Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:122601357-123431981

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Gm12877 4 122582700 to 122604894 22194 - pseudogene predicted gene 12877
Gm12875 4 122640346 to 122648326 7980 - pseudogene predicted gene 12875
Gm12876 4 122660923 to 122677278 16355 - pseudogene predicted gene 12876
Tssr38821 4 122673787 to 122673797 10 + TSS region transcription start site region 38821
Tssr1287 4 122673802 to 122673806 4 + TSS region transcription start site region 1287
Tssr38822 4 122673821 to 122673832 11 + TSS region transcription start site region 38822
Tssr43201 4 122688958 to 122688963 5 - TSS region transcription start site region 43201
Tssr38823 4 122689253 to 122689258 5 + TSS region transcription start site region 38823
Tssr38824 4 122689262 to 122689283 21 + TSS region transcription start site region 38824
9530002B09Rik 4 122689275 to 122705129 15854 + protein coding gene RIKEN cDNA 9530002B09 gene
Tssr38825 4 122689291 to 122689320 29 + TSS region transcription start site region 38825
Tssr38826 4 122689330 to 122689369 39 + TSS region transcription start site region 38826
Tssr38827 4 122689383 to 122689391 8 + TSS region transcription start site region 38827
Tssr1288 4 122689397 to 122689406 9 + TSS region transcription start site region 1288
Tssr38828 4 122689432 to 122689437 5 + TSS region transcription start site region 38828
Gm30548 4 122726463 to 122739532 13069 - lncRNA gene predicted gene, 30548
Gm12872 4 122730284 to 122734733 4449 - pseudogene predicted gene 12872
Gm12873 4 122778154 to 122793749 15595 - pseudogene predicted gene 12873
Tssr43202 4 122793766 to 122793784 18 - TSS region transcription start site region 43202
Cpgi14736 4 122835925 to 122836495 570 CpG island CpG island 14736
Tssr38829 4 122836050 to 122836067 17 + TSS region transcription start site region 38829
Tssr38830 4 122836236 to 122836259 23 + TSS region transcription start site region 38830
Ppt1 4 122836242 to 122859175 22933 + protein coding gene palmitoyl-protein thioesterase 1
Tssr38831 4 122857958 to 122857996 38 + TSS region transcription start site region 38831
Tssr38832 4 122858567 to 122858570 3 + TSS region transcription start site region 38832
Cap1 4 122859047 to 122886056 27009 - protein coding gene CAP, adenylate cyclase-associated protein 1 (yeast)
Tssr43203 4 122859171 to 122859176 5 - TSS region transcription start site region 43203
Tssr43204 4 122859277 to 122859311 34 - TSS region transcription start site region 43204
Tssr43205 4 122859312 to 122859329 17 - TSS region transcription start site region 43205
Tssr43206 4 122859491 to 122859523 32 - TSS region transcription start site region 43206
Tssr43207 4 122859830 to 122859849 19 - TSS region transcription start site region 43207
Tssr43208 4 122861312 to 122861326 14 - TSS region transcription start site region 43208
Tssr43209 4 122861452 to 122861466 14 - TSS region transcription start site region 43209
Tssr43210 4 122862671 to 122862721 50 - TSS region transcription start site region 43210
Tssr43211 4 122862955 to 122863013 58 - TSS region transcription start site region 43211
Tssr43212 4 122864662 to 122864713 51 - TSS region transcription start site region 43212
Tssr43213 4 122869727 to 122869773 46 - TSS region transcription start site region 43213
Tssr43214 4 122878397 to 122878428 31 - TSS region transcription start site region 43214
Cpgi14737 4 122885569 to 122886842 1273 CpG island CpG island 14737
Tssr43215 4 122885747 to 122885753 6 - TSS region transcription start site region 43215
Tssr43216 4 122885834 to 122885897 63 - TSS region transcription start site region 43216
Tssr43217 4 122885905 to 122885919 14 - TSS region transcription start site region 43217
Tssr43218 4 122885943 to 122885985 42 - TSS region transcription start site region 43218
Tssr43219 4 122886007 to 122886018 11 - TSS region transcription start site region 43219
Tssr43220 4 122886029 to 122886040 11 - TSS region transcription start site region 43220
Tssr43221 4 122886044 to 122886068 24 - TSS region transcription start site region 43221
Tssr43222 4 122886073 to 122886074 1 - TSS region transcription start site region 43222
Tssr43223 4 122886080 to 122886096 16 - TSS region transcription start site region 43223
