Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:119441601-119873945

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zmynd12 4 119422657 to 119453899 31242 + protein coding gene zinc finger, MYND domain containing 12
D4Ertd669e 4 119460875 to 119461084 209 DNA segment DNA segment, Chr 4, ERATO Doi 669, expressed
Rimkla 4 119465283 to 119492598 27315 - protein coding gene ribosomal modification protein rimK-like family member A
Cpgi14703 4 119492028 to 119493123 1095 CpG island CpG island 14703
Tssr43121 4 119492547 to 119492561 14 - TSS region transcription start site region 43121
Tssr43122 4 119492563 to 119492618 55 - TSS region transcription start site region 43122
Gm12954 4 119501865 to 119502546 681 - pseudogene predicted gene 12954
Gm12956 4 119509648 to 119510061 413 - pseudogene predicted gene 12956
Gm12955 4 119519129 to 119520082 953 - pseudogene predicted gene 12955
Tssr38737 4 119520956 to 119520957 1 + TSS region transcription start site region 38737
Cpgi14704 4 119520988 to 119521342 354 CpG island CpG island 14704
Gm12957 4 119520990 to 119521366 376 + pseudogene predicted gene 12957
Rnu6-ps2 4 119528000 to 119528106 106 + pseudogene U6 small nuclear RNA, pseudogene 2
Frg2f1 4 119530308 to 119538769 8461 - protein coding gene FSHD region gene 2 family member 1
Cpgi14705 4 119538943 to 119540568 1625 CpG island CpG island 14705
Tssr38738 4 119539140 to 119539151 11 + TSS region transcription start site region 38738
Tssr43123 4 119539516 to 119539544 28 - TSS region transcription start site region 43123
Tssr38739 4 119539652 to 119539698 46 + TSS region transcription start site region 38739
Foxj3 4 119539661 to 119629119 89458 + protein coding gene forkhead box J3
Tssr38740 4 119539716 to 119539727 11 + TSS region transcription start site region 38740
Tssr43124 4 119540013 to 119540014 1 - TSS region transcription start site region 43124
Tssr43125 4 119540385 to 119540416 31 - TSS region transcription start site region 43125
Tssr38741 4 119540489 to 119540499 10 + TSS region transcription start site region 38741
Tssr38742 4 119540513 to 119540535 22 + TSS region transcription start site region 38742
Tssr38743 4 119544042 to 119544046 4 + TSS region transcription start site region 38743
Tssr38744 4 119553169 to 119553173 4 + TSS region transcription start site region 38744
Gm12959 4 119553656 to 119554058 402 - pseudogene predicted gene 12959
Tssr38745 4 119619279 to 119619292 13 + TSS region transcription start site region 38745
Tssr38746 4 119619294 to 119619321 27 + TSS region transcription start site region 38746
Tssr38747 4 119637692 to 119637697 5 + TSS region transcription start site region 38747
Tssr38748 4 119637704 to 119637721 17 + TSS region transcription start site region 38748
Tssr38749 4 119637727 to 119637739 12 + TSS region transcription start site region 38749
Guca2a 4 119637732 to 119639465 1733 + protein coding gene guanylate cyclase activator 2a (guanylin)
Tssr43126 4 119638790 to 119638812 22 - TSS region transcription start site region 43126
Guca2b 4 119656601 to 119658945 2344 - protein coding gene guanylate cyclase activator 2b (retina)
Tssr43127 4 119656635 to 119656648 13 - TSS region transcription start site region 43127
Tssr43128 4 119656709 to 119656719 10 - TSS region transcription start site region 43128
Tssr43129 4 119656739 to 119656762 23 - TSS region transcription start site region 43129
Tssr43130 4 119656766 to 119656777 11 - TSS region transcription start site region 43130
Tssr43131 4 119657561 to 119657576 15 - TSS region transcription start site region 43131
Tssr43132 4 119657594 to 119657613 19 - TSS region transcription start site region 43132
Tssr43133 4 119657617 to 119657636 19 - TSS region transcription start site region 43133
Tssr43134 4 119657647 to 119657665 18 - TSS region transcription start site region 43134
Tssr43135 4 119658088 to 119658108 20 - TSS region transcription start site region 43135
Tssr43136 4 119658114 to 119658128 14 - TSS region transcription start site region 43136
Tssr38750 4 119658520 to 119658543 23 + TSS region transcription start site region 38750
Tssr43137 4 119658631 to 119658646 15 - TSS region transcription start site region 43137
Tssr43138 4 119658906 to 119658922 16 - TSS region transcription start site region 43138
Gm35761 4 119658957 to 119663760 4803 + lncRNA gene predicted gene, 35761
Gm35957 4 119695690 to 119724141 28451 - lncRNA gene predicted gene, 35957
D4Mit334 4 119711101 to 119711223 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 334
Cpgi14706 4 119733396 to 119734470 1074 CpG island CpG island 14706
Tssr43139 4 119733575 to 119733586 11 - TSS region transcription start site region 43139
Tssr38751 4 119733784 to 119733806 22 + TSS region transcription start site region 38751
Hivep3 4 119733785 to 120138045 404260 + protein coding gene human immunodeficiency virus type I enhancer binding protein 3
Tssr38752 4 119733807 to 119733834 27 + TSS region transcription start site region 38752
D4Mit258 4 119772840 to 119772986 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 258
Tssr38753 4 119813056 to 119813103 47 + TSS region transcription start site region 38753
Tssr38754 4 119814307 to 119814349 42 + TSS region transcription start site region 38754
Tssr38755 4 119814375 to 119814388 13 + TSS region transcription start site region 38755
Tssr38756 4 119814504 to 119814526 22 + TSS region transcription start site region 38756
Tssr38757 4 119814533 to 119814563 30 + TSS region transcription start site region 38757
Cpgi14707 4 119814791 to 119815511 720 CpG island CpG island 14707
D4Ertd804e 4 119829069 to 119829270 201 DNA segment DNA segment, Chr 4, ERATO Doi 804, expressed
Tssr38758 4 119847785 to 119847814 29 + TSS region transcription start site region 38758