Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:121007847-123238072

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dob1 4 101717404 to 123233418 21516014 QTL dietary obesity 1
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Smap2 4 120968317 to 121017247 48930 - protein coding gene small ArfGAP 2
Tssr43180 4 121008709 to 121008725 16 - TSS region transcription start site region 43180
Tssr43181 4 121014619 to 121014640 21 - TSS region transcription start site region 43181
Tssr38811 4 121016070 to 121016102 32 + TSS region transcription start site region 38811
Cpgi14728 4 121016389 to 121017405 1016 CpG island CpG island 14728
Tssr43182 4 121016980 to 121017008 28 - TSS region transcription start site region 43182
Tssr43183 4 121017147 to 121017199 52 - TSS region transcription start site region 43183
Tssr43184 4 121017201 to 121017261 60 - TSS region transcription start site region 43184
Cpgi14729 4 121017882 to 121018239 357 CpG island CpG island 14729
Cpgi14730 4 121039522 to 121040402 880 CpG island CpG island 14730
Tssr38812 4 121039556 to 121039680 124 + TSS region transcription start site region 38812
Col9a2 4 121039566 to 121055325 15759 + protein coding gene collagen, type IX, alpha 2
Tssr38813 4 121039681 to 121039697 16 + TSS region transcription start site region 38813
Tssr38814 4 121039701 to 121039712 11 + TSS region transcription start site region 38814
Tssr38815 4 121041759 to 121041771 12 + TSS region transcription start site region 38815
Cpgi14731 4 121052946 to 121053154 208 CpG island CpG island 14731
Tssr38816 4 121053030 to 121053043 13 + TSS region transcription start site region 38816
Tssr1283 4 121055313 to 121055324 11 - TSS region transcription start site region 1283
Zmpste24 4 121059237 to 121098241 39004 - protein coding gene zinc metallopeptidase, STE24
Gm26186 4 121075798 to 121075922 124 - snoRNA gene predicted gene, 26186
Tssr43185 4 121078740 to 121078751 11 - TSS region transcription start site region 43185
Gm23540 4 121083986 to 121084149 163 - snRNA gene predicted gene, 23540
Tssr1284 4 121084144 to 121084147 3 - TSS region transcription start site region 1284
Tssr38817 4 121094002 to 121094008 6 + TSS region transcription start site region 38817
Cpgi14732 4 121097676 to 121098392 716 CpG island CpG island 14732
Tssr43186 4 121098022 to 121098089 67 - TSS region transcription start site region 43186
Tssr43187 4 121098140 to 121098151 11 - TSS region transcription start site region 43187
Tssr43188 4 121098157 to 121098171 14 - TSS region transcription start site region 43188
Tssr43189 4 121098190 to 121098250 60 - TSS region transcription start site region 43189
Tssr43190 4 121098251 to 121098262 11 - TSS region transcription start site region 43190
Tmco2 4 121105651 to 121109226 3575 - protein coding gene transmembrane and coiled-coil domains 2
Tssr43191 4 121109184 to 121109193 9 - TSS region transcription start site region 43191
Tssr43192 4 121109199 to 121109231 32 - TSS region transcription start site region 43192
Tssr43193 4 121109239 to 121109253 14 - TSS region transcription start site region 43193
Gm12882 4 121114789 to 121115305 516 - pseudogene predicted gene 12882
Tssr43194 4 121115343 to 121115344 1 - TSS region transcription start site region 43194
Gm12881 4 121120874 to 121121296 422 - pseudogene predicted gene 12881
Gm12879 4 121130118 to 121131299 1181 + pseudogene predicted gene 12879
Tssr38818 4 121134654 to 121134659 5 + TSS region transcription start site region 38818
Gm22982 4 121134657 to 121134975 318 + unclassified non-coding RNA gene predicted gene, 22982
Rlf 4 121145373 to 121215084 69711 - protein coding gene rearranged L-myc fusion sequence
Tssr43195 4 121196488 to 121196492 4 - TSS region transcription start site region 43195
Cpgi14733 4 121214520 to 121215411 891 CpG island CpG island 14733
Tssr43196 4 121215071 to 121215114 43 - TSS region transcription start site region 43196
Tssr38819 4 121215291 to 121215302 11 + TSS region transcription start site region 38819
Gm12890 4 121227101 to 121227473 372 - pseudogene predicted gene 12890