Tssr38833 4 122886238 to 122886293 55 + TSS region transcription start site region 38833
Gm12891 4 122925833 to 122926072 239 + pseudogene predicted gene 12891
Tssr43224 4 122927457 to 122927463 6 - TSS region transcription start site region 43224
Tssr38834 4 122933247 to 122933279 32 + TSS region transcription start site region 38834
Tssr43225 4 122933942 to 122933954 12 - TSS region transcription start site region 43225
Tssr43226 4 122933962 to 122933997 35 - TSS region transcription start site region 43226
Tssr43227 4 122934027 to 122934039 12 - TSS region transcription start site region 43227
Tssr38835 4 122935261 to 122935271 10 + TSS region transcription start site region 38835
Tssr38836 4 122936523 to 122936528 5 + TSS region transcription start site region 38836
Tssr43228 4 122939531 to 122939536 5 - TSS region transcription start site region 43228
Mfsd2a 4 122946850 to 122961188 14338 - protein coding gene major facilitator superfamily domain containing 2A
Tssr43229 4 122950223 to 122950229 6 - TSS region transcription start site region 43229
Cpgi14738 4 122955427 to 122955620 193 CpG island CpG island 14738
Tssr43230 4 122955510 to 122955533 23 - TSS region transcription start site region 43230
Cpgi14739 4 122960449 to 122961403 954 CpG island CpG island 14739
Tssr43231 4 122961173 to 122961193 20 - TSS region transcription start site region 43231
Tssr38837 4 122961274 to 122961349 75 + TSS region transcription start site region 38837
4933421A08Rik 4 122961309 to 122963475 2166 + unclassified gene RIKEN cDNA 4933421A08 gene
Tssr43232 4 122961449 to 122961453 4 - TSS region transcription start site region 43232
Tssr38838 4 122971490 to 122971493 3 + TSS region transcription start site region 38838
Cpgi14740 4 122983457 to 122983786 329 CpG island CpG island 14740
Cpgi14741 4 122995467 to 122997242 1775 CpG island CpG island 14741
Tssr1289 4 122995614 to 122995626 12 + TSS region transcription start site region 1289
Mycl 4 122995652 to 123002485 6833 + protein coding gene v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
Tssr38839 4 122995944 to 122995958 14 + TSS region transcription start site region 38839
Tssr38840 4 122996035 to 122996093 58 + TSS region transcription start site region 38840
Tssr38841 4 122998835 to 122998847 12 + TSS region transcription start site region 38841
Cpgi14742 4 123016357 to 123016981 624 CpG island CpG island 14742
Tssr38842 4 123016590 to 123016613 23 + TSS region transcription start site region 38842
Trit1 4 123016597 to 123054949 38352 + protein coding gene tRNA isopentenyltransferase 1
Tssr38843 4 123016632 to 123016639 7 + TSS region transcription start site region 38843
Tssr38844 4 123081035 to 123081052 17 + TSS region transcription start site region 38844
Gm46868 4 123081151 to 123089356 8205 + lncRNA gene predicted gene, 46868
Gm12923 4 123092765 to 123094028 1263 - antisense lncRNA gene predicted gene 12923
Bmp8b 4 123104307 to 123126094 21787 + protein coding gene bone morphogenetic protein 8b
Cpgi14743 4 123104532 to 123105916 1384 CpG island CpG island 14743
Tssr38845 4 123105129 to 123105138 9 + TSS region transcription start site region 38845
Tssr38846 4 123105146 to 123105168 22 + TSS region transcription start site region 38846
Gm17244 4 123113349 to 123116764 3415 - unclassified gene predicted gene, 17244
Cpgi14744 4 123116033 to 123117095 1062 CpG island CpG island 14744
Tssr38847 4 123116246 to 123116265 19 + TSS region transcription start site region 38847
Oxct2b 4 123116266 to 123118000 1734 + protein coding gene 3-oxoacid CoA transferase 2B
Tssr38848 4 123116272 to 123116277 5 + TSS region transcription start site region 38848
Ppie 4 123127115 to 123139951 12836 - protein coding gene peptidylprolyl isomerase E (cyclophilin E)
Tssr43233 4 123138729 to 123138748 19 - TSS region transcription start site region 43233
Cpgi14745 4 123139345 to 123139995 650 CpG island CpG island 14745
Tssr43234 4 123139929 to 123139960 31 - TSS region transcription start site region 43234
Cpgi14746 4 123182389 to 123183895 1506 CpG island CpG island 14746
Tssr38849 4 123183456 to 123183601 145 + TSS region transcription start site region 38849
Hpcal4 4 123183504 to 123194699 11195 + protein coding gene hippocalcin-like 4
