Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:122972678-123592734

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Cpgi14740 4 122983457 to 122983786 329 CpG island CpG island 14740
Cpgi14741 4 122995467 to 122997242 1775 CpG island CpG island 14741
Tssr1289 4 122995614 to 122995626 12 + TSS region transcription start site region 1289
Mycl 4 122995652 to 123002485 6833 + protein coding gene v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
Tssr38839 4 122995944 to 122995958 14 + TSS region transcription start site region 38839
Tssr38840 4 122996035 to 122996093 58 + TSS region transcription start site region 38840
Tssr38841 4 122998835 to 122998847 12 + TSS region transcription start site region 38841
Cpgi14742 4 123016357 to 123016981 624 CpG island CpG island 14742
Tssr38842 4 123016590 to 123016613 23 + TSS region transcription start site region 38842
Trit1 4 123016597 to 123054949 38352 + protein coding gene tRNA isopentenyltransferase 1
Tssr38843 4 123016632 to 123016639 7 + TSS region transcription start site region 38843
Tssr38844 4 123081035 to 123081052 17 + TSS region transcription start site region 38844
Gm46868 4 123081151 to 123089356 8205 + lncRNA gene predicted gene, 46868
Gm12923 4 123092765 to 123094028 1263 - antisense lncRNA gene predicted gene 12923
Bmp8b 4 123104307 to 123126094 21787 + protein coding gene bone morphogenetic protein 8b
Cpgi14743 4 123104532 to 123105916 1384 CpG island CpG island 14743
Tssr38845 4 123105129 to 123105138 9 + TSS region transcription start site region 38845
Tssr38846 4 123105146 to 123105168 22 + TSS region transcription start site region 38846
Gm17244 4 123113349 to 123116764 3415 - unclassified gene predicted gene, 17244
Cpgi14744 4 123116033 to 123117095 1062 CpG island CpG island 14744
Tssr38847 4 123116246 to 123116265 19 + TSS region transcription start site region 38847
Oxct2b 4 123116266 to 123118000 1734 + protein coding gene 3-oxoacid CoA transferase 2B
Tssr38848 4 123116272 to 123116277 5 + TSS region transcription start site region 38848
Ppie 4 123127115 to 123139951 12836 - protein coding gene peptidylprolyl isomerase E (cyclophilin E)
Tssr43233 4 123138729 to 123138748 19 - TSS region transcription start site region 43233
Cpgi14745 4 123139345 to 123139995 650 CpG island CpG island 14745
Tssr43234 4 123139929 to 123139960 31 - TSS region transcription start site region 43234
Cpgi14746 4 123182389 to 123183895 1506 CpG island CpG island 14746
Tssr38849 4 123183456 to 123183601 145 + TSS region transcription start site region 38849
Hpcal4 4 123183504 to 123194699 11195 + protein coding gene hippocalcin-like 4
Tssr38850 4 123183722 to 123183738 16 + TSS region transcription start site region 38850
Cpgi14747 4 123188917 to 123189320 403 CpG island CpG island 14747
Tssr38851 4 123190941 to 123190949 8 + TSS region transcription start site region 38851
Cpgi14748 4 123201065 to 123202060 995 CpG island CpG island 14748
Tssr38852 4 123201225 to 123201270 45 + TSS region transcription start site region 38852
Tssr38853 4 123201416 to 123201431 15 + TSS region transcription start site region 38853
Tssr38854 4 123201450 to 123201493 43 + TSS region transcription start site region 38854
Tssr38855 4 123201503 to 123201529 26 + TSS region transcription start site region 38855
Nt5c1a 4 123201504 to 123216275 14771 + protein coding gene 5'-nucleotidase, cytosolic IA
D4Mit11 4 123233277 to 123233418 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 11
Cpgi14749 4 123233395 to 123234180 785 CpG island CpG island 14749
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43
Heyl 4 123233556 to 123249870 16314 + protein coding gene hairy/enhancer-of-split related with YRPW motif-like
Tssr38856 4 123233813 to 123233822 9 + TSS region transcription start site region 38856
Tssr38857 4 123233843 to 123233869 26 + TSS region transcription start site region 38857
Cpgi14750 4 123239127 to 123240298 1171 CpG island CpG island 14750
Tssr38858 4 123248351 to 123248354 3 + TSS region transcription start site region 38858
Gm12901 4 123258046 to 123258904 858 + pseudogene predicted gene 12901
Gm12900 4 123274900 to 123275472 572 - pseudogene predicted gene 12900
Cpgi14751 4 123282634 to 123282816 182 CpG island CpG island 14751
Tssr38859 4 123282678 to 123282734 56 + TSS region transcription start site region 38859
Pabpc4 4 123282716 to 123298832 16116 + protein coding gene poly(A) binding protein, cytoplasmic 4
Tssr38860 4 123282751 to 123282762 11 + TSS region transcription start site region 38860
Tssr38861 4 123282778 to 123282795 17 + TSS region transcription start site region 38861
Tssr38862 4 123283798 to 123283810 12 + TSS region transcription start site region 38862
Tssr43235 4 123286884 to 123286911 27 - TSS region transcription start site region 43235
Gm25788 4 123291344 to 123291474 130 + snoRNA gene predicted gene, 25788
Gm22154 4 123293152 to 123293282 130 + snoRNA gene predicted gene, 22154
D4Mit47 4 123304374 to 123304473 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 47
