Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:119439631-120829649

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
Zmynd12 4 119422657 to 119453899 31242 + protein coding gene zinc finger, MYND domain containing 12
D4Ertd669e 4 119460875 to 119461084 209 DNA segment DNA segment, Chr 4, ERATO Doi 669, expressed
Rimkla 4 119465283 to 119492598 27315 - protein coding gene ribosomal modification protein rimK-like family member A
Cpgi14703 4 119492028 to 119493123 1095 CpG island CpG island 14703
Tssr43121 4 119492547 to 119492561 14 - TSS region transcription start site region 43121
Tssr43122 4 119492563 to 119492618 55 - TSS region transcription start site region 43122
Gm12954 4 119501865 to 119502546 681 - pseudogene predicted gene 12954
Gm12956 4 119509648 to 119510061 413 - pseudogene predicted gene 12956
Gm12955 4 119519129 to 119520082 953 - pseudogene predicted gene 12955
Tssr38737 4 119520956 to 119520957 1 + TSS region transcription start site region 38737
Cpgi14704 4 119520988 to 119521342 354 CpG island CpG island 14704
Gm12957 4 119520990 to 119521366 376 + pseudogene predicted gene 12957
Rnu6-ps2 4 119528000 to 119528106 106 + pseudogene U6 small nuclear RNA, pseudogene 2
Frg2f1 4 119530308 to 119538769 8461 - protein coding gene FSHD region gene 2 family member 1
Cpgi14705 4 119538943 to 119540568 1625 CpG island CpG island 14705
Tssr38738 4 119539140 to 119539151 11 + TSS region transcription start site region 38738
Tssr43123 4 119539516 to 119539544 28 - TSS region transcription start site region 43123
Tssr38739 4 119539652 to 119539698 46 + TSS region transcription start site region 38739
Foxj3 4 119539661 to 119629119 89458 + protein coding gene forkhead box J3
Tssr38740 4 119539716 to 119539727 11 + TSS region transcription start site region 38740
Tssr43124 4 119540013 to 119540014 1 - TSS region transcription start site region 43124
Tssr43125 4 119540385 to 119540416 31 - TSS region transcription start site region 43125
Tssr38741 4 119540489 to 119540499 10 + TSS region transcription start site region 38741
Tssr38742 4 119540513 to 119540535 22 + TSS region transcription start site region 38742
Tssr38743 4 119544042 to 119544046 4 + TSS region transcription start site region 38743
Tssr38744 4 119553169 to 119553173 4 + TSS region transcription start site region 38744
Gm12959 4 119553656 to 119554058 402 - pseudogene predicted gene 12959
Tssr38745 4 119619279 to 119619292 13 + TSS region transcription start site region 38745
Tssr38746 4 119619294 to 119619321 27 + TSS region transcription start site region 38746
Tssr38747 4 119637692 to 119637697 5 + TSS region transcription start site region 38747
Tssr38748 4 119637704 to 119637721 17 + TSS region transcription start site region 38748
Tssr38749 4 119637727 to 119637739 12 + TSS region transcription start site region 38749
Guca2a 4 119637732 to 119639465 1733 + protein coding gene guanylate cyclase activator 2a (guanylin)
Tssr43126 4 119638790 to 119638812 22 - TSS region transcription start site region 43126
Guca2b 4 119656601 to 119658945 2344 - protein coding gene guanylate cyclase activator 2b (retina)
Tssr43127 4 119656635 to 119656648 13 - TSS region transcription start site region 43127
Tssr43128 4 119656709 to 119656719 10 - TSS region transcription start site region 43128
Tssr43129 4 119656739 to 119656762 23 - TSS region transcription start site region 43129
Tssr43130 4 119656766 to 119656777 11 - TSS region transcription start site region 43130
Tssr43131 4 119657561 to 119657576 15 - TSS region transcription start site region 43131
Tssr43132 4 119657594 to 119657613 19 - TSS region transcription start site region 43132
Tssr43133 4 119657617 to 119657636 19 - TSS region transcription start site region 43133
