Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:120590118-121671299

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iva1 4 117214774 to 120866006 3651232 QTL isovaleric acid smelling 1
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Gm8439 4 120588745 to 120609673 20928 + protein coding gene predicted gene 8439
D4Mit76 4 120605063 to 120605244 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 76
Tssr43153 4 120613870 to 120613882 12 - TSS region transcription start site region 43153
Tssr38799 4 120615816 to 120615832 16 + TSS region transcription start site region 38799
Gm12860 4 120615840 to 120622682 6842 + lincRNA gene predicted gene 12860
Gm45579 4 120644219 to 120648137 3918 - lincRNA gene predicted gene 45579
Cpgi14716 4 120649455 to 120650367 912 CpG island CpG island 14716
Gm29891 4 120659638 to 120663276 3638 + lncRNA gene predicted gene, 29891
D4Dcr19 4 120665728 to 120665823 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 19
Cpgi14717 4 120666463 to 120667695 1232 CpG island CpG island 14717
Tssr38800 4 120666562 to 120666579 17 + TSS region transcription start site region 38800
Cited4 4 120666572 to 120667820 1248 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
Tssr38801 4 120666614 to 120666623 9 + TSS region transcription start site region 38801
Tssr38802 4 120666935 to 120666943 8 + TSS region transcription start site region 38802
Tssr38803 4 120667159 to 120667172 13 + TSS region transcription start site region 38803
Kcnq4 4 120696134 to 120747491 51357 - protein coding gene potassium voltage-gated channel, subfamily Q, member 4
Cpgi14718 4 120697853 to 120698256 403 CpG island CpG island 14718
Cpgi14719 4 120716392 to 120716991 599 CpG island CpG island 14719
Cpgi14720 4 120731185 to 120731584 399 CpG island CpG island 14720
Cpgi14721 4 120746482 to 120748285 1803 CpG island CpG island 14721
Tssr43154 4 120746909 to 120746969 60 - TSS region transcription start site region 43154
Tssr43155 4 120747395 to 120747404 9 - TSS region transcription start site region 43155
Cpgi14722 4 120748486 to 120748862 376 CpG island CpG island 14722
Nfyc 4 120757438 to 120831572 74134 - protein coding gene nuclear transcription factor-Y gamma
Mir30c-1 4 120769534 to 120769622 88 - miRNA gene microRNA 30c-1
Mirc39 4 120769534 to 120772697 3163 complex/cluster/region micro RNA cluster 39, including Mir30c-1 through Mir31e
Mir30e 4 120772606 to 120772697 91 - miRNA gene microRNA 30e
Mir30f 4 120772606 to 120772697 91 + miRNA gene microRNA 30f
Tssr43156 4 120797822 to 120797826 4 - TSS region transcription start site region 43156
Tssr43157 4 120810409 to 120810413 4 - TSS region transcription start site region 43157
Tssr43158 4 120814110 to 120814116 6 - TSS region transcription start site region 43158
Tssr43159 4 120815703 to 120815761 58 - TSS region transcription start site region 43159
Cpgi14723 4 120824837 to 120826131 1294 CpG island CpG island 14723
Tssr43160 4 120825165 to 120825212 47 - TSS region transcription start site region 43160
Tssr38804 4 120825318 to 120825369 51 + TSS region transcription start site region 38804
Tssr43161 4 120825665 to 120825680 15 - TSS region transcription start site region 43161
Tssr43162 4 120825751 to 120825796 45 - TSS region transcription start site region 43162
Gm23936 4 120837488 to 120837597 109 + miRNA gene predicted gene, 23936
D4Dcr20 4 120850521 to 120850616 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 20
Cpgi14724 4 120854648 to 120855509 861 CpG island CpG island 14724
Tssr38805 4 120854779 to 120854784 5 + TSS region transcription start site region 38805
Tssr38806 4 120854786 to 120854843 57 + TSS region transcription start site region 38806
Rims3 4 120854816 to 120896579 41763 + protein coding gene regulating synaptic membrane exocytosis 3
