Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:119282785-120412814

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
Ybx1 4 119277981 to 119294604 16623 - protein coding gene Y box protein 1
Cpgi14698 4 119293479 to 119295096 1617 CpG island CpG island 14698
1700102N10Rik 4 119294136 to 119295146 1010 unclassified non-coding RNA gene RIKEN cDNA 1700102N10 gene
Tssr38733 4 119294175 to 119294191 16 + TSS region transcription start site region 38733
Tssr43100 4 119294238 to 119294310 72 - TSS region transcription start site region 43100
Tssr43101 4 119294400 to 119294445 45 - TSS region transcription start site region 43101
Tssr43102 4 119294447 to 119294470 23 - TSS region transcription start site region 43102
Tssr43103 4 119294500 to 119294518 18 - TSS region transcription start site region 43103
Tssr43104 4 119294520 to 119294538 18 - TSS region transcription start site region 43104
Tssr43105 4 119294714 to 119294725 11 - TSS region transcription start site region 43105
Tssr43106 4 119294744 to 119294753 9 - TSS region transcription start site region 43106
Gm37817 4 119295028 to 119295461 433 - unclassified gene predicted gene, 37817
Ppih 4 119300010 to 119320523 20513 - protein coding gene peptidyl prolyl isomerase H
Cpgi14699 4 119320093 to 119320735 642 CpG island CpG island 14699
Tssr43107 4 119320496 to 119320516 20 - TSS region transcription start site region 43107
Tssr38734 4 119320575 to 119320630 55 + TSS region transcription start site region 38734
Ccdc30 4 119322893 to 119415521 92628 - protein coding gene coiled-coil domain containing 30
Tssr43108 4 119333619 to 119333632 13 - TSS region transcription start site region 43108
Ldha-ps2 4 119334389 to 119335445 1056 - pseudogene lactate dehydrogenase A, pseudogene 2
Tssr43109 4 119335543 to 119335544 1 - TSS region transcription start site region 43109
Cpgi14700 4 119359504 to 119359866 362 CpG island CpG island 14700
Tssr43110 4 119359786 to 119359810 24 - TSS region transcription start site region 43110
Tssr43111 4 119359882 to 119359897 15 - TSS region transcription start site region 43111
Tssr43112 4 119359900 to 119359917 17 - TSS region transcription start site region 43112
Tssr43113 4 119383732 to 119383780 48 - TSS region transcription start site region 43113
Tssr43114 4 119383805 to 119383810 5 - TSS region transcription start site region 43114
Tssr43115 4 119383828 to 119383839 11 - TSS region transcription start site region 43115
Tssr43116 4 119404784 to 119404832 48 - TSS region transcription start site region 43116
Cpgi14701 4 119415006 to 119415689 683 CpG island CpG island 14701
Tssr43117 4 119415443 to 119415459 16 - TSS region transcription start site region 43117
Tssr43118 4 119415471 to 119415487 16 - TSS region transcription start site region 43118
Tssr43119 4 119415494 to 119415522 28 - TSS region transcription start site region 43119
Ppcs 4 119418530 to 119422420 3890 - protein coding gene phosphopantothenoylcysteine synthetase
Cpgi14702 4 119421748 to 119423160 1412 CpG island CpG island 14702
Tssr43120 4 119422355 to 119422418 63 - TSS region transcription start site region 43120
Zmynd12 4 119422657 to 119453899 31242 + protein coding gene zinc finger, MYND domain containing 12
Tssr38735 4 119422806 to 119422841 35 + TSS region transcription start site region 38735
Tssr38736 4 119422842 to 119422881 39 + TSS region transcription start site region 38736
D4Ertd669e 4 119460875 to 119461084 209 DNA segment DNA segment, Chr 4, ERATO Doi 669, expressed
Rimkla 4 119465283 to 119492598 27315 - protein coding gene ribosomal modification protein rimK-like family member A
Cpgi14703 4 119492028 to 119493123 1095 CpG island CpG island 14703
Tssr43121 4 119492547 to 119492561 14 - TSS region transcription start site region 43121
Tssr43122 4 119492563 to 119492618 55 - TSS region transcription start site region 43122
Gm12954 4 119501865 to 119502546 681 - pseudogene predicted gene 12954
Gm12956 4 119509648 to 119510061 413 - pseudogene predicted gene 12956
Gm12955 4 119519129 to 119520082 953 - pseudogene predicted gene 12955
Tssr38737 4 119520956 to 119520957 1 + TSS region transcription start site region 38737
Cpgi14704 4 119520988 to 119521342 354 CpG island CpG island 14704
Gm12957 4 119520990 to 119521366 376 + pseudogene predicted gene 12957
Rnu6-ps2 4 119528000 to 119528106 106 + pseudogene U6 small nuclear RNA, pseudogene 2
Frg2f1 4 119530308 to 119538769 8461 - protein coding gene FSHD region gene 2 family member 1
Cpgi14705 4 119538943 to 119540568 1625 CpG island CpG island 14705