Tssr43134 4 119657647 to 119657665 18 - TSS region transcription start site region 43134
Tssr43135 4 119658088 to 119658108 20 - TSS region transcription start site region 43135
Tssr43136 4 119658114 to 119658128 14 - TSS region transcription start site region 43136
Tssr38750 4 119658520 to 119658543 23 + TSS region transcription start site region 38750
Tssr43137 4 119658631 to 119658646 15 - TSS region transcription start site region 43137
Tssr43138 4 119658906 to 119658922 16 - TSS region transcription start site region 43138
Gm35761 4 119658957 to 119663760 4803 + lncRNA gene predicted gene, 35761
Gm35957 4 119695690 to 119724141 28451 - lncRNA gene predicted gene, 35957
D4Mit334 4 119711101 to 119711223 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 334
Cpgi14706 4 119733396 to 119734470 1074 CpG island CpG island 14706
Tssr43139 4 119733575 to 119733586 11 - TSS region transcription start site region 43139
Tssr38751 4 119733784 to 119733806 22 + TSS region transcription start site region 38751
Hivep3 4 119733785 to 120138045 404260 + protein coding gene human immunodeficiency virus type I enhancer binding protein 3
Tssr38752 4 119733807 to 119733834 27 + TSS region transcription start site region 38752
D4Mit258 4 119772840 to 119772986 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 258
Tssr38753 4 119813056 to 119813103 47 + TSS region transcription start site region 38753
Tssr38754 4 119814307 to 119814349 42 + TSS region transcription start site region 38754
Tssr38755 4 119814375 to 119814388 13 + TSS region transcription start site region 38755
Tssr38756 4 119814504 to 119814526 22 + TSS region transcription start site region 38756
Tssr38757 4 119814533 to 119814563 30 + TSS region transcription start site region 38757
Cpgi14707 4 119814791 to 119815511 720 CpG island CpG island 14707
D4Ertd804e 4 119829069 to 119829270 201 DNA segment DNA segment, Chr 4, ERATO Doi 804, expressed
Tssr38758 4 119847785 to 119847814 29 + TSS region transcription start site region 38758
Tssr38759 4 119895454 to 119895460 6 + TSS region transcription start site region 38759
Tssr38760 4 119911859 to 119911867 8 + TSS region transcription start site region 38760
Tssr43140 4 119962533 to 119962543 10 - TSS region transcription start site region 43140
Tssr43141 4 119966828 to 119966843 15 - TSS region transcription start site region 43141
Tssr43142 4 119966885 to 119966892 7 - TSS region transcription start site region 43142
Tssr43143 4 119977857 to 119977863 6 - TSS region transcription start site region 43143
Gm38632 4 120004621 to 120049535 44914 - lncRNA gene predicted gene, 38632
Cpgi14708 4 120032286 to 120033538 1252 CpG island CpG island 14708
Tssr43144 4 120032366 to 120032386 20 - TSS region transcription start site region 43144
Tssr38761 4 120032489 to 120032524 35 + TSS region transcription start site region 38761
Tssr38762 4 120032535 to 120032547 12 + TSS region transcription start site region 38762
Tssr38763 4 120032734 to 120032753 19 + TSS region transcription start site region 38763
Tssr38764 4 120032766 to 120032866 100 + TSS region transcription start site region 38764
Tssr38765 4 120032876 to 120032907 31 + TSS region transcription start site region 38765
Tssr43145 4 120033370 to 120033376 6 - TSS region transcription start site region 43145
Gm36215 4 120065760 to 120074733 8973 - lncRNA gene predicted gene, 36215
Tssr38766 4 120095113 to 120095154 41 + TSS region transcription start site region 38766
Tssr38767 4 120096565 to 120096573 8 + TSS region transcription start site region 38767
Tssr38768 4 120097185 to 120097206 21 + TSS region transcription start site region 38768
Tssr38769 4 120097723 to 120097741 18 + TSS region transcription start site region 38769
Tssr38770 4 120097900 to 120097947 47 + TSS region transcription start site region 38770