Gm30102 4 121230920 to 121239213 8293 + lncRNA gene predicted gene, 30102
Gm40239 4 121235690 to 121241508 5818 - lncRNA gene predicted gene, 40239
Gm12888 4 121316316 to 121324917 8601 - protein coding gene predicted gene 12888
Tssr43197 4 121324912 to 121324928 16 - TSS region transcription start site region 43197
Gm12889 4 121379794 to 121380034 240 + pseudogene predicted gene 12889
Gm12885 4 121380595 to 121380922 327 + pseudogene predicted gene 12885
Gm12884 4 121381429 to 121381753 324 + pseudogene predicted gene 12884
Gm12883 4 121392992 to 121396557 3565 + pseudogene predicted gene 12883
Gm8359 4 121394203 to 121396557 2354 - protein coding gene predicted gene 8359
Tssr43198 4 121396576 to 121396585 9 - TSS region transcription start site region 43198
Gm12886 4 121414735 to 121423099 8364 - protein coding gene predicted gene 12886
Gm12880 4 121476810 to 121479450 2640 - pseudogene predicted gene 12880
Gm26162 4 121509472 to 121509603 131 + snoRNA gene predicted gene, 26162
Tssr43199 4 121518945 to 121518960 15 - TSS region transcription start site region 43199
Tssr1285 4 121608995 to 121608997 2 + TSS region transcription start site region 1285
Gm12887 4 121614271 to 121622103 7832 - protein coding gene predicted gene 12887
Gm12878 4 121641446 to 121641777 331 + pseudogene predicted gene 12878
Gm21404 4 121907890 to 121920833 12943 - protein coding gene predicted gene, 21404
Cpgi14734 4 122008119 to 122008860 741 CpG island CpG island 14734
Tssr38820 4 122008140 to 122008172 32 + TSS region transcription start site region 38820
Gm12892 4 122008193 to 122009338 1145 + pseudogene predicted gene 12892
Tssr1286 4 122008548 to 122008556 8 - TSS region transcription start site region 1286
Cpgi14735 4 122022912 to 122023324 412 CpG island CpG island 14735
D4Mit201.1 4 122026628 to 122026739 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201.1
D4Mit201 4 122026727 to 122026884 157 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201
Gm12896 4 122122847 to 122123072 225 + pseudogene predicted gene 12896
Gm12897 4 122187748 to 122206656 18908 + pseudogene predicted gene 12897
Gm12893 4 122234979 to 122235917 938 + pseudogene predicted gene 12893
Gm10573 4 122300878 to 122313819 12941 - protein coding gene predicted gene 10573
Gm12895 4 122455210 to 122455435 225 + pseudogene predicted gene 12895
Tssr43200 4 122455301 to 122455350 49 - TSS region transcription start site region 43200
Gm30405 4 122520186 to 122539153 18967 + lncRNA gene predicted gene, 30405
Gm12877 4 122582700 to 122604894 22194 - pseudogene predicted gene 12877
Gm12874 4 122592984 to 122594068 1084 + pseudogene predicted gene 12874
Gm12875 4 122640346 to 122648326 7980 - pseudogene predicted gene 12875
Gm12876 4 122660923 to 122677278 16355 - pseudogene predicted gene 12876
Tssr38821 4 122673787 to 122673797 10 + TSS region transcription start site region 38821
Tssr1287 4 122673802 to 122673806 4 + TSS region transcription start site region 1287
Tssr38822 4 122673821 to 122673832 11 + TSS region transcription start site region 38822
Tssr43201 4 122688958 to 122688963 5 - TSS region transcription start site region 43201
Tssr38823 4 122689253 to 122689258 5 + TSS region transcription start site region 38823
Tssr38824 4 122689262 to 122689283 21 + TSS region transcription start site region 38824
9530002B09Rik 4 122689275 to 122705129 15854 + protein coding gene RIKEN cDNA 9530002B09 gene
Tssr38825 4 122689291 to 122689320 29 + TSS region transcription start site region 38825
Tssr38826 4 122689330 to 122689369 39 + TSS region transcription start site region 38826
Tssr38827 4 122689383 to 122689391 8 + TSS region transcription start site region 38827
Tssr1288 4 122689397 to 122689406 9 + TSS region transcription start site region 1288
Tssr38828 4 122689432 to 122689437 5 + TSS region transcription start site region 38828
Gm30548 4 122726463 to 122739532 13069 - lncRNA gene predicted gene, 30548
Gm12872 4 122730284 to 122734733 4449 - pseudogene predicted gene 12872
Gm12873 4 122778154 to 122793749 15595 - pseudogene predicted gene 12873