Tssr38850 4 123183722 to 123183738 16 + TSS region transcription start site region 38850
Cpgi14747 4 123188917 to 123189320 403 CpG island CpG island 14747
Tssr38851 4 123190941 to 123190949 8 + TSS region transcription start site region 38851
Cpgi14748 4 123201065 to 123202060 995 CpG island CpG island 14748
Tssr38852 4 123201225 to 123201270 45 + TSS region transcription start site region 38852
Tssr38853 4 123201416 to 123201431 15 + TSS region transcription start site region 38853
Tssr38854 4 123201450 to 123201493 43 + TSS region transcription start site region 38854
Tssr38855 4 123201503 to 123201529 26 + TSS region transcription start site region 38855
Nt5c1a 4 123201504 to 123216275 14771 + protein coding gene 5'-nucleotidase, cytosolic IA
D4Mit11 4 123233277 to 123233418 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 11
Cpgi14749 4 123233395 to 123234180 785 CpG island CpG island 14749
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43
Heyl 4 123233556 to 123249870 16314 + protein coding gene hairy/enhancer-of-split related with YRPW motif-like
Tssr38856 4 123233813 to 123233822 9 + TSS region transcription start site region 38856
Tssr38857 4 123233843 to 123233869 26 + TSS region transcription start site region 38857
Cpgi14750 4 123239127 to 123240298 1171 CpG island CpG island 14750
Tssr38858 4 123248351 to 123248354 3 + TSS region transcription start site region 38858
Gm12901 4 123258046 to 123258904 858 + pseudogene predicted gene 12901
Gm12900 4 123274900 to 123275472 572 - pseudogene predicted gene 12900
Cpgi14751 4 123282634 to 123282816 182 CpG island CpG island 14751
Tssr38859 4 123282678 to 123282734 56 + TSS region transcription start site region 38859
Pabpc4 4 123282716 to 123298832 16116 + protein coding gene poly(A) binding protein, cytoplasmic 4
Tssr38860 4 123282751 to 123282762 11 + TSS region transcription start site region 38860
Tssr38861 4 123282778 to 123282795 17 + TSS region transcription start site region 38861
Tssr38862 4 123283798 to 123283810 12 + TSS region transcription start site region 38862
Tssr43235 4 123286884 to 123286911 27 - TSS region transcription start site region 43235
Gm25788 4 123291344 to 123291474 130 + snoRNA gene predicted gene, 25788
Gm22154 4 123293152 to 123293282 130 + snoRNA gene predicted gene, 22154
D4Mit47 4 123304374 to 123304473 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 47
D4Mit221 4 123306211 to 123306355 144 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 221
Bmp8a 4 123312645 to 123343252 30607 - protein coding gene bone morphogenetic protein 8a
Oxct2a 4 123321875 to 123323634 1759 - protein coding gene 3-oxoacid CoA transferase 2A
Cpgi14752 4 123322794 to 123323909 1115 CpG island CpG island 14752
Tssr43236 4 123323596 to 123323601 5 - TSS region transcription start site region 43236
Tssr43237 4 123323603 to 123323639 36 - TSS region transcription start site region 43237
Cpgi14753 4 123342109 to 123343461 1352 CpG island CpG island 14753
Tssr43238 4 123342893 to 123342918 25 - TSS region transcription start site region 43238
Macf1 4 123349633 to 123684360 334727 - protein coding gene microtubule-actin crosslinking factor 1
Tssr43239 4 123350065 to 123350069 4 - TSS region transcription start site region 43239
Tssr43240 4 123350984 to 123350998 14 - TSS region transcription start site region 43240
Tssr43241 4 123379969 to 123379973 4 - TSS region transcription start site region 43241
Tssr43242 4 123387350 to 123387363 13 - TSS region transcription start site region 43242
Tssr43243 4 123399020 to 123399024 4 - TSS region transcription start site region 43243
D830031N03Rik 4 123403601 to 123411911 8310 - protein coding gene RIKEN cDNA D830031N03 gene
Cpgi14754 4 123411324 to 123412526 1202 CpG island CpG island 14754
Tssr43244 4 123411806 to 123411825 19 - TSS region transcription start site region 43244
Tssr43245 4 123411864 to 123411871 7 - TSS region transcription start site region 43245
Tssr43246 4 123411881 to 123411932 51 - TSS region transcription start site region 43246
Tssr43247 4 123411982 to 123411987 5 - TSS region transcription start site region 43247
Tssr43248 4 123412002 to 123412017 15 - TSS region transcription start site region 43248
Tssr43249 4 123415744 to 123415755 11 - TSS region transcription start site region 43249