D4Mit221 4 123306211 to 123306355 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 221
Bmp8a 4 123312645 to 123343252 30607 - protein coding gene bone morphogenetic protein 8a
Oxct2a 4 123321875 to 123323634 1759 - protein coding gene 3-oxoacid CoA transferase 2A
Cpgi14752 4 123322794 to 123323909 1115 CpG island CpG island 14752
Tssr43236 4 123323596 to 123323601 5 - TSS region transcription start site region 43236
Tssr43237 4 123323603 to 123323639 36 - TSS region transcription start site region 43237
Cpgi14753 4 123342109 to 123343461 1352 CpG island CpG island 14753
Tssr43238 4 123342893 to 123342918 25 - TSS region transcription start site region 43238
Macf1 4 123349633 to 123684360 334727 - protein coding gene microtubule-actin crosslinking factor 1
Tssr43239 4 123350065 to 123350069 4 - TSS region transcription start site region 43239
Tssr43240 4 123350984 to 123350998 14 - TSS region transcription start site region 43240
Tssr43241 4 123379969 to 123379973 4 - TSS region transcription start site region 43241
Tssr43242 4 123387350 to 123387363 13 - TSS region transcription start site region 43242
Tssr43243 4 123399020 to 123399024 4 - TSS region transcription start site region 43243
D830031N03Rik 4 123403601 to 123411911 8310 - protein coding gene RIKEN cDNA D830031N03 gene
Cpgi14754 4 123411324 to 123412526 1202 CpG island CpG island 14754
Tssr43244 4 123411806 to 123411825 19 - TSS region transcription start site region 43244
Tssr43245 4 123411864 to 123411871 7 - TSS region transcription start site region 43245
Tssr43246 4 123411881 to 123411932 51 - TSS region transcription start site region 43246
Tssr43247 4 123411982 to 123411987 5 - TSS region transcription start site region 43247
Tssr43248 4 123412002 to 123412017 15 - TSS region transcription start site region 43248
Tssr43249 4 123415744 to 123415755 11 - TSS region transcription start site region 43249
Tssr43250 4 123432236 to 123432245 9 - TSS region transcription start site region 43250
Gm12924 4 123435617 to 123435934 317 + pseudogene predicted gene 12924
Tssr43251 4 123442885 to 123442891 6 - TSS region transcription start site region 43251
Tssr43252 4 123444886 to 123444899 13 - TSS region transcription start site region 43252
Tssr43253 4 123444903 to 123444916 13 - TSS region transcription start site region 43253
D4Mit169 4 123455268 to 123455370 102 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 169
Tssr43254 4 123471801 to 123471806 5 - TSS region transcription start site region 43254
Tssr43255 4 123472379 to 123472410 31 - TSS region transcription start site region 43255
Tssr43256 4 123472520 to 123472532 12 - TSS region transcription start site region 43256
Tssr43257 4 123473132 to 123473157 25 - TSS region transcription start site region 43257
Tssr43258 4 123479153 to 123479195 42 - TSS region transcription start site region 43258
Tssr43259 4 123486403 to 123486433 30 - TSS region transcription start site region 43259
Gm23548 4 123490231 to 123490336 105 + unclassified non-coding RNA gene predicted gene, 23548
Tssr43260 4 123512118 to 123512138 20 - TSS region transcription start site region 43260
Tssr43261 4 123512142 to 123512154 12 - TSS region transcription start site region 43261
D4Dcr21 4 123522461 to 123522563 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 21
Tssr43262 4 123527682 to 123527712 30 - TSS region transcription start site region 43262
Gm31156 4 123550407 to 123557041 6634 + lncRNA gene predicted gene, 31156
Tssr43263 4 123564607 to 123564622 15 - TSS region transcription start site region 43263
Tssr43264 4 123564625 to 123564632 7 - TSS region transcription start site region 43264
Tssr43265 4 123564647 to 123564663 16 - TSS region transcription start site region 43265
Tssr43266 4 123564672 to 123564701 29 - TSS region transcription start site region 43266
Tssr43267 4 123565314 to 123565328 14 - TSS region transcription start site region 43267
Tssr43268 4 123565436 to 123565453 17 - TSS region transcription start site region 43268
Tssr43269 4 123565461 to 123565474 13 - TSS region transcription start site region 43269
Tssr43270 4 123565484 to 123565496 12 - TSS region transcription start site region 43270
Tssr43271 4 123565557 to 123565565 8 - TSS region transcription start site region 43271
Tssr43272 4 123565583 to 123565608 25 - TSS region transcription start site region 43272
Tssr43273 4 123565627 to 123565634 7 - TSS region transcription start site region 43273
Tssr43274 4 123572817 to 123572845 28 - TSS region transcription start site region 43274
Tssr43275 4 123572866 to 123572877 11 - TSS region transcription start site region 43275
Tssr43276 4 123572907 to 123572938 31 - TSS region transcription start site region 43276
Tssr43277 4 123572939 to 123572959 20 - TSS region transcription start site region 43277
Tssr43278 4 123572972 to 123572988 16 - TSS region transcription start site region 43278
Tssr43279 4 123573071 to 123573081 10 - TSS region transcription start site region 43279
Tssr43280 4 123575703 to 123575708 5 - TSS region transcription start site region 43280