Tssr38738 4 119539140 to 119539151 11 + TSS region transcription start site region 38738
Tssr43123 4 119539516 to 119539544 28 - TSS region transcription start site region 43123
Tssr38739 4 119539652 to 119539698 46 + TSS region transcription start site region 38739
Foxj3 4 119539661 to 119629119 89458 + protein coding gene forkhead box J3
Tssr38740 4 119539716 to 119539727 11 + TSS region transcription start site region 38740
Tssr43124 4 119540013 to 119540014 1 - TSS region transcription start site region 43124
Tssr43125 4 119540385 to 119540416 31 - TSS region transcription start site region 43125
Tssr38741 4 119540489 to 119540499 10 + TSS region transcription start site region 38741
Tssr38742 4 119540513 to 119540535 22 + TSS region transcription start site region 38742
Tssr38743 4 119544042 to 119544046 4 + TSS region transcription start site region 38743
Tssr38744 4 119553169 to 119553173 4 + TSS region transcription start site region 38744
Gm12959 4 119553656 to 119554058 402 - pseudogene predicted gene 12959
Tssr38745 4 119619279 to 119619292 13 + TSS region transcription start site region 38745
Tssr38746 4 119619294 to 119619321 27 + TSS region transcription start site region 38746
Tssr38747 4 119637692 to 119637697 5 + TSS region transcription start site region 38747
Tssr38748 4 119637704 to 119637721 17 + TSS region transcription start site region 38748
Tssr38749 4 119637727 to 119637739 12 + TSS region transcription start site region 38749
Guca2a 4 119637732 to 119639465 1733 + protein coding gene guanylate cyclase activator 2a (guanylin)
Tssr43126 4 119638790 to 119638812 22 - TSS region transcription start site region 43126
Guca2b 4 119656601 to 119658945 2344 - protein coding gene guanylate cyclase activator 2b (retina)
Tssr43127 4 119656635 to 119656648 13 - TSS region transcription start site region 43127
Tssr43128 4 119656709 to 119656719 10 - TSS region transcription start site region 43128
Tssr43129 4 119656739 to 119656762 23 - TSS region transcription start site region 43129
Tssr43130 4 119656766 to 119656777 11 - TSS region transcription start site region 43130
Tssr43131 4 119657561 to 119657576 15 - TSS region transcription start site region 43131
Tssr43132 4 119657594 to 119657613 19 - TSS region transcription start site region 43132
Tssr43133 4 119657617 to 119657636 19 - TSS region transcription start site region 43133
Tssr43134 4 119657647 to 119657665 18 - TSS region transcription start site region 43134
Tssr43135 4 119658088 to 119658108 20 - TSS region transcription start site region 43135
Tssr43136 4 119658114 to 119658128 14 - TSS region transcription start site region 43136
Tssr38750 4 119658520 to 119658543 23 + TSS region transcription start site region 38750
Tssr43137 4 119658631 to 119658646 15 - TSS region transcription start site region 43137
Tssr43138 4 119658906 to 119658922 16 - TSS region transcription start site region 43138
Gm35761 4 119658957 to 119663760 4803 + lncRNA gene predicted gene, 35761
Gm35957 4 119695690 to 119724141 28451 - lncRNA gene predicted gene, 35957
D4Mit334 4 119711101 to 119711223 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 334
Cpgi14706 4 119733396 to 119734470 1074 CpG island CpG island 14706
Tssr43139 4 119733575 to 119733586 11 - TSS region transcription start site region 43139
Tssr38751 4 119733784 to 119733806 22 + TSS region transcription start site region 38751
Hivep3 4 119733785 to 120138045 404260 + protein coding gene human immunodeficiency virus type I enhancer binding protein 3
Tssr38752 4 119733807 to 119733834 27 + TSS region transcription start site region 38752
D4Mit258 4 119772840 to 119772986 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 258
Tssr38753 4 119813056 to 119813103 47 + TSS region transcription start site region 38753
Tssr38754 4 119814307 to 119814349 42 + TSS region transcription start site region 38754
Tssr38755 4 119814375 to 119814388 13 + TSS region transcription start site region 38755
Tssr38756 4 119814504 to 119814526 22 + TSS region transcription start site region 38756
Tssr38757 4 119814533 to 119814563 30 + TSS region transcription start site region 38757
Cpgi14707 4 119814791 to 119815511 720 CpG island CpG island 14707
D4Ertd804e 4 119829069 to 119829270 201 DNA segment DNA segment, Chr 4, ERATO Doi 804, expressed
Tssr38758 4 119847785 to 119847814 29 + TSS region transcription start site region 38758
Tssr38759 4 119895454 to 119895460 6 + TSS region transcription start site region 38759
Tssr38760 4 119911859 to 119911867 8 + TSS region transcription start site region 38760
