-coding RNA gene predicted gene, 23548
Tssr43260 4 123512118 to 123512138 20 - TSS region transcription start site region 43260
Tssr43261 4 123512142 to 123512154 12 - TSS region transcription start site region 43261
D4Dcr21 4 123522461 to 123522563 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 21
Tssr43262 4 123527682 to 123527712 30 - TSS region transcription start site region 43262
Gm31156 4 123550407 to 123557041 6634 + lncRNA gene predicted gene, 31156
Tssr43263 4 123564607 to 123564622 15 - TSS region transcription start site region 43263
Tssr43264 4 123564625 to 123564632 7 - TSS region transcription start site region 43264
Tssr43265 4 123564647 to 123564663 16 - TSS region transcription start site region 43265
Tssr43266 4 123564672 to 123564701 29 - TSS region transcription start site region 43266
Tssr43267 4 123565314 to 123565328 14 - TSS region transcription start site region 43267
Tssr43268 4 123565436 to 123565453 17 - TSS region transcription start site region 43268
Tssr43269 4 123565461 to 123565474 13 - TSS region transcription start site region 43269
Tssr43270 4 123565484 to 123565496 12 - TSS region transcription start site region 43270
Tssr43271 4 123565557 to 123565565 8 - TSS region transcription start site region 43271
Tssr43272 4 123565583 to 123565608 25 - TSS region transcription start site region 43272
Tssr43273 4 123565627 to 123565634 7 - TSS region transcription start site region 43273
Tssr43274 4 123572817 to 123572845 28 - TSS region transcription start site region 43274
Tssr43275 4 123572866 to 123572877 11 - TSS region transcription start site region 43275
Tssr43276 4 123572907 to 123572938 31 - TSS region transcription start site region 43276
Tssr43277 4 123572939 to 123572959 20 - TSS region transcription start site region 43277
Tssr43278 4 123572972 to 123572988 16 - TSS region transcription start site region 43278
Tssr43279 4 123573071 to 123573081 10 - TSS region transcription start site region 43279
Tssr43280 4 123575703 to 123575708 5 - TSS region transcription start site region 43280
Tssr43281 4 123607138 to 123607143 5 - TSS region transcription start site region 43281
Tssr43282 4 123612103 to 123612107 4 - TSS region transcription start site region 43282
Tssr43283 4 123613701 to 123613751 50 - TSS region transcription start site region 43283
Tssr43284 4 123613756 to 123613768 12 - TSS region transcription start site region 43284
Tssr43285 4 123613775 to 123613799 24 - TSS region transcription start site region 43285
Tssr43286 4 123613801 to 123613813 12 - TSS region transcription start site region 43286
Tssr43287 4 123613821 to 123613833 12 - TSS region transcription start site region 43287
Mir6398 4 123616420 to 123616521 101 + miRNA gene microRNA 6398
Tssr38863 4 123624765 to 123624805 40 + TSS region transcription start site region 38863
Tssr38864 4 123630251 to 123630256 5 + TSS region transcription start site region 38864
Gm12926 4 123630295 to 123630703 408 + pseudogene predicted gene 12926
Gm35241 4 123644650 to 123647879 3229 - pseudogene predicted gene, 35241
Cpgi14755 4 123663703 to 123665561 1858 CpG island CpG island 14755
Tssr43288 4 123664725 to 123664805 80 - TSS region transcription start site region 43288
Tssr38865 4 123664808 to 123664832 24 + TSS region transcription start site region 38865
Tssr43289 4 123665468 to 123665488 20 - TSS region transcription start site region 43289
Tssr43290 4 123665501 to 123665513 12 - TSS region transcription start site region 43290
Gm12925 4 123665881 to 123671210 5329 + antisense lncRNA gene predicted gene 12925
Cpgi14756 4 123686257 to 123687791 1534 CpG island CpG island 14756
Tssr43291 4 123686707 to 123686729 22 - TSS region transcription start site region 43291
Tssr43292 4 123687237 to 123687307 70 - TSS region transcription start site region 43292
Tssr43293 4 123687319 to 123687356 37 - TSS region transcription start site region 43293
Gm12922 4 123709219 to 123710027 808 - pseudogene predicted gene 12922
Ndufs5 4 123712710 to 123718186 5476 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S5
Cpgi14757 4 123717733 to 123718485 752 CpG island CpG island 14757
Tssr43294 4 123718115 to 123718145 30 - TSS region transcription start site region 43294
