Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:119239784-119569832

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
P3h1 4 119232915 to 119248975 16060 + protein coding gene prolyl 3-hydroxylase 1
Gm12927 4 119252523 to 119256975 4452 - antisense lncRNA gene predicted gene 12927
Tssr38727 4 119255393 to 119255426 33 + TSS region transcription start site region 38727
Tssr38728 4 119255427 to 119255456 29 + TSS region transcription start site region 38728
Cldn19 4 119255441 to 119262438 6997 + protein coding gene claudin 19
Tssr38729 4 119255465 to 119255493 28 + TSS region transcription start site region 38729
Tssr38730 4 119255494 to 119255504 10 + TSS region transcription start site region 38730
Tssr43097 4 119257153 to 119257173 20 - TSS region transcription start site region 43097
Tssr38731 4 119257412 to 119257428 16 + TSS region transcription start site region 38731
Tssr38732 4 119262264 to 119262266 2 + TSS region transcription start site region 38732
Ybx1 4 119277981 to 119294604 16623 - protein coding gene Y box protein 1
Tssr43098 4 119279106 to 119279120 14 - TSS region transcription start site region 43098
Tssr43099 4 119282253 to 119282280 27 - TSS region transcription start site region 43099
Cpgi14698 4 119293479 to 119295096 1617 CpG island CpG island 14698
1700102N10Rik 4 119294136 to 119295146 1010 unclassified non-coding RNA gene RIKEN cDNA 1700102N10 gene
Tssr38733 4 119294175 to 119294191 16 + TSS region transcription start site region 38733
Tssr43100 4 119294238 to 119294310 72 - TSS region transcription start site region 43100
Tssr43101 4 119294400 to 119294445 45 - TSS region transcription start site region 43101
Tssr43102 4 119294447 to 119294470 23 - TSS region transcription start site region 43102
Tssr43103 4 119294500 to 119294518 18 - TSS region transcription start site region 43103
Tssr43104 4 119294520 to 119294538 18 - TSS region transcription start site region 43104
Tssr43105 4 119294714 to 119294725 11 - TSS region transcription start site region 43105
Tssr43106 4 119294744 to 119294753 9 - TSS region transcription start site region 43106
Gm37817 4 119295028 to 119295461 433 - unclassified gene predicted gene, 37817
Ppih 4 119300010 to 119320523 20513 - protein coding gene peptidyl prolyl isomerase H
Cpgi14699 4 119320093 to 119320735 642 CpG island CpG island 14699
Tssr43107 4 119320496 to 119320516 20 - TSS region transcription start site region 43107
Tssr38734 4 119320575 to 119320630 55 + TSS region transcription start site region 38734
Ccdc30 4 119322893 to 119415521 92628 - protein coding gene coiled-coil domain containing 30
Tssr43108 4 119333619 to 119333632 13 - TSS region transcription start site region 43108
Ldha-ps2 4 119334389 to 119335445 1056 - pseudogene lactate dehydrogenase A, pseudogene 2
Tssr43109 4 119335543 to 119335544 1 - TSS region transcription start site region 43109
Cpgi14700 4 119359504 to 119359866 362 CpG island CpG island 14700
Tssr43110 4 119359786 to 119359810 24 - TSS region transcription start site region 43110
Tssr43111 4 119359882 to 119359897 15 - TSS region transcription start site region 43111
Tssr43112 4 119359900 to 119359917 17 - TSS region transcription start site region 43112
Tssr43113 4 119383732 to 119383780 48 - TSS region transcription start site region 43113
Tssr43114 4 119383805 to 119383810 5 - TSS region transcription start site region 43114
Tssr43115 4 119383828 to 119383839 11 - TSS region transcription start site region 43115
Tssr43116 4 119404784 to 119404832 48 - TSS region transcription start site region 43116
Cpgi14701 4 119415006 to 119415689 683 CpG island CpG island 14701
Tssr43117 4 119415443 to 119415459 16 - TSS region transcription start site region 43117
Tssr43118 4 119415471 to 119415487 16 - TSS region transcription start site region 43118
Tssr43119 4 119415494 to 119415522 28 - TSS region transcription start site region 43119
Ppcs 4 119418530 to 119422420 3890 - protein coding gene phosphopantothenoylcysteine synthetase
Cpgi14702 4 119421748 to 119423160 1412 CpG island CpG island 14702
Tssr43120 4 119422355 to 119422418 63 - TSS region transcription start site region 43120
Zmynd12 4 119422657 to 119453899 31242 + protein coding gene zinc finger, MYND domain containing 12
Tssr38735 4 119422806 to 119422841 35 + TSS region transcription start site region 38735
Tssr38736 4 119422842 to 119422881 39 + TSS region transcription start site region 38736
D4Ertd669e 4 119460875 to 119461084 209 DNA segment DNA segment, Chr 4, ERATO Doi 669, expressed
Rimkla 4 119465283 to 119492598 27315 - protein coding gene ribosomal modification protein rimK-like family member A
Cpgi14703 4 119492028 to 119493123 1095 CpG island CpG island 14703
Tssr43121 4 119492547 to 119492561 14 - TSS region transcription start site region 43121
Tssr43122 4 119492563 to 119492618 55 - TSS region transcription start site region 43122
Gm12954 4 119501865 to 119502546 681 - pseudogene predicted gene 12954
Gm12956 4 119509648 to 119510061 413 - pseudogene predicted gene 12956
Gm12955 4 119519129 to 119520082 953 - pseudogene predicted gene 12955
Tssr38737 4 119520956 to 119520957 1 + TSS region transcription start site region 38737
Cpgi14704 4 119520988 to 119521342 354 CpG island CpG island 14704
Gm12957 4 119520990 to 119521366 376 + pseudogene predicted gene 12957
Rnu6-ps2 4 119528000 to 119528106 106 + pseudogene U6 small nuclear RNA, pseudogene 2
Frg2f1 4 119530308 to 119538769 8461 - protein coding gene FSHD region gene 2 family member 1
Cpgi14705 4 119538943 to 119540568 1625 CpG island CpG island 14705
Tssr38738 4 119539140 to 119539151 11 + TSS region transcription start site region 38738
Tssr43123 4 119539516 to 119539544 28 - TSS region transcription start site region 43123
Tssr38739 4 119539652 to 119539698 46 + TSS region transcription start site region 38739
Foxj3 4 119539661 to 119629119 89458 + protein coding gene forkhead box J3
Tssr38740 4 119539716 to 119539727 11 + TSS region transcription start site region 38740
Tssr43124 4 119540013 to 119540014 1 - TSS region transcription start site region 43124
Tssr43125 4 119540385 to 119540416 31 - TSS region transcription start site region 43125
Tssr38741 4 119540489 to 119540499 10 + TSS region transcription start site region 38741
Tssr38742 4 119540513 to 119540535 22 + TSS region transcription start site region 38742
Tssr38743 4 119544042 to 119544046 4 + TSS region transcription start site region 38743
Tssr38744 4 119553169 to 119553173 4 + TSS region transcription start site region 38744
Gm12959 4 119553656 to 119554058 402 - pseudogene predicted gene 12959