Tssr43140 4 119962533 to 119962543 10 - TSS region transcription start site region 43140
Tssr43141 4 119966828 to 119966843 15 - TSS region transcription start site region 43141
Tssr43142 4 119966885 to 119966892 7 - TSS region transcription start site region 43142
Tssr43143 4 119977857 to 119977863 6 - TSS region transcription start site region 43143
Gm38632 4 120004621 to 120049535 44914 - lncRNA gene predicted gene, 38632
Cpgi14708 4 120032286 to 120033538 1252 CpG island CpG island 14708
Tssr43144 4 120032366 to 120032386 20 - TSS region transcription start site region 43144
Tssr38761 4 120032489 to 120032524 35 + TSS region transcription start site region 38761
Tssr38762 4 120032535 to 120032547 12 + TSS region transcription start site region 38762
Tssr38763 4 120032734 to 120032753 19 + TSS region transcription start site region 38763
Tssr38764 4 120032766 to 120032866 100 + TSS region transcription start site region 38764
Tssr38765 4 120032876 to 120032907 31 + TSS region transcription start site region 38765
Tssr43145 4 120033370 to 120033376 6 - TSS region transcription start site region 43145
Gm36215 4 120065760 to 120074733 8973 - lncRNA gene predicted gene, 36215
Tssr38766 4 120095113 to 120095154 41 + TSS region transcription start site region 38766
Tssr38767 4 120096565 to 120096573 8 + TSS region transcription start site region 38767
Tssr38768 4 120097185 to 120097206 21 + TSS region transcription start site region 38768
Tssr38769 4 120097723 to 120097741 18 + TSS region transcription start site region 38769
Tssr38770 4 120097900 to 120097947 47 + TSS region transcription start site region 38770
Tssr38771 4 120134408 to 120134427 19 + TSS region transcription start site region 38771
Tssr38772 4 120134432 to 120134450 18 + TSS region transcription start site region 38772
Tssr43146 4 120134631 to 120134649 18 - TSS region transcription start site region 43146
Tssr38773 4 120134640 to 120134677 37 + TSS region transcription start site region 38773
Tssr38774 4 120134931 to 120134942 11 + TSS region transcription start site region 38774
Tssr38775 4 120134959 to 120134971 12 + TSS region transcription start site region 38775
Tssr38776 4 120136148 to 120136177 29 + TSS region transcription start site region 38776
Tssr38777 4 120136252 to 120136269 17 + TSS region transcription start site region 38777
Tssr38778 4 120136290 to 120136307 17 + TSS region transcription start site region 38778
Tssr38779 4 120136311 to 120136326 15 + TSS region transcription start site region 38779
Tssr38780 4 120137672 to 120137683 11 + TSS region transcription start site region 38780
Cpgi14709 4 120148343 to 120149156 813 CpG island CpG island 14709
Gm36134 4 120154185 to 120262151 107966 - lncRNA gene predicted gene, 36134
Edn2 4 120161206 to 120167360 6154 + protein coding gene endothelin 2
Cpgi14710 4 120161353 to 120161723 370 CpG island CpG island 14710
Tssr38781 4 120161419 to 120161425 6 + TSS region transcription start site region 38781
Gm36073 4 120176181 to 120181275 5094 + lncRNA gene predicted gene, 36073
Gm36013 4 120190783 to 120200316 9533 + lncRNA gene predicted gene, 36013
Cpgi14711 4 120266959 to 120269245 2286 CpG island CpG island 14711
Foxo6 4 120267078 to 120287261 20183 - protein coding gene forkhead box O6
Cpgi14712 4 120282308 to 120283292 984 CpG island CpG island 14712
Cpgi14713 4 120286625 to 120288337 1712 CpG island CpG island 14713
Tssr43147 4 120286985 to 120286988 3 - TSS region transcription start site region 43147
Tssr43148 4 120287670 to 120287683 13 - TSS region transcription start site region 43148
Tssr43149 4 120287696 to 120287754 58 - TSS region transcription start site region 43149
Tssr38782 4 120291343 to 120291354 11 + TSS region transcription start site region 38782
Foxo6os 4 120291350 to 120303892 12542 + antisense lncRNA gene forkhead box O6, opposite strand
Gm36499 4 120309702 to 120312945 3243 - lncRNA gene predicted gene, 36499
Gm36574 4 120319102 to 120397176 78074 - lncRNA gene predicted gene, 36574
Tssr38783 4 120338396 to 120338398 2 + TSS region transcription start site region 38783
Cpgi14714 4 120404925 to 120406065 1140 CpG island CpG island 14714
Tssr38784 4 120405173 to 120405221 48 + TSS region transcription start site region 38784
Tssr38785 4 120405259 to 120405287 28 + TSS region transcription start site region 38785
Scmh1 4 120405281 to 120530186 124905 + protein coding gene sex comb on midleg homolog 1
Tssr38786 4 120405288 to 120405404 116 + TSS region transcription start site region 38786