Tssr38807 4 120854847 to 120854867 20 + TSS region transcription start site region 38807
D4Mit156 4 120865857 to 120866006 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 156
Gm12871 4 120901223 to 120901660 437 + pseudogene predicted gene 12871
Gm24678 4 120903460 to 120903563 103 + snRNA gene predicted gene, 24678
Exo5 4 120921202 to 120925005 3803 - protein coding gene exonuclease 5
Cpgi14725 4 120924803 to 120925278 475 CpG island CpG island 14725
Tssr43163 4 120924914 to 120924925 11 - TSS region transcription start site region 43163
Tssr43164 4 120924950 to 120925032 82 - TSS region transcription start site region 43164
Tssr38808 4 120925110 to 120925178 68 + TSS region transcription start site region 38808
Zfp69 4 120930137 to 120951699 21562 - protein coding gene zinc finger protein 69
Cpgi14726 4 120930551 to 120931102 551 CpG island CpG island 14726
Cpgi14727 4 120951144 to 120952014 870 CpG island CpG island 14727
Tssr43165 4 120951664 to 120951697 33 - TSS region transcription start site region 43165
Tssr38809 4 120951817 to 120951840 23 + TSS region transcription start site region 38809
Tssr43166 4 120965835 to 120965846 11 - TSS region transcription start site region 43166
Smap2 4 120968317 to 121017247 48930 - protein coding gene small ArfGAP 2
Tssr43167 4 120968825 to 120968857 32 - TSS region transcription start site region 43167
Tssr43168 4 120968901 to 120968920 19 - TSS region transcription start site region 43168
Tssr38810 4 120969254 to 120969280 26 + TSS region transcription start site region 38810
Tssr43169 4 120972112 to 120972125 13 - TSS region transcription start site region 43169
Mir7015 4 120973259 to 120973322 63 - miRNA gene microRNA 7015
Tssr43170 4 120975006 to 120975023 17 - TSS region transcription start site region 43170
Tssr43171 4 120975180 to 120975189 9 - TSS region transcription start site region 43171
Tssr43172 4 120975406 to 120975432 26 - TSS region transcription start site region 43172
Tssr43173 4 120975442 to 120975465 23 - TSS region transcription start site region 43173
Tssr43174 4 120975466 to 120975474 8 - TSS region transcription start site region 43174
Tssr43175 4 120975519 to 120975584 65 - TSS region transcription start site region 43175
Tssr43176 4 120975604 to 120975616 12 - TSS region transcription start site region 43176
Tssr43177 4 120980089 to 120980102 13 - TSS region transcription start site region 43177
Tssr43178 4 120985247 to 120985260 13 - TSS region transcription start site region 43178
Tssr43179 4 120985288 to 120985303 15 - TSS region transcription start site region 43179
Tssr43180 4 121008709 to 121008725 16 - TSS region transcription start site region 43180
Tssr43181 4 121014619 to 121014640 21 - TSS region transcription start site region 43181
Tssr38811 4 121016070 to 121016102 32 + TSS region transcription start site region 38811
Cpgi14728 4 121016389 to 121017405 1016 CpG island CpG island 14728
Tssr43182 4 121016980 to 121017008 28 - TSS region transcription start site region 43182
Tssr43183 4 121017147 to 121017199 52 - TSS region transcription start site region 43183
Tssr43184 4 121017201 to 121017261 60 - TSS region transcription start site region 43184
Cpgi14729 4 121017882 to 121018239 357 CpG island CpG island 14729
Cpgi14730 4 121039522 to 121040402 880 CpG island CpG island 14730
Tssr38812 4 121039556 to 121039680 124 + TSS region transcription start site region 38812
Col9a2 4 121039566 to 121055325 15759 + protein coding gene collagen, type IX, alpha 2
Tssr38813 4 121039681 to 121039697 16 + TSS region transcription start site region 38813
Tssr38814 4 121039701 to 121039712 11 + TSS region transcription start site region 38814
Tssr38815 4 121041759 to 121041771 12 + TSS region transcription start site region 38815
Cpgi14731 4 121052946 to 121053154 208 CpG island CpG island 14731
