Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:120035259-120775287

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
Hivep3 4 119733785 to 120138045 404260 + protein coding gene human immunodeficiency virus type I enhancer binding protein 3
Gm38632 4 120004621 to 120049535 44914 - lncRNA gene predicted gene, 38632
Gm36215 4 120065760 to 120074733 8973 - lncRNA gene predicted gene, 36215
Tssr38766 4 120095113 to 120095154 41 + TSS region transcription start site region 38766
Tssr38767 4 120096565 to 120096573 8 + TSS region transcription start site region 38767
Tssr38768 4 120097185 to 120097206 21 + TSS region transcription start site region 38768
Tssr38769 4 120097723 to 120097741 18 + TSS region transcription start site region 38769
Tssr38770 4 120097900 to 120097947 47 + TSS region transcription start site region 38770
Tssr38771 4 120134408 to 120134427 19 + TSS region transcription start site region 38771
Tssr38772 4 120134432 to 120134450 18 + TSS region transcription start site region 38772
Tssr43146 4 120134631 to 120134649 18 - TSS region transcription start site region 43146
Tssr38773 4 120134640 to 120134677 37 + TSS region transcription start site region 38773
Tssr38774 4 120134931 to 120134942 11 + TSS region transcription start site region 38774
Tssr38775 4 120134959 to 120134971 12 + TSS region transcription start site region 38775
Tssr38776 4 120136148 to 120136177 29 + TSS region transcription start site region 38776
Tssr38777 4 120136252 to 120136269 17 + TSS region transcription start site region 38777
Tssr38778 4 120136290 to 120136307 17 + TSS region transcription start site region 38778
Tssr38779 4 120136311 to 120136326 15 + TSS region transcription start site region 38779
Tssr38780 4 120137672 to 120137683 11 + TSS region transcription start site region 38780
Cpgi14709 4 120148343 to 120149156 813 CpG island CpG island 14709
Gm36134 4 120154185 to 120262151 107966 - lncRNA gene predicted gene, 36134
Edn2 4 120161206 to 120167360 6154 + protein coding gene endothelin 2
Cpgi14710 4 120161353 to 120161723 370 CpG island CpG island 14710
Tssr38781 4 120161419 to 120161425 6 + TSS region transcription start site region 38781
Gm36073 4 120176181 to 120181275 5094 + lncRNA gene predicted gene, 36073
Gm36013 4 120190783 to 120200316 9533 + lncRNA gene predicted gene, 36013
Cpgi14711 4 120266959 to 120269245 2286 CpG island CpG island 14711
Foxo6 4 120267078 to 120287261 20183 - protein coding gene forkhead box O6
Cpgi14712 4 120282308 to 120283292 984 CpG island CpG island 14712
Cpgi14713 4 120286625 to 120288337 1712 CpG island CpG island 14713
Tssr43147 4 120286985 to 120286988 3 - TSS region transcription start site region 43147
Tssr43148 4 120287670 to 120287683 13 - TSS region transcription start site region 43148
Tssr43149 4 120287696 to 120287754 58 - TSS region transcription start site region 43149
Tssr38782 4 120291343 to 120291354 11 + TSS region transcription start site region 38782
Foxo6os 4 120291350 to 120303892 12542 + antisense lncRNA gene forkhead box O6, opposite strand
Gm36499 4 120309702 to 120312945 3243 - lncRNA gene predicted gene, 36499
Gm36574 4 120319102 to 120397176 78074 - lncRNA gene predicted gene, 36574
Tssr38783 4 120338396 to 120338398 2 + TSS region transcription start site region 38783
Cpgi14714 4 120404925 to 120406065 1140 CpG island CpG island 14714
Tssr38784 4 120405173 to 120405221 48 + TSS region transcription start site region 38784
Tssr38785 4 120405259 to 120405287 28 + TSS region transcription start site region 38785
Scmh1 4 120405281 to 120530186 124905 + protein coding gene sex comb on midleg homolog 1
Tssr38786 4 120405288 to 120405404 116 + TSS region transcription start site region 38786
Tssr38787 4 120432852 to 120432858 6 + TSS region transcription start site region 38787