Tssr38771 4 120134408 to 120134427 19 + TSS region transcription start site region 38771
Tssr38772 4 120134432 to 120134450 18 + TSS region transcription start site region 38772
Tssr43146 4 120134631 to 120134649 18 - TSS region transcription start site region 43146
Tssr38773 4 120134640 to 120134677 37 + TSS region transcription start site region 38773
Tssr38774 4 120134931 to 120134942 11 + TSS region transcription start site region 38774
Tssr38775 4 120134959 to 120134971 12 + TSS region transcription start site region 38775
Tssr38776 4 120136148 to 120136177 29 + TSS region transcription start site region 38776
Tssr38777 4 120136252 to 120136269 17 + TSS region transcription start site region 38777
Tssr38778 4 120136290 to 120136307 17 + TSS region transcription start site region 38778
Tssr38779 4 120136311 to 120136326 15 + TSS region transcription start site region 38779
Tssr38780 4 120137672 to 120137683 11 + TSS region transcription start site region 38780
Cpgi14709 4 120148343 to 120149156 813 CpG island CpG island 14709
Gm36134 4 120154185 to 120262151 107966 - lncRNA gene predicted gene, 36134
Edn2 4 120161206 to 120167360 6154 + protein coding gene endothelin 2
Cpgi14710 4 120161353 to 120161723 370 CpG island CpG island 14710
Tssr38781 4 120161419 to 120161425 6 + TSS region transcription start site region 38781
Gm36073 4 120176181 to 120181275 5094 + lncRNA gene predicted gene, 36073
Gm36013 4 120190783 to 120200316 9533 + lncRNA gene predicted gene, 36013
Cpgi14711 4 120266959 to 120269245 2286 CpG island CpG island 14711
Foxo6 4 120267078 to 120287261 20183 - protein coding gene forkhead box O6
Cpgi14712 4 120282308 to 120283292 984 CpG island CpG island 14712
Cpgi14713 4 120286625 to 120288337 1712 CpG island CpG island 14713
Tssr43147 4 120286985 to 120286988 3 - TSS region transcription start site region 43147
Tssr43148 4 120287670 to 120287683 13 - TSS region transcription start site region 43148
Tssr43149 4 120287696 to 120287754 58 - TSS region transcription start site region 43149
Tssr38782 4 120291343 to 120291354 11 + TSS region transcription start site region 38782
Foxo6os 4 120291350 to 120303892 12542 + antisense lncRNA gene forkhead box O6, opposite strand
Gm36499 4 120309702 to 120312945 3243 - lncRNA gene predicted gene, 36499
Gm36574 4 120319102 to 120397176 78074 - lncRNA gene predicted gene, 36574
Tssr38783 4 120338396 to 120338398 2 + TSS region transcription start site region 38783
Cpgi14714 4 120404925 to 120406065 1140 CpG island CpG island 14714
Tssr38784 4 120405173 to 120405221 48 + TSS region transcription start site region 38784
Tssr38785 4 120405259 to 120405287 28 + TSS region transcription start site region 38785
Scmh1 4 120405281 to 120530186 124905 + protein coding gene sex comb on midleg homolog 1
Tssr38786 4 120405288 to 120405404 116 + TSS region transcription start site region 38786
Tssr38787 4 120432852 to 120432858 6 + TSS region transcription start site region 38787
Tssr38788 4 120450001 to 120450006 5 + TSS region transcription start site region 38788
Tssr38789 4 120450409 to 120450412 3 + TSS region transcription start site region 38789
Tssr38790 4 120483298 to 120483303 5 + TSS region transcription start site region 38790
Tssr38791 4 120516774 to 120516788 14 + TSS region transcription start site region 38791
Tssr38792 4 120517494 to 120517500 6 + TSS region transcription start site region 38792
Tssr38793 4 120517587 to 120517615 28 + TSS region transcription start site region 38793
Tssr38794 4 120517616 to 120517638 22 + TSS region transcription start site region 38794
Tssr38795 4 120517640 to 120517659 19 + TSS region transcription start site region 38795
Tssr43150 4 120532109 to 120532122 13 - TSS region transcription start site region 43150
