Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:120964472-122054603

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Tssr43166 4 120965835 to 120965846 11 - TSS region transcription start site region 43166
Smap2 4 120968317 to 121017247 48930 - protein coding gene small ArfGAP 2
Tssr43167 4 120968825 to 120968857 32 - TSS region transcription start site region 43167
Tssr43168 4 120968901 to 120968920 19 - TSS region transcription start site region 43168
Tssr38810 4 120969254 to 120969280 26 + TSS region transcription start site region 38810
Tssr43169 4 120972112 to 120972125 13 - TSS region transcription start site region 43169
Mir7015 4 120973259 to 120973322 63 - miRNA gene microRNA 7015
Tssr43170 4 120975006 to 120975023 17 - TSS region transcription start site region 43170
Tssr43171 4 120975180 to 120975189 9 - TSS region transcription start site region 43171
Tssr43172 4 120975406 to 120975432 26 - TSS region transcription start site region 43172
Tssr43173 4 120975442 to 120975465 23 - TSS region transcription start site region 43173
Tssr43174 4 120975466 to 120975474 8 - TSS region transcription start site region 43174
Tssr43175 4 120975519 to 120975584 65 - TSS region transcription start site region 43175
Tssr43176 4 120975604 to 120975616 12 - TSS region transcription start site region 43176
Tssr43177 4 120980089 to 120980102 13 - TSS region transcription start site region 43177
Tssr43178 4 120985247 to 120985260 13 - TSS region transcription start site region 43178
Tssr43179 4 120985288 to 120985303 15 - TSS region transcription start site region 43179
Tssr43180 4 121008709 to 121008725 16 - TSS region transcription start site region 43180
Tssr43181 4 121014619 to 121014640 21 - TSS region transcription start site region 43181
Tssr38811 4 121016070 to 121016102 32 + TSS region transcription start site region 38811
Cpgi14728 4 121016389 to 121017405 1016 CpG island CpG island 14728
Tssr43182 4 121016980 to 121017008 28 - TSS region transcription start site region 43182
Tssr43183 4 121017147 to 121017199 52 - TSS region transcription start site region 43183
Tssr43184 4 121017201 to 121017261 60 - TSS region transcription start site region 43184
Cpgi14729 4 121017882 to 121018239 357 CpG island CpG island 14729
Cpgi14730 4 121039522 to 121040402 880 CpG island CpG island 14730
Tssr38812 4 121039556 to 121039680 124 + TSS region transcription start site region 38812
Col9a2 4 121039566 to 121055325 15759 + protein coding gene collagen, type IX, alpha 2
Tssr38813 4 121039681 to 121039697 16 + TSS region transcription start site region 38813
Tssr38814 4 121039701 to 121039712 11 + TSS region transcription start site region 38814
Tssr38815 4 121041759 to 121041771 12 + TSS region transcription start site region 38815
Cpgi14731 4 121052946 to 121053154 208 CpG island CpG island 14731
Tssr38816 4 121053030 to 121053043 13 + TSS region transcription start site region 38816
Tssr1283 4 121055313 to 121055324 11 - TSS region transcription start site region 1283
Zmpste24 4 121059237 to 121098241 39004 - protein coding gene zinc metallopeptidase, STE24
Gm26186 4 121075798 to 121075922 124 - snoRNA gene predicted gene, 26186
Tssr43185 4 121078740 to 121078751 11 - TSS region transcription start site region 43185
Gm23540 4 121083986 to 121084149 163 - snRNA gene predicted gene, 23540
Tssr1284 4 121084144 to 121084147 3 - TSS region transcription start site region 1284
Tssr38817 4 121094002 to 121094008 6 + TSS region transcription start site region 38817
Cpgi14732 4 121097676 to 121098392 716 CpG island CpG island 14732
Tssr43186 4 121098022 to 121098089 67 - TSS region transcription start site region 43186
