Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:120571909-120921969

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iva1 4 117214774 to 120866006 3651232 QTL isovaleric acid smelling 1
Tssr38798 4 120588728 to 120588739 11 + TSS region transcription start site region 38798
Gm8439 4 120588745 to 120609673 20928 + protein coding gene predicted gene 8439
D4Mit76 4 120605063 to 120605244 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 76
Tssr43153 4 120613870 to 120613882 12 - TSS region transcription start site region 43153
Tssr38799 4 120615816 to 120615832 16 + TSS region transcription start site region 38799
Gm12860 4 120615840 to 120622682 6842 + lincRNA gene predicted gene 12860
Gm45579 4 120644219 to 120648137 3918 - lincRNA gene predicted gene 45579
Cpgi14716 4 120649455 to 120650367 912 CpG island CpG island 14716
Gm29891 4 120659638 to 120663276 3638 + lncRNA gene predicted gene, 29891
D4Dcr19 4 120665728 to 120665823 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 19
Cpgi14717 4 120666463 to 120667695 1232 CpG island CpG island 14717
Tssr38800 4 120666562 to 120666579 17 + TSS region transcription start site region 38800
Cited4 4 120666572 to 120667820 1248 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
Tssr38801 4 120666614 to 120666623 9 + TSS region transcription start site region 38801
Tssr38802 4 120666935 to 120666943 8 + TSS region transcription start site region 38802
Tssr38803 4 120667159 to 120667172 13 + TSS region transcription start site region 38803
Kcnq4 4 120696134 to 120747491 51357 - protein coding gene potassium voltage-gated channel, subfamily Q, member 4
Cpgi14718 4 120697853 to 120698256 403 CpG island CpG island 14718
Cpgi14719 4 120716392 to 120716991 599 CpG island CpG island 14719
Cpgi14720 4 120731185 to 120731584 399 CpG island CpG island 14720
Cpgi14721 4 120746482 to 120748285 1803 CpG island CpG island 14721
Tssr43154 4 120746909 to 120746969 60 - TSS region transcription start site region 43154
Tssr43155 4 120747395 to 120747404 9 - TSS region transcription start site region 43155
Cpgi14722 4 120748486 to 120748862 376 CpG island CpG island 14722
Nfyc 4 120757438 to 120831572 74134 - protein coding gene nuclear transcription factor-Y gamma
Mirc39 4 120769534 to 120772697 3163 complex/cluster/region micro RNA cluster 39, including Mir30c-1 through Mir31e
Mir30c-1 4 120769534 to 120769622 88 - miRNA gene microRNA 30c-1
Mir30f 4 120772606 to 120772697 91 + miRNA gene microRNA 30f
Mir30e 4 120772606 to 120772697 91 - miRNA gene microRNA 30e
Tssr43156 4 120797822 to 120797826 4 - TSS region transcription start site region 43156
Tssr43157 4 120810409 to 120810413 4 - TSS region transcription start site region 43157
Tssr43158 4 120814110 to 120814116 6 - TSS region transcription start site region 43158
Tssr43159 4 120815703 to 120815761 58 - TSS region transcription start site region 43159
Cpgi14723 4 120824837 to 120826131 1294 CpG island CpG island 14723
Tssr43160 4 120825165 to 120825212 47 - TSS region transcription start site region 43160
Tssr38804 4 120825318 to 120825369 51 + TSS region transcription start site region 38804
Tssr43161 4 120825665 to 120825680 15 - TSS region transcription start site region 43161
Tssr43162 4 120825751 to 120825796 45 - TSS region transcription start site region 43162
Gm23936 4 120837488 to 120837597 109 + miRNA gene predicted gene, 23936
D4Dcr20 4 120850521 to 120850616 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 20
Cpgi14724 4 120854648 to 120855509 861 CpG island CpG island 14724
Tssr38805 4 120854779 to 120854784 5 + TSS region transcription start site region 38805
Tssr38806 4 120854786 to 120854843 57 + TSS region transcription start site region 38806
Rims3 4 120854816 to 120896579 41763 + protein coding gene regulating synaptic membrane exocytosis 3
Tssr38807 4 120854847 to 120854867 20 + TSS region transcription start site region 38807
D4Mit156 4 120865857 to 120866006 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 156
Gm12871 4 120901223 to 120901660 437 + pseudogene predicted gene 12871
Gm24678 4 120903460 to 120903563 103 + snRNA gene predicted gene, 24678
Exo5 4 120921202 to 120925005 3803 - protein coding gene exonuclease 5