Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:121277847-122968072

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Gm12888 4 121316316 to 121324917 8601 - protein coding gene predicted gene 12888
Tssr43197 4 121324912 to 121324928 16 - TSS region transcription start site region 43197
Gm12889 4 121379794 to 121380034 240 + pseudogene predicted gene 12889
Gm12885 4 121380595 to 121380922 327 + pseudogene predicted gene 12885
Gm12884 4 121381429 to 121381753 324 + pseudogene predicted gene 12884
Gm12883 4 121392992 to 121396557 3565 + pseudogene predicted gene 12883
Gm8359 4 121394203 to 121396557 2354 - protein coding gene predicted gene 8359
Tssr43198 4 121396576 to 121396585 9 - TSS region transcription start site region 43198
Gm12886 4 121414735 to 121423099 8364 - protein coding gene predicted gene 12886
Gm12880 4 121476810 to 121479450 2640 - pseudogene predicted gene 12880
Gm26162 4 121509472 to 121509603 131 + snoRNA gene predicted gene, 26162
Tssr43199 4 121518945 to 121518960 15 - TSS region transcription start site region 43199
Tssr1285 4 121608995 to 121608997 2 + TSS region transcription start site region 1285
Gm12887 4 121614271 to 121622103 7832 - protein coding gene predicted gene 12887
Gm12878 4 121641446 to 121641777 331 + pseudogene predicted gene 12878
Gm21404 4 121907890 to 121920833 12943 - protein coding gene predicted gene, 21404
Cpgi14734 4 122008119 to 122008860 741 CpG island CpG island 14734
Tssr38820 4 122008140 to 122008172 32 + TSS region transcription start site region 38820
Gm12892 4 122008193 to 122009338 1145 + pseudogene predicted gene 12892
Tssr1286 4 122008548 to 122008556 8 - TSS region transcription start site region 1286
Cpgi14735 4 122022912 to 122023324 412 CpG island CpG island 14735
D4Mit201.1 4 122026628 to 122026739 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201.1
D4Mit201 4 122026727 to 122026884 157 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201
Gm12896 4 122122847 to 122123072 225 + pseudogene predicted gene 12896
Gm12897 4 122187748 to 122206656 18908 + pseudogene predicted gene 12897
Gm12893 4 122234979 to 122235917 938 + pseudogene predicted gene 12893
Gm10573 4 122300878 to 122313819 12941 - protein coding gene predicted gene 10573
Gm12895 4 122455210 to 122455435 225 + pseudogene predicted gene 12895
Tssr43200 4 122455301 to 122455350 49 - TSS region transcription start site region 43200
Gm30405 4 122520186 to 122539153 18967 + lncRNA gene predicted gene, 30405
Gm12877 4 122582700 to 122604894 22194 - pseudogene predicted gene 12877
Gm12874 4 122592984 to 122594068 1084 + pseudogene predicted gene 12874
Gm12875 4 122640346 to 122648326 7980 - pseudogene predicted gene 12875
Gm12876 4 122660923 to 122677278 16355 - pseudogene predicted gene 12876
Tssr38821 4 122673787 to 122673797 10 + TSS region transcription start site region 38821
Tssr1287 4 122673802 to 122673806 4 + TSS region transcription start site region 1287
Tssr38822 4 122673821 to 122673832 11 + TSS region transcription start site region 38822
Tssr43201 4 122688958 to 122688963 5 - TSS region transcription start site region 43201
Tssr38823 4 122689253 to 122689258 5 + TSS region transcription start site region 38823
Tssr38824 4 122689262 to 122689283 21 + TSS region transcription start site region 38824
9530002B09Rik 4 122689275 to 122705129 15854 + protein coding gene RIKEN cDNA 9530002B09 gene
Tssr38825 4 122689291 to 122689320 29 + TSS region transcription start site region 38825
Tssr38826 4 122689330 to 122689369 39 + TSS region transcription start site region 38826
Tssr38827 4 122689383 to 122689391 8 + TSS region transcription start site region 38827
Tssr1288 4 122689397 to 122689406 9 + TSS region transcription start site region 1288
Tssr38828 4 122689432 to 122689437 5 + TSS region transcription start site region 38828
Gm30548 4 122726463 to 122739532 13069 - lncRNA gene predicted gene, 30548
Gm12872 4 122730284 to 122734733 4449 - pseudogene predicted gene 12872
Gm12873 4 122778154 to 122793749 15595 - pseudogene predicted gene 12873
Tssr43202 4 122793766 to 122793784 18 - TSS region transcription start site region 43202
