Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:122946033-123287095

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Mfsd2a 4 122946850 to 122961188 14338 - protein coding gene major facilitator superfamily domain containing 2A
Tssr43229 4 122950223 to 122950229 6 - TSS region transcription start site region 43229
Cpgi14738 4 122955427 to 122955620 193 CpG island CpG island 14738
Tssr43230 4 122955510 to 122955533 23 - TSS region transcription start site region 43230
Cpgi14739 4 122960449 to 122961403 954 CpG island CpG island 14739
Tssr43231 4 122961173 to 122961193 20 - TSS region transcription start site region 43231
Tssr38837 4 122961274 to 122961349 75 + TSS region transcription start site region 38837
4933421A08Rik 4 122961309 to 122963475 2166 + unclassified gene RIKEN cDNA 4933421A08 gene
Tssr43232 4 122961449 to 122961453 4 - TSS region transcription start site region 43232
Tssr38838 4 122971490 to 122971493 3 + TSS region transcription start site region 38838
Cpgi14740 4 122983457 to 122983786 329 CpG island CpG island 14740
Cpgi14741 4 122995467 to 122997242 1775 CpG island CpG island 14741
Tssr1289 4 122995614 to 122995626 12 + TSS region transcription start site region 1289
Mycl 4 122995652 to 123002485 6833 + protein coding gene v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
Tssr38839 4 122995944 to 122995958 14 + TSS region transcription start site region 38839
Tssr38840 4 122996035 to 122996093 58 + TSS region transcription start site region 38840
Tssr38841 4 122998835 to 122998847 12 + TSS region transcription start site region 38841
Cpgi14742 4 123016357 to 123016981 624 CpG island CpG island 14742
Tssr38842 4 123016590 to 123016613 23 + TSS region transcription start site region 38842
Trit1 4 123016597 to 123054949 38352 + protein coding gene tRNA isopentenyltransferase 1
Tssr38843 4 123016632 to 123016639 7 + TSS region transcription start site region 38843
Tssr38844 4 123081035 to 123081052 17 + TSS region transcription start site region 38844
Gm46868 4 123081151 to 123089356 8205 + lncRNA gene predicted gene, 46868
Gm12923 4 123092765 to 123094028 1263 - antisense lncRNA gene predicted gene 12923
Bmp8b 4 123104307 to 123126094 21787 + protein coding gene bone morphogenetic protein 8b
Cpgi14743 4 123104532 to 123105916 1384 CpG island CpG island 14743
Tssr38845 4 123105129 to 123105138 9 + TSS region transcription start site region 38845
Tssr38846 4 123105146 to 123105168 22 + TSS region transcription start site region 38846
Gm17244 4 123113349 to 123116764 3415 - unclassified gene predicted gene, 17244
Cpgi14744 4 123116033 to 123117095 1062 CpG island CpG island 14744
Tssr38847 4 123116246 to 123116265 19 + TSS region transcription start site region 38847
Oxct2b 4 123116266 to 123118000 1734 + protein coding gene 3-oxoacid CoA transferase 2B
Tssr38848 4 123116272 to 123116277 5 + TSS region transcription start site region 38848
Ppie 4 123127115 to 123139951 12836 - protein coding gene peptidylprolyl isomerase E (cyclophilin E)
Tssr43233 4 123138729 to 123138748 19 - TSS region transcription start site region 43233
Cpgi14745 4 123139345 to 123139995 650 CpG island CpG island 14745
Tssr43234 4 123139929 to 123139960 31 - TSS region transcription start site region 43234
Cpgi14746 4 123182389 to 123183895 1506 CpG island CpG island 14746
Tssr38849 4 123183456 to 123183601 145 + TSS region transcription start site region 38849
Hpcal4 4 123183504 to 123194699 11195 + protein coding gene hippocalcin-like 4
Tssr38850 4 123183722 to 123183738 16 + TSS region transcription start site region 38850
Cpgi14747 4 123188917 to 123189320 403 CpG island CpG island 14747
Tssr38851 4 123190941 to 123190949 8 + TSS region transcription start site region 38851
Cpgi14748 4 123201065 to 123202060 995 CpG island CpG island 14748
Tssr38852 4 123201225 to 123201270 45 + TSS region transcription start site region 38852
Tssr38853 4 123201416 to 123201431 15 + TSS region transcription start site region 38853
Tssr38854 4 123201450 to 123201493 43 + TSS region transcription start site region 38854
Tssr38855 4 123201503 to 123201529 26 + TSS region transcription start site region 38855
Nt5c1a 4 123201504 to 123216275 14771 + protein coding gene 5'-nucleotidase, cytosolic IA
D4Mit11 4 123233277 to 123233418 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 11
Cpgi14749 4 123233395 to 123234180 785 CpG island CpG island 14749
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43
Heyl 4 123233556 to 123249870 16314 + protein coding gene hairy/enhancer-of-split related with YRPW motif-like
Tssr38856 4 123233813 to 123233822 9 + TSS region transcription start site region 38856
Tssr38857 4 123233843 to 123233869 26 + TSS region transcription start site region 38857
Cpgi14750 4 123239127 to 123240298 1171 CpG island CpG island 14750
Tssr38858 4 123248351 to 123248354 3 + TSS region transcription start site region 38858
Gm12901 4 123258046 to 123258904 858 + pseudogene predicted gene 12901
Gm12900 4 123274900 to 123275472 572 - pseudogene predicted gene 12900
Cpgi14751 4 123282634 to 123282816 182 CpG island CpG island 14751
Tssr38859 4 123282678 to 123282734 56 + TSS region transcription start site region 38859
Pabpc4 4 123282716 to 123298832 16116 + protein coding gene poly(A) binding protein, cytoplasmic 4
Tssr38860 4 123282751 to 123282762 11 + TSS region transcription start site region 38860
Tssr38861 4 123282778 to 123282795 17 + TSS region transcription start site region 38861
Tssr38862 4 123283798 to 123283810 12 + TSS region transcription start site region 38862
Tssr43235 4 123286884 to 123286911 27 - TSS region transcription start site region 43235