Tssr43202 4 122793766 to 122793784 18 - TSS region transcription start site region 43202
Cpgi14736 4 122835925 to 122836495 570 CpG island CpG island 14736
Tssr38829 4 122836050 to 122836067 17 + TSS region transcription start site region 38829
Tssr38830 4 122836236 to 122836259 23 + TSS region transcription start site region 38830
Ppt1 4 122836242 to 122859175 22933 + protein coding gene palmitoyl-protein thioesterase 1
Tssr38831 4 122857958 to 122857996 38 + TSS region transcription start site region 38831
Tssr38832 4 122858567 to 122858570 3 + TSS region transcription start site region 38832
Cap1 4 122859047 to 122886056 27009 - protein coding gene CAP, adenylate cyclase-associated protein 1 (yeast)
Tssr43203 4 122859171 to 122859176 5 - TSS region transcription start site region 43203
Tssr43204 4 122859277 to 122859311 34 - TSS region transcription start site region 43204
Tssr43205 4 122859312 to 122859329 17 - TSS region transcription start site region 43205
Tssr43206 4 122859491 to 122859523 32 - TSS region transcription start site region 43206
Tssr43207 4 122859830 to 122859849 19 - TSS region transcription start site region 43207
Tssr43208 4 122861312 to 122861326 14 - TSS region transcription start site region 43208
Tssr43209 4 122861452 to 122861466 14 - TSS region transcription start site region 43209
Tssr43210 4 122862671 to 122862721 50 - TSS region transcription start site region 43210
Tssr43211 4 122862955 to 122863013 58 - TSS region transcription start site region 43211
Tssr43212 4 122864662 to 122864713 51 - TSS region transcription start site region 43212
Tssr43213 4 122869727 to 122869773 46 - TSS region transcription start site region 43213
Tssr43214 4 122878397 to 122878428 31 - TSS region transcription start site region 43214
Cpgi14737 4 122885569 to 122886842 1273 CpG island CpG island 14737
Tssr43215 4 122885747 to 122885753 6 - TSS region transcription start site region 43215
Tssr43216 4 122885834 to 122885897 63 - TSS region transcription start site region 43216
Tssr43217 4 122885905 to 122885919 14 - TSS region transcription start site region 43217
Tssr43218 4 122885943 to 122885985 42 - TSS region transcription start site region 43218
Tssr43219 4 122886007 to 122886018 11 - TSS region transcription start site region 43219
Tssr43220 4 122886029 to 122886040 11 - TSS region transcription start site region 43220
Tssr43221 4 122886044 to 122886068 24 - TSS region transcription start site region 43221
Tssr43222 4 122886073 to 122886074 1 - TSS region transcription start site region 43222
Tssr43223 4 122886080 to 122886096 16 - TSS region transcription start site region 43223
Tssr38833 4 122886238 to 122886293 55 + TSS region transcription start site region 38833
Gm12891 4 122925833 to 122926072 239 + pseudogene predicted gene 12891
Tssr43224 4 122927457 to 122927463 6 - TSS region transcription start site region 43224
Tssr38834 4 122933247 to 122933279 32 + TSS region transcription start site region 38834
Tssr43225 4 122933942 to 122933954 12 - TSS region transcription start site region 43225
Tssr43226 4 122933962 to 122933997 35 - TSS region transcription start site region 43226
Tssr43227 4 122934027 to 122934039 12 - TSS region transcription start site region 43227
Tssr38835 4 122935261 to 122935271 10 + TSS region transcription start site region 38835
Tssr38836 4 122936523 to 122936528 5 + TSS region transcription start site region 38836
Tssr43228 4 122939531 to 122939536 5 - TSS region transcription start site region 43228
Mfsd2a 4 122946850 to 122961188 14338 - protein coding gene major facilitator superfamily domain containing 2A
Tssr43229 4 122950223 to 122950229 6 - TSS region transcription start site region 43229
Cpgi14738 4 122955427 to 122955620 193 CpG island CpG island 14738
Tssr43230 4 122955510 to 122955533 23 - TSS region transcription start site region 43230
Cpgi14739 4 122960449 to 122961403 954 CpG island CpG island 14739
Tssr43231 4 122961173 to 122961193 20 - TSS region transcription start site region 43231
Tssr38837 4 122961274 to 122961349 75 + TSS region transcription start site region 38837