Tssr43295 4 123718181 to 123718195 14 - TSS region transcription start site region 43295
Tssr43296 4 123718198 to 123718209 11 - TSS region transcription start site region 43296
Akirin1 4 123735195 to 123750299 15104 - protein coding gene akirin 1
Cpgi14758 4 123749500 to 123750619 1119 CpG island CpG island 14758
Tssr43297 4 123750230 to 123750235 5 - TSS region transcription start site region 43297
Tssr43298 4 123750236 to 123750293 57 - TSS region transcription start site region 43298
Tssr43299 4 123750298 to 123750309 11 - TSS region transcription start site region 43299
Tssr38866 4 123787843 to 123787855 12 + TSS region transcription start site region 38866
Tssr38867 4 123787857 to 123787886 29 + TSS region transcription start site region 38867
Rhbdl2 4 123787874 to 123829904 42030 + protein coding gene rhomboid like 2
Gm12904 4 123838098 to 123839242 1144 + pseudogene predicted gene 12904
Tssr43300 4 123841967 to 123841980 13 - TSS region transcription start site region 43300
Tssr43301 4 123841987 to 123841995 8 - TSS region transcription start site region 43301
Tssr43302 4 123842019 to 123842026 7 - TSS region transcription start site region 43302
Gm46860 4 123845999 to 123849513 3514 - pseudogene predicted gene, 46860
1700121C08Rik 4 123852457 to 123859409 6952 - antisense lncRNA gene RIKEN cDNA 1700121C08 gene
Tssr38868 4 123858342 to 123858353 11 + TSS region transcription start site region 38868
Tssr43303 4 123859520 to 123859558 38 - TSS region transcription start site region 43303
Tssr38869 4 123859651 to 123859700 49 + TSS region transcription start site region 38869
4933427I04Rik 4 123859679 to 123863165 3486 + protein coding gene Riken cDNA 4933427I04 gene
Gm31309 4 123877164 to 123880582 3418 + protein coding gene predicted gene, 31309
Tssr43304 4 123892803 to 123892807 4 - TSS region transcription start site region 43304
Tssr43305 4 123896592 to 123896604 12 - TSS region transcription start site region 43305
Tssr43306 4 123896616 to 123896625 9 - TSS region transcription start site region 43306
Gm40240 4 123897862 to 123901214 3352 - lncRNA gene predicted gene, 40240
Gm26606 4 123898633 to 123904842 6209 - lincRNA gene predicted gene, 26606
D130007C19Rik 4 123902129 to 123903634 1505 - pseudogene RIKEN cDNA D130007C19 gene
Gm12903 4 123902422 to 123902965 543 + pseudogene predicted gene 12903
Cpgi14759 4 123904625 to 123905576 951 CpG island CpG island 14759
Tssr43307 4 123904826 to 123904844 18 - TSS region transcription start site region 43307
Tssr38870 4 123904836 to 123904851 15 + TSS region transcription start site region 38870
Tssr38871 4 123904907 to 123904916 9 + TSS region transcription start site region 38871
Tssr38872 4 123904975 to 123904984 9 + TSS region transcription start site region 38872
Tssr38873 4 123904989 to 123905051 62 + TSS region transcription start site region 38873
Mycbp 4 123905013 to 123912250 7237 + protein coding gene MYC binding protein
Gm12905 4 123905062 to 123917269 12207 - antisense lncRNA gene predicted gene 12905
Tssr38874 4 123905130 to 123905150 20 + TSS region transcription start site region 38874
Tssr43308 4 123907440 to 123907444 4 - TSS region transcription start site region 43308
Cpgi14760 4 123916968 to 123918237 1269 CpG island CpG island 14760
Tssr43309 4 123917226 to 123917318 92 - TSS region transcription start site region 43309
Tssr38875 4 123917420 to 123917510 90 + TSS region transcription start site region 38875
Rragc 4 123917446 to 123936997 19551 + protein coding gene Ras-related GTP binding C
4930535I16Rik 4 123917504 to 123918022 518 - protein coding gene RIKEN cDNA 4930535I16 gene
Tssr38876 4 123921502 to 123921508 6 + TSS region transcription start site region 38876
Gm12902 4 123926234 to 123926555 321 + pseudogene predicted gene 12902
Tssr38877 4 123928298 to 123928319 21 + TSS region transcription start site region 38877
Tssr1290 4 123947977 to 123947985 8 + TSS region transcription start site region 1290
Cpgi14761 4 123957132 to 123957472 340 CpG island CpG island 14761
Cpgi14762 4 123972356 to 123972737 381 CpG island CpG island 14762
Tssr1291 4 123983388 to 123983397 9 + TSS region transcription start site region 1291
Cpgi14763 4 123990711 to 123991282 571 CpG island CpG island 14763