Tssr43187 4 121098140 to 121098151 11 - TSS region transcription start site region 43187
Tssr43188 4 121098157 to 121098171 14 - TSS region transcription start site region 43188
Tssr43189 4 121098190 to 121098250 60 - TSS region transcription start site region 43189
Tssr43190 4 121098251 to 121098262 11 - TSS region transcription start site region 43190
Tmco2 4 121105651 to 121109226 3575 - protein coding gene transmembrane and coiled-coil domains 2
Tssr43191 4 121109184 to 121109193 9 - TSS region transcription start site region 43191
Tssr43192 4 121109199 to 121109231 32 - TSS region transcription start site region 43192
Tssr43193 4 121109239 to 121109253 14 - TSS region transcription start site region 43193
Gm12882 4 121114789 to 121115305 516 - pseudogene predicted gene 12882
Tssr43194 4 121115343 to 121115344 1 - TSS region transcription start site region 43194
Gm12881 4 121120874 to 121121296 422 - pseudogene predicted gene 12881
Gm12879 4 121130118 to 121131299 1181 + pseudogene predicted gene 12879
Tssr38818 4 121134654 to 121134659 5 + TSS region transcription start site region 38818
Gm22982 4 121134657 to 121134975 318 + unclassified non-coding RNA gene predicted gene, 22982
Rlf 4 121145373 to 121215084 69711 - protein coding gene rearranged L-myc fusion sequence
Tssr43195 4 121196488 to 121196492 4 - TSS region transcription start site region 43195
Cpgi14733 4 121214520 to 121215411 891 CpG island CpG island 14733
Tssr43196 4 121215071 to 121215114 43 - TSS region transcription start site region 43196
Tssr38819 4 121215291 to 121215302 11 + TSS region transcription start site region 38819
Gm12890 4 121227101 to 121227473 372 - pseudogene predicted gene 12890
Gm30102 4 121230920 to 121239213 8293 + lncRNA gene predicted gene, 30102
Gm40239 4 121235690 to 121241508 5818 - lncRNA gene predicted gene, 40239
Gm12888 4 121316316 to 121324917 8601 - protein coding gene predicted gene 12888
Tssr43197 4 121324912 to 121324928 16 - TSS region transcription start site region 43197
Gm12889 4 121379794 to 121380034 240 + pseudogene predicted gene 12889
Gm12885 4 121380595 to 121380922 327 + pseudogene predicted gene 12885
Gm12884 4 121381429 to 121381753 324 + pseudogene predicted gene 12884
Gm12883 4 121392992 to 121396557 3565 + pseudogene predicted gene 12883
Gm8359 4 121394203 to 121396557 2354 - protein coding gene predicted gene 8359
Tssr43198 4 121396576 to 121396585 9 - TSS region transcription start site region 43198
Gm12886 4 121414735 to 121423099 8364 - protein coding gene predicted gene 12886
Gm12880 4 121476810 to 121479450 2640 - pseudogene predicted gene 12880
Gm26162 4 121509472 to 121509603 131 + snoRNA gene predicted gene, 26162
Tssr43199 4 121518945 to 121518960 15 - TSS region transcription start site region 43199
Tssr1285 4 121608995 to 121608997 2 + TSS region transcription start site region 1285
Gm12887 4 121614271 to 121622103 7832 - protein coding gene predicted gene 12887
Gm12878 4 121641446 to 121641777 331 + pseudogene predicted gene 12878
Gm21404 4 121907890 to 121920833 12943 - protein coding gene predicted gene, 21404
Cpgi14734 4 122008119 to 122008860 741 CpG island CpG island 14734
Tssr38820 4 122008140 to 122008172 32 + TSS region transcription start site region 38820
Gm12892 4 122008193 to 122009338 1145 + pseudogene predicted gene 12892
Tssr1286 4 122008548 to 122008556 8 - TSS region transcription start site region 1286
Cpgi14735 4 122022912 to 122023324 412 CpG island CpG island 14735
D4Mit201.1 4 122026628 to 122026739 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201.1
D4Mit201 4 122026727 to 122026884 157 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 201