Tssr38816 4 121053030 to 121053043 13 + TSS region transcription start site region 38816
Tssr1283 4 121055313 to 121055324 11 - TSS region transcription start site region 1283
Zmpste24 4 121059237 to 121098241 39004 - protein coding gene zinc metallopeptidase, STE24
Gm26186 4 121075798 to 121075922 124 - snoRNA gene predicted gene, 26186
Tssr43185 4 121078740 to 121078751 11 - TSS region transcription start site region 43185
Gm23540 4 121083986 to 121084149 163 - snRNA gene predicted gene, 23540
Tssr1284 4 121084144 to 121084147 3 - TSS region transcription start site region 1284
Tssr38817 4 121094002 to 121094008 6 + TSS region transcription start site region 38817
Cpgi14732 4 121097676 to 121098392 716 CpG island CpG island 14732
Tssr43186 4 121098022 to 121098089 67 - TSS region transcription start site region 43186
Tssr43187 4 121098140 to 121098151 11 - TSS region transcription start site region 43187
Tssr43188 4 121098157 to 121098171 14 - TSS region transcription start site region 43188
Tssr43189 4 121098190 to 121098250 60 - TSS region transcription start site region 43189
Tssr43190 4 121098251 to 121098262 11 - TSS region transcription start site region 43190
Tmco2 4 121105651 to 121109226 3575 - protein coding gene transmembrane and coiled-coil domains 2
Tssr43191 4 121109184 to 121109193 9 - TSS region transcription start site region 43191
Tssr43192 4 121109199 to 121109231 32 - TSS region transcription start site region 43192
Tssr43193 4 121109239 to 121109253 14 - TSS region transcription start site region 43193
Gm12882 4 121114789 to 121115305 516 - pseudogene predicted gene 12882
Tssr43194 4 121115343 to 121115344 1 - TSS region transcription start site region 43194
Gm12881 4 121120874 to 121121296 422 - pseudogene predicted gene 12881
Gm12879 4 121130118 to 121131299 1181 + pseudogene predicted gene 12879
Tssr38818 4 121134654 to 121134659 5 + TSS region transcription start site region 38818
Gm22982 4 121134657 to 121134975 318 + unclassified non-coding RNA gene predicted gene, 22982
Rlf 4 121145373 to 121215084 69711 - protein coding gene rearranged L-myc fusion sequence
Tssr43195 4 121196488 to 121196492 4 - TSS region transcription start site region 43195
Cpgi14733 4 121214520 to 121215411 891 CpG island CpG island 14733
Tssr43196 4 121215071 to 121215114 43 - TSS region transcription start site region 43196
Tssr38819 4 121215291 to 121215302 11 + TSS region transcription start site region 38819
Gm12890 4 121227101 to 121227473 372 - pseudogene predicted gene 12890
Gm30102 4 121230920 to 121239213 8293 + lncRNA gene predicted gene, 30102
Gm40239 4 121235690 to 121241508 5818 - lncRNA gene predicted gene, 40239
Gm12888 4 121316316 to 121324917 8601 - protein coding gene predicted gene 12888
Tssr43197 4 121324912 to 121324928 16 - TSS region transcription start site region 43197
Gm12889 4 121379794 to 121380034 240 + pseudogene predicted gene 12889
Gm12885 4 121380595 to 121380922 327 + pseudogene predicted gene 12885
Gm12884 4 121381429 to 121381753 324 + pseudogene predicted gene 12884
Gm12883 4 121392992 to 121396557 3565 + pseudogene predicted gene 12883
Gm8359 4 121394203 to 121396557 2354 - protein coding gene predicted gene 8359
Tssr43198 4 121396576 to 121396585 9 - TSS region transcription start site region 43198
Gm12886 4 121414735 to 121423099 8364 - protein coding gene predicted gene 12886
Gm12880 4 121476810 to 121479450 2640 - pseudogene predicted gene 12880
Gm26162 4 121509472 to 121509603 131 + snoRNA gene predicted gene, 26162
Tssr43199 4 121518945 to 121518960 15 - TSS region transcription start site region 43199
Tssr1285 4 121608995 to 121608997 2 + TSS region transcription start site region 1285
Gm12887 4 121614271 to 121622103 7832 - protein coding gene predicted gene 12887
Gm12878 4 121641446 to 121641777 331 + pseudogene predicted gene 12878