Cpgi14736 4 122835925 to 122836495 570 CpG island CpG island 14736
Tssr38829 4 122836050 to 122836067 17 + TSS region transcription start site region 38829
Tssr38830 4 122836236 to 122836259 23 + TSS region transcription start site region 38830
Ppt1 4 122836242 to 122859175 22933 + protein coding gene palmitoyl-protein thioesterase 1
Tssr38831 4 122857958 to 122857996 38 + TSS region transcription start site region 38831
Tssr38832 4 122858567 to 122858570 3 + TSS region transcription start site region 38832
Cap1 4 122859047 to 122886056 27009 - protein coding gene CAP, adenylate cyclase-associated protein 1 (yeast)
Tssr43203 4 122859171 to 122859176 5 - TSS region transcription start site region 43203
Tssr43204 4 122859277 to 122859311 34 - TSS region transcription start site region 43204
Tssr43205 4 122859312 to 122859329 17 - TSS region transcription start site region 43205
Tssr43206 4 122859491 to 122859523 32 - TSS region transcription start site region 43206
Tssr43207 4 122859830 to 122859849 19 - TSS region transcription start site region 43207
Tssr43208 4 122861312 to 122861326 14 - TSS region transcription start site region 43208
Tssr43209 4 122861452 to 122861466 14 - TSS region transcription start site region 43209
Tssr43210 4 122862671 to 122862721 50 - TSS region transcription start site region 43210
Tssr43211 4 122862955 to 122863013 58 - TSS region transcription start site region 43211
Tssr43212 4 122864662 to 122864713 51 - TSS region transcription start site region 43212
Tssr43213 4 122869727 to 122869773 46 - TSS region transcription start site region 43213
Tssr43214 4 122878397 to 122878428 31 - TSS region transcription start site region 43214
Cpgi14737 4 122885569 to 122886842 1273 CpG island CpG island 14737
Tssr43215 4 122885747 to 122885753 6 - TSS region transcription start site region 43215
Tssr43216 4 122885834 to 122885897 63 - TSS region transcription start site region 43216
Tssr43217 4 122885905 to 122885919 14 - TSS region transcription start site region 43217
Tssr43218 4 122885943 to 122885985 42 - TSS region transcription start site region 43218
Tssr43219 4 122886007 to 122886018 11 - TSS region transcription start site region 43219
Tssr43220 4 122886029 to 122886040 11 - TSS region transcription start site region 43220
Tssr43221 4 122886044 to 122886068 24 - TSS region transcription start site region 43221
Tssr43222 4 122886073 to 122886074 1 - TSS region transcription start site region 43222
Tssr43223 4 122886080 to 122886096 16 - TSS region transcription start site region 43223
Tssr38833 4 122886238 to 122886293 55 + TSS region transcription start site region 38833
Gm12891 4 122925833 to 122926072 239 + pseudogene predicted gene 12891
Tssr43224 4 122927457 to 122927463 6 - TSS region transcription start site region 43224
Tssr38834 4 122933247 to 122933279 32 + TSS region transcription start site region 38834
Tssr43225 4 122933942 to 122933954 12 - TSS region transcription start site region 43225
Tssr43226 4 122933962 to 122933997 35 - TSS region transcription start site region 43226
Tssr43227 4 122934027 to 122934039 12 - TSS region transcription start site region 43227
Tssr38835 4 122935261 to 122935271 10 + TSS region transcription start site region 38835
Tssr38836 4 122936523 to 122936528 5 + TSS region transcription start site region 38836
Tssr43228 4 122939531 to 122939536 5 - TSS region transcription start site region 43228
Mfsd2a 4 122946850 to 122961188 14338 - protein coding gene major facilitator superfamily domain containing 2A
Tssr43229 4 122950223 to 122950229 6 - TSS region transcription start site region 43229
Cpgi14738 4 122955427 to 122955620 193 CpG island CpG island 14738
Tssr43230 4 122955510 to 122955533 23 - TSS region transcription start site region 43230
Cpgi14739 4 122960449 to 122961403 954 CpG island CpG island 14739
Tssr43231 4 122961173 to 122961193 20 - TSS region transcription start site region 43231
Tssr38837 4 122961274 to 122961349 75 + TSS region transcription start site region 38837
4933421A08Rik 4 122961309 to 122963475 2166 + unclassified gene RIKEN cDNA 4933421A08 gene
Tssr43232 4 122961449 to 122961453 4 - TSS region transcription start site region 43232