4933421A08Rik 4 122961309 to 122963475 2166 + unclassified gene RIKEN cDNA 4933421A08 gene
Tssr43232 4 122961449 to 122961453 4 - TSS region transcription start site region 43232
Tssr38838 4 122971490 to 122971493 3 + TSS region transcription start site region 38838
Cpgi14740 4 122983457 to 122983786 329 CpG island CpG island 14740
Cpgi14741 4 122995467 to 122997242 1775 CpG island CpG island 14741
Tssr1289 4 122995614 to 122995626 12 + TSS region transcription start site region 1289
Mycl 4 122995652 to 123002485 6833 + protein coding gene v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
Tssr38839 4 122995944 to 122995958 14 + TSS region transcription start site region 38839
Tssr38840 4 122996035 to 122996093 58 + TSS region transcription start site region 38840
Tssr38841 4 122998835 to 122998847 12 + TSS region transcription start site region 38841
Cpgi14742 4 123016357 to 123016981 624 CpG island CpG island 14742
Tssr38842 4 123016590 to 123016613 23 + TSS region transcription start site region 38842
Trit1 4 123016597 to 123054949 38352 + protein coding gene tRNA isopentenyltransferase 1
Tssr38843 4 123016632 to 123016639 7 + TSS region transcription start site region 38843
Tssr38844 4 123081035 to 123081052 17 + TSS region transcription start site region 38844
Gm46868 4 123081151 to 123089356 8205 + lncRNA gene predicted gene, 46868
Gm12923 4 123092765 to 123094028 1263 - antisense lncRNA gene predicted gene 12923
Bmp8b 4 123104307 to 123126094 21787 + protein coding gene bone morphogenetic protein 8b
Cpgi14743 4 123104532 to 123105916 1384 CpG island CpG island 14743
Tssr38845 4 123105129 to 123105138 9 + TSS region transcription start site region 38845
Tssr38846 4 123105146 to 123105168 22 + TSS region transcription start site region 38846
Gm17244 4 123113349 to 123116764 3415 - unclassified gene predicted gene, 17244
Cpgi14744 4 123116033 to 123117095 1062 CpG island CpG island 14744
Tssr38847 4 123116246 to 123116265 19 + TSS region transcription start site region 38847
Oxct2b 4 123116266 to 123118000 1734 + protein coding gene 3-oxoacid CoA transferase 2B
Tssr38848 4 123116272 to 123116277 5 + TSS region transcription start site region 38848
Ppie 4 123127115 to 123139951 12836 - protein coding gene peptidylprolyl isomerase E (cyclophilin E)
Tssr43233 4 123138729 to 123138748 19 - TSS region transcription start site region 43233
Cpgi14745 4 123139345 to 123139995 650 CpG island CpG island 14745
Tssr43234 4 123139929 to 123139960 31 - TSS region transcription start site region 43234
Cpgi14746 4 123182389 to 123183895 1506 CpG island CpG island 14746
Tssr38849 4 123183456 to 123183601 145 + TSS region transcription start site region 38849
Hpcal4 4 123183504 to 123194699 11195 + protein coding gene hippocalcin-like 4
Tssr38850 4 123183722 to 123183738 16 + TSS region transcription start site region 38850
Cpgi14747 4 123188917 to 123189320 403 CpG island CpG island 14747
Tssr38851 4 123190941 to 123190949 8 + TSS region transcription start site region 38851
Cpgi14748 4 123201065 to 123202060 995 CpG island CpG island 14748
Tssr38852 4 123201225 to 123201270 45 + TSS region transcription start site region 38852
Tssr38853 4 123201416 to 123201431 15 + TSS region transcription start site region 38853
Tssr38854 4 123201450 to 123201493 43 + TSS region transcription start site region 38854
Tssr38855 4 123201503 to 123201529 26 + TSS region transcription start site region 38855
Nt5c1a 4 123201504 to 123216275 14771 + protein coding gene 5'-nucleotidase, cytosolic IA
D4Mit11 4 123233277 to 123233418 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 11
Cpgi14749 4 123233395 to 123234180 785 CpG island CpG island 14749
Sluc43 4 123233418 to 46642108 -76591310 QTL susceptibility to lung cancer 43
Heyl 4 123233556 to 123249870 16314 + protein coding gene hairy/enhancer-of-split related with YRPW motif-like
Tssr38856 4 123233813 to 123233822 9 + TSS region transcription start site region 38856
Tssr38857 4 123233843 to 123233869 26 + TSS region transcription start site region 38857