Tssr38796 4 120532219 to 120532256 37 + TSS region transcription start site region 38796
Slfnl1 4 120532231 to 120536661 4430 + protein coding gene schlafen like 1
Tssr38797 4 120532260 to 120532265 5 + TSS region transcription start site region 38797
Ctps 4 120539868 to 120570276 30408 - protein coding gene cytidine 5'-triphosphate synthase
Cpgi14715 4 120569485 to 120570769 1284 CpG island CpG island 14715
Tssr43151 4 120570216 to 120570234 18 - TSS region transcription start site region 43151
Tssr43152 4 120570252 to 120570299 47 - TSS region transcription start site region 43152
Tssr1282 4 120570307 to 120570311 4 - TSS region transcription start site region 1282
Tssr38798 4 120588728 to 120588739 11 + TSS region transcription start site region 38798
Gm8439 4 120588745 to 120609673 20928 + protein coding gene predicted gene 8439
D4Mit76 4 120605063 to 120605244 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 76
Tssr43153 4 120613870 to 120613882 12 - TSS region transcription start site region 43153
Tssr38799 4 120615816 to 120615832 16 + TSS region transcription start site region 38799
Gm12860 4 120615840 to 120622682 6842 + lincRNA gene predicted gene 12860
Gm45579 4 120644219 to 120648137 3918 - lincRNA gene predicted gene 45579
Cpgi14716 4 120649455 to 120650367 912 CpG island CpG island 14716
Gm29891 4 120659638 to 120663276 3638 + lncRNA gene predicted gene, 29891
D4Dcr19 4 120665728 to 120665823 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 19
Cpgi14717 4 120666463 to 120667695 1232 CpG island CpG island 14717
Tssr38800 4 120666562 to 120666579 17 + TSS region transcription start site region 38800
Cited4 4 120666572 to 120667820 1248 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
Tssr38801 4 120666614 to 120666623 9 + TSS region transcription start site region 38801
Tssr38802 4 120666935 to 120666943 8 + TSS region transcription start site region 38802
Tssr38803 4 120667159 to 120667172 13 + TSS region transcription start site region 38803
Kcnq4 4 120696134 to 120747491 51357 - protein coding gene potassium voltage-gated channel, subfamily Q, member 4
Cpgi14718 4 120697853 to 120698256 403 CpG island CpG island 14718
Cpgi14719 4 120716392 to 120716991 599 CpG island CpG island 14719
Cpgi14720 4 120731185 to 120731584 399 CpG island CpG island 14720
Cpgi14721 4 120746482 to 120748285 1803 CpG island CpG island 14721
Tssr43154 4 120746909 to 120746969 60 - TSS region transcription start site region 43154
Tssr43155 4 120747395 to 120747404 9 - TSS region transcription start site region 43155
Cpgi14722 4 120748486 to 120748862 376 CpG island CpG island 14722
Nfyc 4 120757438 to 120831572 74134 - protein coding gene nuclear transcription factor-Y gamma
Mirc39 4 120769534 to 120772697 3163 complex/cluster/region micro RNA cluster 39, including Mir30c-1 through Mir31e
Mir30c-1 4 120769534 to 120769622 88 - miRNA gene microRNA 30c-1
Mir30f 4 120772606 to 120772697 91 + miRNA gene microRNA 30f
Mir30e 4 120772606 to 120772697 91 - miRNA gene microRNA 30e
Tssr43156 4 120797822 to 120797826 4 - TSS region transcription start site region 43156
Tssr43157 4 120810409 to 120810413 4 - TSS region transcription start site region 43157
Tssr43158 4 120814110 to 120814116 6 - TSS region transcription start site region 43158
Tssr43159 4 120815703 to 120815761 58 - TSS region transcription start site region 43159
Cpgi14723 4 120824837 to 120826131 1294 CpG island CpG island 14723
Tssr43160 4 120825165 to 120825212 47 - TSS region transcription start site region 43160
Tssr38804 4 120825318 to 120825369 51 + TSS region transcription start site region 38804
Tssr43161 4 120825665 to 120825680 15 - TSS region transcription start site region 43161
Tssr43162 4 120825751 to 120825796 45 - TSS region transcription start site region 43162