Tssr38788 4 120450001 to 120450006 5 + TSS region transcription start site region 38788
Tssr38789 4 120450409 to 120450412 3 + TSS region transcription start site region 38789
Tssr38790 4 120483298 to 120483303 5 + TSS region transcription start site region 38790
Tssr38791 4 120516774 to 120516788 14 + TSS region transcription start site region 38791
Tssr38792 4 120517494 to 120517500 6 + TSS region transcription start site region 38792
Tssr38793 4 120517587 to 120517615 28 + TSS region transcription start site region 38793
Tssr38794 4 120517616 to 120517638 22 + TSS region transcription start site region 38794
Tssr38795 4 120517640 to 120517659 19 + TSS region transcription start site region 38795
Tssr43150 4 120532109 to 120532122 13 - TSS region transcription start site region 43150
Tssr38796 4 120532219 to 120532256 37 + TSS region transcription start site region 38796
Slfnl1 4 120532231 to 120536661 4430 + protein coding gene schlafen like 1
Tssr38797 4 120532260 to 120532265 5 + TSS region transcription start site region 38797
Ctps 4 120539868 to 120570276 30408 - protein coding gene cytidine 5'-triphosphate synthase
Cpgi14715 4 120569485 to 120570769 1284 CpG island CpG island 14715
Tssr43151 4 120570216 to 120570234 18 - TSS region transcription start site region 43151
Tssr43152 4 120570252 to 120570299 47 - TSS region transcription start site region 43152
Tssr1282 4 120570307 to 120570311 4 - TSS region transcription start site region 1282
Tssr38798 4 120588728 to 120588739 11 + TSS region transcription start site region 38798
Gm8439 4 120588745 to 120609673 20928 + protein coding gene predicted gene 8439
D4Mit76 4 120605063 to 120605244 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 76
Tssr43153 4 120613870 to 120613882 12 - TSS region transcription start site region 43153
Tssr38799 4 120615816 to 120615832 16 + TSS region transcription start site region 38799
Gm12860 4 120615840 to 120622682 6842 + lincRNA gene predicted gene 12860
Gm45579 4 120644219 to 120648137 3918 - lincRNA gene predicted gene 45579
Cpgi14716 4 120649455 to 120650367 912 CpG island CpG island 14716
Gm29891 4 120659638 to 120663276 3638 + lncRNA gene predicted gene, 29891
D4Dcr19 4 120665728 to 120665823 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 19
Cpgi14717 4 120666463 to 120667695 1232 CpG island CpG island 14717
Tssr38800 4 120666562 to 120666579 17 + TSS region transcription start site region 38800
Cited4 4 120666572 to 120667820 1248 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
Tssr38801 4 120666614 to 120666623 9 + TSS region transcription start site region 38801
Tssr38802 4 120666935 to 120666943 8 + TSS region transcription start site region 38802
Tssr38803 4 120667159 to 120667172 13 + TSS region transcription start site region 38803
Kcnq4 4 120696134 to 120747491 51357 - protein coding gene potassium voltage-gated channel, subfamily Q, member 4
Cpgi14718 4 120697853 to 120698256 403 CpG island CpG island 14718
Cpgi14719 4 120716392 to 120716991 599 CpG island CpG island 14719
Cpgi14720 4 120731185 to 120731584 399 CpG island CpG island 14720
Cpgi14721 4 120746482 to 120748285 1803 CpG island CpG island 14721
Tssr43154 4 120746909 to 120746969 60 - TSS region transcription start site region 43154
Tssr43155 4 120747395 to 120747404 9 - TSS region transcription start site region 43155
Cpgi14722 4 120748486 to 120748862 376 CpG island CpG island 14722
Nfyc 4 120757438 to 120831572 74134 - protein coding gene nuclear transcription factor-Y gamma
Mirc39 4 120769534 to 120772697 3163 complex/cluster/region micro RNA cluster 39, including Mir30c-1 through Mir31e
Mir30c-1 4 120769534 to 120769622 88 - miRNA gene microRNA 30c-1
Mir30f 4 120772606 to 120772697 91 + miRNA gene microRNA 30f
Mir30e 4 120772606 to 120772697 91 - miRNA gene microRNA 30e